Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.1e-231 804.3 387 100.0
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.6e-230 802.4 386 99.7
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.3e-204 714.5 386 88.1
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.8e-203 711.8 386 87.8
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.3e-200 703.0 385 87.0
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 1.2e-198 696.4 386 87.0
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 6.0e-198 694.1 384 85.2
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 7.9e-198 693.7 385 85.5
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 2.4e-186 655.6 404 78.7
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 4.0e-186 654.8 385 77.9
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 7.6e-185 650.6 379 78.6
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 7.6e-185 650.6 385 77.7
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 2.9e-184 648.7 377 80.9
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 6.5e-184 647.5 388 77.3
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 2.5e-183 645.6 379 79.2
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 3.5e-182 641.7 379 77.8
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 7.9e-182 640.6 382 78.0
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 6.7e-181 637.5 384 77.6
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.1e-180 636.7 389 75.6
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 1.9e-180 636.0 377 78.0
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 4.3e-180 634.8 382 77.0
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 5.7e-180 634.4 375 77.6
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.3e-179 633.3 477 67.5
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 1.6e-179 632.9 379 78.1
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 1.6e-179 632.9 384 75.3
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 2.8e-179 632.1 379 77.6
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 1.1e-178 630.2 384 77.1
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 1.4e-178 629.8 377 77.5
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 2.4e-178 629.0 378 77.0
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 2.4e-178 629.0 379 76.3
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 4.1e-178 628.2 385 75.6
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 5.3e-178 627.9 378 77.0
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 6.9e-178 627.5 375 77.3
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.5e-177 626.3 379 77.0
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 2.0e-177 625.9 374 77.8
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 2.6e-177 625.5 378 77.0
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 2.6e-177 625.5 378 77.0
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 4.5e-177 624.8 385 74.5
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 4.5e-177 624.8 385 74.5
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 5.9e-177 624.4 379 74.9
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 5.9e-177 624.4 379 76.8
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 7.6e-177 624.0 374 76.5
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 7.6e-177 624.0 378 75.7
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 7.6e-177 624.0 384 75.0
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 1.0e-176 623.6 376 76.6
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 1.3e-176 623.2 339 87.0
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 1.3e-176 623.2 385 74.5
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 2.9e-176 622.1 378 76.7
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 2.9e-176 622.1 375 76.3
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 3.8e-176 621.7 383 75.2
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 6.5e-176 620.9 377 74.3
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 6.5e-176 620.9 385 74.0
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 6.5e-176 620.9 378 77.0
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.4e-175 619.8 385 73.8
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 1.9e-175 619.4 378 76.7
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 1.9e-175 619.4 374 76.5
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 2.5e-175 619.0 381 75.3
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 3.2e-175 618.6 375 75.5
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 4.2e-175 618.2 384 74.0
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.7e-174 615.5 379 76.5
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 3.6e-174 615.1 384 73.4
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.6e-174 615.1 368 75.0
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 4.6e-174 614.8 383 74.7
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 6.1e-174 614.4 377 75.9
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 6.1e-174 614.4 385 75.8
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.4e-173 613.2 368 74.7
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.5e-172 609.8 375 74.1
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 4.3e-172 608.2 373 74.5
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 3.7e-171 605.1 372 75.5
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 4.8e-171 604.7 393 73.8
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 6.3e-171 604.4 368 73.9
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 8.2e-171 604.0 375 73.3
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.8e-170 602.8 393 73.5
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 3.1e-170 602.1 385 71.7
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 3.1e-170 602.1 386 72.0
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 9.1e-170 600.5 378 73.3
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 2.0e-169 599.4 408 69.4
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 3.4e-169 598.6 387 71.8
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 7.7e-169 597.4 386 73.8
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.3e-168 596.7 380 71.6
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 1.7e-168 596.3 377 72.4
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 2.2e-168 595.9 388 71.6
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 8.5e-168 594.0 382 73.6
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 8.5e-168 594.0 378 72.5
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 1.4e-167 593.2 378 72.5
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 1.9e-167 592.8 414 69.6
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 2.5e-167 592.4 405 71.1
