Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.1e-27 125.9 63 100.0
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 5.8e-26 120.2 62 95.2
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 3.0e-22 107.8 57 89.5
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 8.7e-22 106.3 57 87.7
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 1.9e-21 105.1 57 84.2
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 8.2e-20 99.8 61 77.0
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 1.1e-19 99.4 61 75.4
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.1e-19 99.4 61 77.0
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 1.8e-19 98.6 61 73.8
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 2.4e-19 98.2 61 75.4
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 2.4e-19 98.2 61 72.1
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 4.1e-19 97.4 61 72.1
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 4.1e-19 97.4 61 73.8
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 6.9e-19 96.7 61 70.5
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 1.2e-18 95.9 61 73.8
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 3.4e-18 94.4 61 70.5
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 5.9e-18 93.6 61 68.9
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 7.6e-18 93.2 61 70.5
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 2.9e-17 91.3 61 70.5
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 3.8e-17 90.9 61 68.9
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 5.0e-17 90.5 61 67.2
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 5.0e-17 90.5 61 72.1
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 5.0e-17 90.5 61 72.1
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 5.0e-17 90.5 61 72.1
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 6.5e-17 90.1 62 69.4
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.1e-16 89.4 57 73.7
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 1.4e-16 89.0 61 67.2
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 1.4e-16 89.0 61 67.2
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 3.2e-16 87.8 61 65.6
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 4.2e-16 87.4 61 67.2
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 5.5e-16 87.0 61 62.3
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 5.5e-16 87.0 57 71.9
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 5.5e-16 87.0 61 62.3
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 7.2e-16 86.7 58 74.1
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 9.3e-16 86.3 61 63.9
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 9.3e-16 86.3 57 70.2
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 1.2e-15 85.9 61 63.9
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.2e-15 85.9 61 63.9
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 1.6e-15 85.5 61 62.3
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.1e-15 85.1 61 63.9
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 2.1e-15 85.1 57 68.4
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.7e-15 84.7 61 62.3
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 2.7e-15 84.7 61 63.9
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 4.6e-15 84.0 61 62.3
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 6.1e-15 83.6 61 62.3
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 7.9e-15 83.2 57 68.4
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 1.0e-14 82.8 59 62.7
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.8e-14 82.0 61 60.7
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 1.8e-14 82.0 61 62.3
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 1.8e-14 82.0 61 62.3
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 1.8e-14 82.0 61 63.9
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 3.9e-14 80.9 61 57.4
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 3.9e-14 80.9 61 60.7
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 3.9e-14 80.9 57 64.9
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 3.9e-14 80.9 61 59.0
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 5.1e-14 80.5 61 54.1
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 5.1e-14 80.5 57 64.9
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 6.7e-14 80.1 61 60.7
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 6.7e-14 80.1 57 68.4
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 8.7e-14 79.7 61 62.3
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 8.7e-14 79.7 61 57.4
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 1.9e-13 78.6 61 62.3
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 2.5e-13 78.2 61 57.4
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 4.3e-13 77.4 61 55.7
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 5.7e-13 77.0 61 54.1
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 7.4e-13 76.6 57 63.2
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 1.6e-12 75.5 61 57.4
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 2.8e-12 74.7 61 57.4
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 6.3e-12 73.6 62 56.5
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 6.3e-12 73.6 61 54.1
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 1.4e-11 72.4 57 57.9
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 1.8e-11 72.0 56 62.5
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 3.1e-11 71.2 57 63.2
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 5.3e-11 70.5 61 55.7
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 5.3e-11 70.5 61 57.4
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 1.2e-10 69.3 57 52.6
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 2.6e-10 68.2 57 61.4
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 3.4e-10 67.8 63 55.6
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 5.9e-10 67.0 56 58.9
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 1.3e-09 65.9 57 52.6
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.3e-09 65.9 61 55.7
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 1.3e-09 65.9 39 74.4
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 1.3e-09 65.9 39 74.4
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 2.2e-09 65.1 57 50.9
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 2.9e-09 64.7 57 52.6
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 3.8e-09 64.3 58 53.4
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 3.8e-09 64.3 58 53.4
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 1.1e-08 62.8 61 52.5
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 1.9e-08 62.0 60 50.0
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 2.5e-08 61.6 57 54.4
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 4.2e-08 60.8 42 64.3
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 5.5e-08 60.5 57 49.1
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 1.2e-07 59.3 56 46.4
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 1.2e-07 59.3 56 46.4
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 1.2e-07 59.3 56 46.4
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 1.2e-07 59.3 60 50.0
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 3.6e-07 57.8 55 45.5
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 7.9e-07 56.6 61 47.5
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 1.8e-06 55.5 58 46.6
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 3.0e-06 54.7 36 66.7
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 6.7e-06 53.5 55 41.8
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 6.7e-06 53.5 55 41.8


User provided reference genes

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