Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 3.8e-178 628.2 364 100.0
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 1.9e-113 413.3 410 65.1
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 2.5e-113 412.9 390 60.8
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 2.2e-109 399.8 292 72.3
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 4.6e-107 392.1 292 70.5
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 4.6e-107 392.1 292 70.9
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 6.0e-107 391.7 292 71.2
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 1.3e-106 390.6 292 69.2
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 3.0e-106 389.4 292 77.1
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 3.9e-106 389.0 292 69.2
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 3.9e-106 389.0 287 71.4
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 8.7e-106 387.9 292 76.0
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 1.1e-105 387.5 293 74.1
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 1.5e-105 387.1 291 69.4
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 1.9e-105 386.7 292 68.8
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 7.3e-105 384.8 292 69.5
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 1.3e-104 384.0 292 74.7
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 1.6e-104 383.6 292 68.8
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 2.8e-104 382.9 292 69.5
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 3.6e-104 382.5 292 69.2
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 1.8e-103 380.2 287 70.0
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 3.1e-103 379.4 290 70.0
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 4.0e-103 379.0 292 68.8
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 4.0e-103 379.0 292 76.4
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 5.3e-103 378.6 404 54.7
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 6.9e-103 378.3 292 68.8
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 6.9e-103 378.3 292 66.8
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 9.0e-103 377.9 292 68.2
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 1.2e-102 377.5 287 68.6
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 1.2e-102 377.5 324 67.9
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 1.5e-102 377.1 292 66.4
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 1.5e-102 377.1 292 67.5
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 2.6e-102 376.3 292 68.2
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 2.6e-102 376.3 287 68.3
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 3.4e-102 375.9 287 69.0
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 3.4e-102 375.9 292 66.4
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 5.8e-102 375.2 287 69.7
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 9.9e-102 374.4 292 67.1
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 1.3e-101 374.0 288 68.1
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 1.7e-101 373.6 292 68.8
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 2.2e-101 373.2 292 73.3
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 2.9e-101 372.9 292 67.5
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 4.9e-101 372.1 289 66.4
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 4.9e-101 372.1 292 65.8
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 6.4e-101 371.7 287 67.2
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 8.4e-101 371.3 287 66.2
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 1.1e-100 370.9 292 73.6
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 2.7e-99 366.3 292 65.1
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 2.7e-99 366.3 291 64.3
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 4.6e-99 365.5 288 66.3
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 1.3e-98 364.0 285 66.0
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.3e-98 364.0 295 64.4
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 1.8e-98 363.6 292 64.7
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 1.8e-98 363.6 280 68.9
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 2.3e-98 363.2 292 65.1
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 5.1e-98 362.1 292 65.4
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 5.1e-98 362.1 292 64.7
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 5.1e-98 362.1 285 65.6
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 8.7e-98 361.3 285 66.0
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 1.1e-97 360.9 290 66.9
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 1.9e-97 360.1 289 63.7
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 3.3e-97 359.4 285 66.0
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 4.3e-97 359.0 285 64.6
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 5.6e-97 358.6 285 64.9
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 7.4e-97 358.2 285 64.6
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 9.6e-97 357.8 237 77.6
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 1.3e-96 357.5 279 67.7
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 2.8e-96 356.3 285 64.9
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 2.8e-96 356.3 285 64.9
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 4.8e-96 355.5 347 58.2
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 6.2e-96 355.1 292 63.4
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 1.1e-95 354.4 292 65.4
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 3.1e-95 352.8 289 63.0
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 3.1e-95 352.8 285 63.9
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 3.1e-95 352.8 330 58.2
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 3.4e-94 349.4 380 52.6
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 4.9e-93 345.5 286 62.2
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 1.1e-92 344.4 286 62.6
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 4.2e-92 342.4 371 52.3
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 1.2e-91 340.9 237 74.3
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 1.6e-91 340.5 214 80.4
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 3.5e-91 339.3 285 61.8
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 1.8e-90 337.0 237 72.6
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 1.9e-89 333.6 287 60.6
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 2.5e-84 316.6 296 57.8
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 4.2e-84 315.8 372 49.7
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 4.2e-84 315.8 384 50.8
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 2.7e-83 313.2 439 44.2
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 5.1e-82 308.9 260 62.3
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 1.5e-78 297.4 237 66.2
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 2.2e-77 293.5 341 48.7
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 3.6e-75 286.2 294 54.1
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 2.3e-74 283.5 309 48.9
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 2.8e-72 276.6 244 59.0
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 3.4e-70 269.6 202 77.7
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 6.1e-67 258.8 288 53.8
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 5.7e-65 252.3 180 72.8
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 5.7e-65 252.3 212 62.7
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 1.3e-64 251.1 334 44.0
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 2.2e-64 250.4 303 47.2
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 6.3e-64 248.8 180 72.8
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 2.6e-62 243.4 185 68.1
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 9.4e-60 235.0 161 70.8
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 6.1e-59 232.3 300 50.3
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 8.8e-58 228.4 158 70.3
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 3.7e-56 223.0 305 39.3
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 1.0e-53 214.9 318 41.8
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 1.6e-51 207.6 194 57.2
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 1.5e-49 201.1 293 43.0
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 7.5e-49 198.7 150 61.3
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 2.1e-43 180.6 127 74.8
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 9.5e-36 155.2 130 66.2
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 1.1e-28 131.7 73 86.3
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 1.9e-28 131.0 73 84.9
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 1.6e-27 127.9 110 78.2
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 1.0e-26 125.2 73 80.8
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 1.9e-23 114.4 135 48.1
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 1.5e-20 104.8 61 82.0
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 2.3e-18 97.4 76 64.5
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 2.5e-12 77.4 112 50.9
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 2.6e-09 67.4 152 42.1
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 2.4e-07 60.8 37 75.7
Psat4g208440 Pisum sativum HOM05D006104 ORTHO05D008303 3.5e-06 57.0 51 66.7


User provided reference genes

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