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 5.5e-167 591.3 372 71.8
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 5.5e-167 591.3 379 70.4
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 3.6e-166 588.6 388 69.3
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 4.7e-166 588.2 372 71.5
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 1.4e-165 586.6 377 71.4
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 1.8e-165 586.3 379 69.7
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 2.3e-165 585.9 372 71.8
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 3.9e-165 585.1 379 71.2
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 1.3e-163 580.1 379 69.1
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 8.2e-163 577.4 379 68.6
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 8.2e-163 577.4 381 69.0
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 6.9e-162 574.3 375 71.2
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 9.1e-162 573.9 379 68.6
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 1.5e-161 573.2 379 69.1
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 1.0e-160 570.5 379 68.9
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 1.0e-160 570.5 379 68.9
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 1.0e-160 570.5 379 68.3
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 1.0e-160 570.5 379 68.9
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 1.3e-160 570.1 379 68.9
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.7e-160 569.7 379 69.9
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.8e-160 568.5 375 70.4
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 5.0e-160 568.2 379 68.1
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 6.5e-160 567.8 379 68.1
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 6.5e-160 567.8 378 69.6
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.1e-159 567.0 355 81.1
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 9.4e-159 563.9 372 68.5
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 9.4e-159 563.9 385 68.8
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 1.2e-158 563.5 379 67.5
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.2e-158 563.5 341 77.7
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 1.8e-157 559.7 379 68.3
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 8.8e-157 557.4 538 55.0
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 3.3e-156 555.4 387 66.4
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 4.4e-156 555.1 383 67.9
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 4.5e-153 545.0 409 64.1
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 5.9e-153 544.7 386 64.8
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 1.3e-152 543.5 377 68.4
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 2.9e-152 542.3 345 71.0
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 1.1e-151 540.4 391 64.7
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 3.2e-151 538.9 397 64.0
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 3.2e-151 538.9 378 69.8
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 1.6e-150 536.6 371 68.2
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 6.7e-149 531.2 383 66.1
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 3.7e-147 525.4 388 64.4
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 7.0e-146 521.2 356 67.1
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 4.7e-142 508.4 369 65.0
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.7e-139 498.8 368 64.7
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.4e-138 496.9 355 67.9
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 3.3e-127 459.1 408 55.6
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.3e-123 447.2 364 58.8
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 3.9e-120 435.6 310 64.2
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 6.8e-117 424.9 386 50.8
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 1.7e-115 420.2 307 65.5
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.1e-114 417.5 377 51.7
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.2e-113 414.1 253 77.9
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 2.1e-113 413.3 380 51.1
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 7.3e-111 404.8 371 51.5
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 1.0e-96 357.8 426 44.8
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 2.1e-89 333.6 296 55.4
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.3e-83 314.3 196 79.1
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 5.4e-82 308.9 182 76.4
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 4.8e-70 269.2 191 66.0
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.2e-49 201.4 149 64.4
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 1.1e-47 194.9 112 81.2
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 2.5e-42 177.2 101 83.2
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 5.0e-35 152.9 113 62.8
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 5.0e-35 152.9 149 54.4
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 1.9e-34 151.0 209 36.8
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 6.1e-33 146.0 112 67.9
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.0e-32 145.2 112 67.9
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 5.3e-29 132.9 84 69.0
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.2e-28 131.7 81 71.6
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.8e-27 126.7 86 68.6
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 1.0e-24 118.6 66 77.3
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.3e-24 117.5 112 61.6
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 2.0e-23 114.4 350 27.7
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.0e-23 114.4 71 70.4
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.0e-20 104.4 62 74.2
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 2.1e-17 94.4 67 71.6
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 2.2e-14 84.3 78 48.7
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 2.8e-14 84.0 48 81.2
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.6e-09 68.2 45 64.4
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 1.5e-07 61.6 39 69.2
Lsat_1_v5_gn_6_23680 Lactuca sativa HOM05D001176 ORTHO05D014361 7.5e-07 59.3 53 56.6
ATR0681G284 Amborella trichopoda HOM05D003877 ORTHO05D038325 1.3e-06 58.5 38 55.3
SEGI_18884 Sequoiadendron giganteum HOM05D003877 ORTHO05D038325 2.2e-06 57.8 45 46.7
PSO063G3403 Papaver somniferum HOM05D000240 ORTHO05D002721 8.3e-06 55.8 58 41.4


User provided reference genes

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