Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.2e-292 1007.7 507 100.0
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 5.8e-233 810.8 499 83.0
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 3.2e-231 805.1 495 81.6
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 4.7e-227 791.2 499 79.0
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 1.5e-225 786.2 494 79.1
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 1.3e-224 783.1 488 80.9
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 3.8e-224 781.6 501 78.0
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 5.4e-223 777.7 498 78.1
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 5.4e-223 777.7 497 76.7
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.2e-222 776.5 477 80.3
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 1.6e-222 776.2 498 77.7
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 3.5e-222 775.0 491 78.0
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 3.5e-222 775.0 492 78.3
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 3.5e-222 775.0 497 76.5
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 1.7e-221 772.7 493 77.9
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 5.1e-221 771.2 514 77.2
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 6.6e-221 770.8 484 78.5
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.5e-220 769.6 491 78.0
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 5.6e-220 767.7 497 76.7
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 1.6e-219 766.1 491 78.2
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 1.6e-219 766.1 484 78.1
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.8e-219 765.4 499 77.0
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.1e-219 763.8 499 76.8
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 1.8e-218 762.7 478 80.1
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 1.8e-218 762.7 499 76.4
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 6.9e-218 760.8 491 77.6
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 1.5e-217 759.6 515 75.1
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 1.5e-217 759.6 484 79.8
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.0e-217 759.2 499 76.8
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 2.6e-217 758.8 494 76.7
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 4.4e-217 758.1 502 77.1
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.7e-216 756.1 500 77.2
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 1.7e-216 756.1 500 77.2
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 3.8e-216 755.0 493 76.3
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 3.8e-216 755.0 481 77.5
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 1.1e-215 753.4 492 76.0
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 1.4e-215 753.1 496 76.4
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.4e-215 753.1 497 76.5
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 1.4e-215 753.1 488 75.2
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 2.4e-215 752.3 501 77.2
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 7.1e-215 750.7 495 76.0
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 7.1e-215 750.7 477 77.6
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 7.1e-215 750.7 490 76.1
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 2.7e-214 748.8 505 75.4
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 3.5e-214 748.4 475 76.8
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 4.6e-214 748.0 497 76.7
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 6.0e-214 747.7 496 75.8
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 1.9e-212 742.7 530 73.8
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 2.5e-212 742.3 494 75.3
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 2.5e-212 742.3 494 75.3
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 4.3e-212 741.5 485 76.7
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 1.3e-211 740.0 493 75.1
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 1.6e-211 739.6 477 76.1
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 2.1e-211 739.2 494 75.3
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 4.8e-211 738.0 491 75.2
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 6.2e-211 737.6 489 73.6
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 6.2e-211 737.6 489 75.3
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 8.1e-211 737.3 481 75.1
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.4e-210 736.5 491 74.9
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 1.8e-210 736.1 481 75.9
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 2.4e-210 735.7 501 74.5
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 3.1e-210 735.3 489 73.4
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.1e-210 735.3 491 73.7
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 2.0e-209 732.6 485 75.5
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 2.6e-209 732.3 494 73.7
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 5.8e-209 731.1 479 74.9
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 7.6e-209 730.7 494 72.9
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 7.6e-209 730.7 491 74.5
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 1.3e-208 729.9 488 74.0
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 1.3e-208 729.9 494 72.7
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 1.3e-208 729.9 494 72.7
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 1.7e-208 729.6 531 70.8
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.2e-208 729.2 405 93.1
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 6.4e-208 727.6 505 72.5
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 6.4e-208 727.6 505 72.5
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.1e-207 726.9 484 73.8
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 1.1e-207 726.9 485 75.3
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.1e-207 726.9 491 73.3
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.4e-207 725.7 491 74.1
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 3.2e-207 725.3 487 74.3
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 3.2e-207 725.3 491 73.3
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 3.2e-207 725.3 490 73.3
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 4.2e-207 724.9 491 73.7
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 7.1e-207 724.2 505 71.9
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.2e-206 723.4 487 74.1
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.6e-206 723.0 491 73.7
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 6.0e-206 721.1 483 73.5
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 3.9e-205 718.4 478 74.9
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 5.1e-205 718.0 491 72.1
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 5.6e-204 714.5 502 71.5
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.6e-203 713.0 493 72.2
