Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 1.4e-257 892.5 456 100.0
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 3.5e-221 771.5 456 85.1
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 8.9e-217 756.9 470 81.9
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.2e-213 746.5 456 83.3
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 2.1e-213 745.7 452 83.2
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 3.8e-207 724.9 456 79.8
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.4e-206 723.0 456 78.7
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 6.2e-202 707.6 456 78.5
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.0e-201 704.9 456 77.9
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 2.2e-199 699.1 423 83.2
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 6.4e-199 697.6 456 76.3
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 8.4e-199 697.2 450 77.8
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 5.4e-198 694.5 456 77.0
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 1.4e-193 679.9 460 73.7
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 4.0e-193 678.3 460 73.3
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 1.4e-190 669.8 454 74.0
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 4.2e-190 668.3 456 74.3
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 5.4e-190 667.9 456 74.1
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 7.1e-190 667.5 454 74.2
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 9.3e-190 667.2 458 72.9
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 1.2e-189 666.8 456 73.9
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 1.6e-189 666.4 454 74.2
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 2.1e-189 666.0 458 74.5
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 2.7e-189 665.6 464 72.2
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 7.9e-189 664.1 449 74.2
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.3e-188 662.5 449 73.9
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 3.0e-188 662.1 449 73.7
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.9e-187 659.4 457 73.3
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.9e-187 659.4 457 73.3
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 4.3e-187 658.3 449 73.7
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 7.4e-187 657.5 457 72.6
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 7.4e-187 657.5 418 79.2
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 2.8e-186 655.6 454 73.8
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 3.7e-186 655.2 456 73.2
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 1.2e-184 650.2 458 72.7
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 1.5e-184 649.8 479 68.9
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.6e-184 649.0 454 70.3
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 3.4e-184 648.7 439 73.1
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 3.4e-184 648.7 453 69.5
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 3.8e-183 645.2 452 72.3
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 6.4e-183 644.4 449 71.5
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 8.4e-183 644.0 454 71.1
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.1e-182 643.7 454 71.1
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 1.4e-182 643.3 450 70.9
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 1.4e-182 643.3 452 72.1
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.4e-182 643.3 452 72.6
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 3.2e-182 642.1 450 70.9
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 7.9e-181 637.5 457 70.9
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 1.3e-180 636.7 452 71.5
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.1e-179 633.6 454 68.9
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 1.1e-179 633.6 449 71.5
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 1.5e-179 633.3 452 70.8
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 3.3e-179 632.1 452 70.1
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 5.6e-179 631.3 478 69.2
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 5.6e-179 631.3 478 69.2
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.8e-178 629.0 456 71.3
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 4.8e-178 628.2 452 69.5
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 8.2e-178 627.5 451 69.6
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 4.0e-177 625.2 452 69.5
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 1.5e-176 623.2 452 68.6
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 2.0e-176 622.9 436 71.3
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 7.6e-176 620.9 456 68.0
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 7.6e-176 620.9 455 68.4
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 2.9e-175 619.0 455 67.9
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 4.9e-175 618.2 455 67.9
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 4.9e-175 618.2 455 67.9
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 4.9e-175 618.2 455 67.5
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 4.9e-175 618.2 449 69.3
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 6.5e-175 617.8 455 67.7
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 8.4e-175 617.5 456 69.3
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 1.1e-174 617.1 449 68.4
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 9.3e-174 614.0 550 60.2
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 1.6e-173 613.2 455 67.5
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.6e-173 613.2 444 69.6
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 1.6e-173 613.2 466 66.7
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 6.0e-173 611.3 456 67.1
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 7.9e-173 610.9 473 67.4
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 1.8e-172 609.8 460 66.7
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 3.0e-172 609.0 455 67.0
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 3.0e-172 609.0 455 67.0
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 3.9e-172 608.6 455 66.8
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 6.7e-172 607.8 455 67.7
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 6.7e-172 607.8 457 67.4
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.1e-171 607.1 454 67.6
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 2.5e-171 605.9 455 66.8
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 5.7e-171 604.7 442 69.2
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 1.3e-170 603.6 457 67.0
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 1.3e-170 603.6 455 67.0
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.3e-170 603.6 391 76.5
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 1.3e-170 603.6 494 64.2
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 8.2e-170 600.9 456 66.4
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 8.2e-170 600.9 440 68.6
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.8e-169 599.7 399 74.2
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.1e-169 599.0 457 66.1
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 3.1e-169 599.0 455 67.3
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 4.1e-169 598.6 458 66.8
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 9.0e-169 597.4 456 67.3
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.5e-168 596.7 476 64.5
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.5e-168 596.7 454 66.7
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 3.4e-168 595.5 482 63.1
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.4e-168 595.5 448 67.4
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 5.0e-167 591.7 454 66.3
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 3.2e-166 589.0 397 73.3
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 4.2e-166 588.6 451 66.7
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 2.3e-164 582.8 480 63.1
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 1.5e-163 580.1 476 63.4
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 2.2e-162 576.2 466 64.6
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.2e-159 566.2 442 63.3
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 6.5e-159 564.7 405 72.1
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 7.9e-157 557.8 410 68.5
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 2.3e-156 556.2 399 68.9
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 1.5e-155 553.5 456 63.8
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 5.9e-152 541.6 435 63.0
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 1.3e-151 540.4 452 61.7
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.4e-150 537.0 389 68.9
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 3.2e-150 535.8 452 61.7
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 8.5e-143 511.1 448 58.7
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 2.0e-136 490.0 457 55.1
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.5e-136 489.2 350 71.4
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 3.5e-136 489.2 457 55.6
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 5.5e-134 481.9 455 54.5
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 7.2e-134 481.5 455 54.7
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 1.6e-133 480.3 451 54.5
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 1.3e-130 470.7 443 54.4
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 2.7e-128 463.0 389 60.9
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 4.5e-128 462.2 454 56.4
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.4e-123 446.0 441 58.3
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 3.4e-123 446.0 279 77.1
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 6.1e-117 425.2 456 51.8
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 1.4e-116 424.1 318 69.5
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.7e-104 383.3 399 54.1
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.2e-101 374.4 252 73.0
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.2e-99 367.9 264 70.1
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 8.6e-95 351.7 454 44.9
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 4.9e-90 335.9 290 60.7
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 1.5e-75 287.7 198 70.7
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 2.7e-72 276.9 311 51.8
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 8.1e-69 265.4 456 38.4
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.6e-61 241.1 158 77.8
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.5e-59 234.6 158 75.3
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.1e-57 228.4 129 81.4
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 5.7e-54 216.1 173 63.0
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 3.4e-51 206.8 194 54.1
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 4.5e-43 179.9 140 67.9
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 7.7e-43 179.1 118 78.0
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 8.5e-42 175.6 121 73.6
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.3e-37 161.8 135 64.4
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.6e-32 144.8 94 74.5
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 2.6e-30 137.5 118 63.6
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 4.8e-29 133.3 77 79.2
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 7.5e-22 109.4 99 53.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 7.2e-17 92.8 81 54.3
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 3.6e-16 90.5 57 75.4
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 1.8e-15 88.2 63 71.4
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 1.3e-13 82.0 57 66.7
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.8e-10 70.5 42 73.8
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 1.5e-09 68.6 77 49.4
FvH4_5g06577 Fragaria vesca HOM05D000025 ORTHO05D000040 8.9e-07 59.3 37 78.4


User provided reference genes

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