Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 1.3e-301 1038.9 514 100.0
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 2.2e-264 915.2 514 86.6
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.9e-255 885.6 548 80.1
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 2.1e-246 855.5 515 81.4
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 2.8e-243 845.1 513 81.1
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 3.1e-242 841.6 514 81.3
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.5e-241 839.3 601 72.0
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 2.2e-240 835.5 514 80.7
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 4.2e-239 831.2 514 80.2
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 9.3e-239 830.1 514 77.4
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.2e-238 829.7 513 78.9
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.3e-237 825.5 514 77.4
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 3.9e-237 824.7 511 80.4
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 3.9e-237 824.7 514 78.2
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 5.1e-237 824.3 514 79.6
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 1.1e-236 823.2 514 79.8
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 1.9e-236 822.4 511 78.3
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 2.5e-236 822.0 513 78.6
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 3.3e-236 821.6 511 79.5
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 4.3e-236 821.2 514 79.6
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.3e-235 819.7 514 77.6
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 1.6e-235 819.3 512 79.1
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.2e-235 818.9 514 79.4
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 1.1e-234 816.6 511 77.5
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 1.5e-233 812.8 513 78.4
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 2.0e-233 812.4 513 78.4
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 2.9e-232 808.5 513 79.1
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 5.0e-232 807.7 474 84.2
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 5.0e-232 807.7 514 78.2
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 8.5e-232 807.0 490 80.8
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 1.1e-231 806.6 513 78.2
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 3.6e-230 801.6 514 77.0
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 3.0e-229 798.5 513 76.2
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 5.1e-229 797.7 514 76.5
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 8.8e-229 797.0 511 75.9
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 1.5e-228 796.2 514 75.1
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 1.5e-228 796.2 567 72.7
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 6.3e-227 790.8 514 75.1
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 1.1e-226 790.0 452 85.6
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 1.4e-226 789.6 511 75.9
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 2.4e-226 788.9 514 76.1
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 4.1e-226 788.1 511 76.1
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 5.3e-226 787.7 515 76.7
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 6.9e-226 787.3 507 77.1
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 2.6e-225 785.4 513 74.3
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 1.0e-224 783.5 514 74.1
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 2.2e-224 782.3 514 74.9
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.4e-223 779.6 482 79.7
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.4e-223 779.6 511 75.3
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 4.2e-223 778.1 513 73.5
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 9.4e-223 776.9 514 72.8
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 2.1e-222 775.8 516 74.8
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.7e-222 775.4 512 75.4
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 3.6e-222 775.0 514 74.5
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 3.0e-221 771.9 526 71.9
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 5.1e-221 771.2 515 74.6
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 6.7e-221 770.8 513 73.1
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 2.0e-220 769.2 511 75.0
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 9.7e-220 766.9 514 73.3
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 2.2e-219 765.8 511 74.8
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 2.8e-219 765.4 552 70.1
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 3.7e-219 765.0 514 72.8
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 8.2e-219 763.8 552 69.9
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 8.2e-219 763.8 507 74.6
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.8e-218 762.7 507 74.6
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 3.1e-218 761.9 514 73.2
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 4.1e-218 761.5 511 74.0
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 2.0e-217 759.2 514 73.0
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 3.5e-217 758.4 514 73.5
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 3.5e-217 758.4 514 73.5
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 4.5e-217 758.1 514 73.2
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 4.5e-217 758.1 513 74.7
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 5.9e-217 757.7 473 80.3
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 5.9e-217 757.7 514 73.3
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 1.0e-216 756.9 514 73.0
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 1.0e-216 756.9 514 73.5
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 1.0e-216 756.9 517 72.7
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 1.3e-216 756.5 514 73.2
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 1.3e-216 756.5 513 71.9
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 2.2e-216 755.7 514 72.8
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 2.9e-216 755.4 515 73.0
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 2.9e-216 755.4 515 73.0
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 2.9e-216 755.4 522 72.0