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.6e-203 713.0 496 73.2
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 1.6e-203 713.0 497 72.0
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 4.8e-203 711.4 492 72.8
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 8.1e-203 710.7 491 72.9
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 6.9e-202 707.6 494 71.5
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 6.9e-202 707.6 489 71.2
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 6.0e-198 694.5 481 71.7
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 1.5e-196 689.9 450 75.8
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 7.4e-196 687.6 509 69.4
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 2.8e-195 685.6 495 70.7
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 4.0e-194 681.8 498 68.7
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 2.6e-193 679.1 491 69.5
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 2.7e-190 669.1 485 68.7
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 3.5e-190 668.7 582 59.6
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 1.0e-189 667.2 492 68.9
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.3e-189 666.8 493 69.0
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 3.0e-189 665.6 518 66.8
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 3.3e-188 662.1 491 69.7
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 9.7e-188 660.6 494 70.9
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 6.3e-187 657.9 570 61.8
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 9.0e-186 654.1 492 66.7
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 9.0e-186 654.1 490 68.2
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 1.0e-184 650.6 490 66.1
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.4e-183 646.7 487 66.1
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 7.2e-183 644.4 486 66.0
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 2.7e-182 642.5 479 67.0
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 3.6e-182 642.1 475 68.4
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 6.1e-182 641.3 462 71.0
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 1.5e-180 636.7 486 69.1
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.5e-180 636.0 497 68.6
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 1.1e-178 630.6 497 62.0
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 3.8e-176 622.1 478 66.3
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 3.8e-176 622.1 505 60.4
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.1e-170 604.0 511 65.2
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 3.5e-161 572.4 447 62.0
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 8.5e-160 567.8 530 54.7
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 2.8e-155 552.7 378 73.8
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 6.3e-155 551.6 398 71.9
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 1.1e-154 550.8 493 56.6
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.0e-152 544.3 387 72.1
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-148 530.8 349 76.8
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.6e-148 529.6 357 75.4
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 4.4e-148 528.9 357 74.5
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 3.5e-145 519.2 547 53.4
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 1.3e-144 517.3 393 66.9
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 4.9e-139 498.8 359 71.6
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 4.0e-133 479.2 358 70.4
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 8.1e-126 454.9 305 75.7
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 5.2e-125 452.2 467 51.4
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.5e-124 448.4 398 61.8
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.1e-121 440.3 282 77.7
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 3.7e-115 419.5 300 69.3
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.7e-112 410.6 272 75.7
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 6.6e-112 408.7 275 74.9
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 3.5e-89 333.2 236 72.5
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 2.1e-81 307.4 243 67.5
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 3.0e-80 303.5 469 38.2
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.5e-79 301.2 193 77.2
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.3e-79 299.7 183 79.2
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 1.0e-67 261.9 204 67.2
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 4.1e-61 240.0 200 59.5
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 5.7e-55 219.5 137 75.9
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 2.8e-54 217.2 243 50.2
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.7e-54 216.9 114 94.7
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 4.1e-53 213.4 228 51.8
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 5.3e-53 213.0 134 76.1
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 1.7e-51 208.0 153 70.6
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 5.5e-50 203.0 139 73.4
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.0e-48 198.7 126 76.2
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.8e-48 198.0 114 88.6
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 7.0e-45 186.0 255 46.3
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 1.5e-39 168.3 116 69.0
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 7.0e-37 159.5 90 88.9
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 7.0e-37 159.5 99 76.8
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 7.0e-37 159.5 99 76.8
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 7.2e-34 149.4 147 51.7
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.8e-25 120.9 65 95.4
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 4.7e-25 120.2 74 79.7
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 1.0e-24 119.0 71 81.7
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.3e-24 117.9 65 92.3
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 6.8e-24 116.3 65 90.8
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 2.6e-23 114.4 67 80.6
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 2.6e-23 114.4 97 62.9
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 4.4e-23 113.6 63 84.1
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 2.9e-22 110.9 174 42.0
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 8.3e-22 109.4 105 59.0
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 7.0e-21 106.3 77 76.6
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.1e-18 99.0 65 75.4
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.0e-16 92.4 88 56.8
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 6.2e-09 66.6 38 73.7


User provided reference genes

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