Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 6.5e-73 277.7 188 100.0
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 6.5e-73 277.7 188 100.0
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 6.2e-39 164.9 182 58.2
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 6.2e-23 111.7 183 41.0
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 2.0e-21 106.7 173 42.8
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 2.6e-21 106.3 179 41.3
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 4.9e-20 102.1 190 39.5
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 4.2e-19 99.0 171 38.6
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 1.6e-18 97.1 109 57.8
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 2.1e-18 96.7 183 38.8
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 6.0e-18 95.1 182 40.7
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 1.3e-17 94.0 191 35.6
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 2.3e-17 93.2 103 52.4
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 2.3e-17 93.2 181 39.2
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 3.9e-17 92.4 109 49.5
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 6.6e-17 91.7 181 38.7
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 8.7e-17 91.3 108 48.1
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 8.7e-17 91.3 182 48.4
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 1.5e-16 90.5 169 37.9
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 1.5e-16 90.5 114 52.6
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 5.6e-16 88.6 101 51.5
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 7.3e-16 88.2 159 39.0
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 7.3e-16 88.2 159 39.0
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 9.6e-16 87.8 163 38.0
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 9.6e-16 87.8 163 38.0
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 1.6e-15 87.0 187 34.8
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 3.6e-15 85.9 88 59.1
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 6.2e-15 85.1 183 36.1
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 1.1e-14 84.3 172 34.9
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 1.8e-14 83.6 174 35.1
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 2.4e-14 83.2 150 35.3
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 4.0e-14 82.4 107 48.6
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 4.0e-14 82.4 183 37.7
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 5.3e-14 82.0 157 35.0
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 5.3e-14 82.0 150 34.7
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 5.3e-14 82.0 71 64.8
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 1.2e-13 80.9 177 34.5
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 2.6e-13 79.7 154 36.4
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 2.6e-13 79.7 101 49.5
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 2.6e-13 79.7 71 63.4
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 3.4e-13 79.3 119 48.7
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 5.8e-13 78.6 159 40.9
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 5.8e-13 78.6 95 55.8
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 9.9e-13 77.8 94 56.4
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 1.7e-12 77.0 170 34.7
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 1.7e-12 77.0 81 53.1
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 1.7e-12 77.0 81 53.1
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 4.9e-12 75.5 75 57.3
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 8.4e-12 74.7 179 36.9
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 8.4e-12 74.7 94 55.3
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 1.1e-11 74.3 149 40.9
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 1.1e-11 74.3 115 40.9
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 1.9e-11 73.6 181 33.7
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 3.2e-11 72.8 160 33.1
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 3.2e-11 72.8 183 35.5
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 4.2e-11 72.4 86 51.2
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 5.4e-11 72.0 185 35.7
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 5.4e-11 72.0 100 47.0
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 5.4e-11 72.0 156 35.3
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 7.1e-11 71.6 101 55.4
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 9.3e-11 71.2 119 42.9
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 9.3e-11 71.2 107 41.1
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 2.1e-10 70.1 98 46.9
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 2.7e-10 69.7 54 66.7
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 2.7e-10 69.7 54 66.7
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 2.7e-10 69.7 111 39.6
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 2.7e-10 69.7 111 39.6
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 2.7e-10 69.7 120 46.7
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 3.5e-10 69.3 108 40.7
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 3.5e-10 69.3 80 53.8
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 3.5e-10 69.3 87 49.4
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 6.0e-10 68.6 73 52.1
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 7.9e-10 68.2 111 38.7
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 7.9e-10 68.2 75 54.7
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 1.0e-09 67.8 165 30.3
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 1.3e-09 67.4 76 59.2
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 1.3e-09 67.4 111 37.8
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 1.3e-09 67.4 176 33.5
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 1.8e-09 67.0 110 37.3
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 3.0e-09 66.2 76 50.0
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 3.0e-09 66.2 100 39.0
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 3.0e-09 66.2 99 54.5
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 3.9e-09 65.9 97 40.2
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 3.9e-09 65.9 114 36.8
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 5.1e-09 65.5 111 38.7
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.1e-09 65.5 160 33.1
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 8.7e-09 64.7 103 39.8
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 8.7e-09 64.7 63 52.4
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.1e-08 64.3 103 46.6
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.1e-08 64.3 103 46.6
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 1.5e-08 63.9 98 40.8
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 1.5e-08 63.9 98 40.8
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 1.5e-08 63.9 89 48.3
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 1.9e-08 63.5 70 54.3
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 3.3e-08 62.8 76 51.3
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 3.3e-08 62.8 114 43.0
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 4.3e-08 62.4 107 37.4
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.6e-08 62.0 163 32.5
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 5.6e-08 62.0 114 43.9
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 7.4e-08 61.6 96 39.6
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 9.6e-08 61.2 61 57.4
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 9.6e-08 61.2 183 30.6
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 9.6e-08 61.2 163 32.5
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 1.3e-07 60.8 91 46.2
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.6e-07 60.5 163 31.9
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 2.1e-07 60.1 101 35.6
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 2.1e-07 60.1 172 33.1
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.4e-06 57.4 82 43.9
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 1.8e-06 57.0 98 38.8
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 1.8e-06 57.0 74 48.6
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 2.4e-06 56.6 92 37.0
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 2.4e-06 56.6 99 35.4
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 3.1e-06 56.2 70 47.1
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 4.0e-06 55.8 113 35.4
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 4.0e-06 55.8 89 42.7
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 4.0e-06 55.8 77 49.4
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 5.3e-06 55.5 55 56.4
Lj3P401T12 Lonicera japonica HOM05D005061 ORTHO05D006001 5.3e-06 55.5 34 67.6
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 5.3e-06 55.5 101 39.6
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 5.3e-06 55.5 70 47.1


User provided reference genes

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