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.9e-216 755.4 513 74.5
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 3.8e-216 755.0 514 72.8
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 5.0e-216 754.6 515 72.4
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 2.5e-215 752.3 517 72.3
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 3.2e-215 751.9 515 72.8
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 3.2e-215 751.9 507 73.8
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 9.4e-215 750.4 515 72.0
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 2.7e-214 748.8 513 71.5
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 2.7e-214 748.8 480 76.7
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 4.7e-214 748.0 516 72.7
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 3.0e-213 745.3 512 72.5
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 6.7e-213 744.2 478 76.4
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 8.8e-213 743.8 517 71.6
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 1.3e-211 740.0 514 72.0
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 2.4e-210 735.7 514 70.8
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 5.3e-210 734.6 511 70.6
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 7.7e-209 730.7 494 73.9
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.1e-207 726.9 514 71.6
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 1.1e-207 726.9 526 70.3
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.5e-207 726.5 514 71.4
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.5e-207 726.5 528 68.9
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 1.9e-207 726.1 512 69.1
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 3.6e-206 721.8 513 70.2
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.4e-205 719.9 513 71.9
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 4.0e-205 718.4 513 71.7
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.5e-204 716.5 502 71.3
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 1.7e-203 713.0 588 62.9
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 7.0e-202 707.6 500 71.8
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 2.0e-201 706.1 466 74.7
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.8e-200 701.8 539 68.6
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 5.0e-200 701.4 511 68.5
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.6e-198 696.4 504 68.3
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 2.6e-196 689.1 511 66.9
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 8.3e-195 684.1 512 67.2
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 1.8e-194 682.9 515 68.9
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 7.0e-194 681.0 514 66.9
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 1.1e-191 673.7 454 74.0
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 1.2e-188 663.7 456 71.5
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 7.0e-186 654.4 404 77.5
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 7.3e-183 644.4 408 77.7
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 1.2e-182 643.7 513 64.5
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 3.6e-166 589.0 479 64.9
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 3.4e-164 582.4 664 50.9
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 9.6e-159 564.3 532 56.2
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 1.4e-154 550.4 543 53.6
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 2.2e-147 526.6 457 60.6
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 4.8e-142 508.8 426 61.3
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 5.6e-135 485.3 508 54.3
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 6.2e-134 481.9 339 70.2
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 3.4e-132 476.1 273 82.1
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.8e-120 437.2 275 80.7
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 3.0e-112 409.8 279 71.3
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 3.1e-93 346.7 244 69.7
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.6e-92 344.4 212 78.3
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 4.4e-87 326.2 219 75.8
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 1.1e-85 321.6 240 65.0
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 3.0e-80 303.5 246 63.0
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 1.2e-76 291.6 508 41.1
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 9.2e-61 238.8 554 31.0
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.2e-55 221.9 393 35.4
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 6.4e-46 189.5 121 73.6
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 5.4e-45 186.4 138 68.8
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.9e-43 180.3 183 51.9
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 2.4e-40 171.0 114 71.9
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 1.7e-38 164.9 110 76.4
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.1e-32 145.6 188 42.0
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 9.0e-32 142.5 251 39.0
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.6e-31 141.0 251 38.6
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 6.6e-27 126.3 68 85.3
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.9e-26 124.8 101 70.3
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 8.7e-19 99.4 170 30.0
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 1.9e-18 98.2 73 71.2
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 1.5e-15 88.6 61 72.1
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 4.5e-15 87.0 113 46.0
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 2.5e-10 71.2 86 46.5
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 4.8e-09 67.0 239 25.5
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.1e-08 64.3 36 83.3
PRCOL_00005868 Prasinoderma coloniale HOM05D000740 ORTHO05D007141 6.9e-08 63.2 121 33.9
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 9.0e-08 62.8 74 44.6
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 1.5e-07 62.0 100 31.0
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.2e-06 58.2 120 38.3
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 2.9e-06 57.8 36 72.2


User provided reference genes

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