Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044738 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 8.2e-64 246.9 125 100.0
CSS0036720 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.5e-52 208.8 117 93.2
CSS0040700 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.5e-52 208.8 117 93.2
CSS0027656 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 7.2e-52 207.2 117 92.3
Rhsim01G0201300 Rhododendron simsii HOM05D003908 ORTHO05D004488 3.0e-50 201.8 117 88.0
Rhsim01G0270200 Rhododendron simsii HOM05D003908 ORTHO05D004488 6.7e-50 200.7 117 87.2
arahy.Tifrunner.gnm1.ann1.95Q6AF Arachis hypogaea HOM05D003908 ORTHO05D004488 2.0e-49 199.1 117 87.2
Aqoxy5G00367 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 2.6e-49 198.7 117 86.3
Aqoxy6G02470 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 2.6e-49 198.7 117 85.5
arahy.Tifrunner.gnm1.ann1.LT9XWZ Arachis hypogaea HOM05D003908 ORTHO05D004488 2.6e-49 198.7 117 86.3
arahy.Tifrunner.gnm1.ann1.Y10HXA Arachis hypogaea HOM05D003908 ORTHO05D004488 3.3e-49 198.4 117 86.3
Actinidia19977 Actinidia chinensis HOM05D003908 ORTHO05D004488 4.4e-49 198.0 117 86.3
Actinidia27523 Actinidia chinensis HOM05D003908 ORTHO05D004488 4.4e-49 198.0 117 86.3
CSS0045088 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.4e-49 198.0 117 90.6
MELO3C015218.2 Cucumis melo HOM05D003908 ORTHO05D004488 5.7e-49 197.6 117 86.3
CsaV3_1G042520 Cucumis sativus L. HOM05D003908 ORTHO05D004488 5.7e-49 197.6 117 86.3
Dinv34562 Davidia involucrata HOM05D003908 ORTHO05D004488 5.7e-49 197.6 117 86.3
ECA240G0363 Erigeron canadensis HOM05D003908 ORTHO05D004488 5.7e-49 197.6 117 85.5
TAR633G1149 Trochodendron aralioides HOM05D003908 ORTHO05D004488 5.7e-49 197.6 117 86.3
Psat7g086640 Pisum sativum HOM05D003908 ORTHO05D004488 7.5e-49 197.2 117 85.5
VMungo0251G3698 Vigna mungo HOM05D003908 ORTHO05D004488 7.5e-49 197.2 117 86.3
MBI07_g21062_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 1.3e-48 196.4 117 85.5
CSS0040042 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.7e-48 196.1 117 85.5
ClCG03G017370 Citrullus lanatus HOM05D003908 ORTHO05D004488 1.7e-48 196.1 117 85.5
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 2.2e-48 195.7 117 84.6
Glyma.05G135300 Glycine max HOM05D003908 ORTHO05D004488 2.2e-48 195.7 117 84.6
Glyma.08G090500 Glycine max HOM05D003908 ORTHO05D004488 2.2e-48 195.7 117 84.6
Hma1.2p1_0760F.1_g214230 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 2.2e-48 195.7 117 83.8
unitig_22.g5278 Utricularia gibba HOM05D003908 ORTHO05D004488 2.8e-48 195.3 117 85.5
Phvul.002G186900 Phaseolus vulgaris HOM05D003908 ORTHO05D004488 3.7e-48 194.9 117 84.6
Potri.005G217600 Populus trichocarpa HOM05D003908 ORTHO05D004488 3.7e-48 194.9 117 85.5
THA.LOC104825983 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 3.7e-48 194.9 117 84.6
GSVIVG01031574001 Vitis vinifera HOM05D003908 ORTHO05D004488 3.7e-48 194.9 117 83.8
MBI10_g16831_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 4.8e-48 194.5 117 83.8
Hma1.2p1_0172F.1_g076150 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 6.3e-48 194.1 117 84.6
TPR.G34752 Trifolium pratense HOM05D003908 ORTHO05D004488 6.3e-48 194.1 117 82.9
Gohir.D08G206400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 8.2e-48 193.7 117 83.8
Gorai.004G218600 Gossypium raimondii HOM05D003908 ORTHO05D004488 8.2e-48 193.7 117 83.8
Nitab4.5_0000360g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 8.2e-48 193.7 117 84.6
Nitab4.5_0002776g0060 Nicotiana tabacum HOM05D003908 ORTHO05D004488 8.2e-48 193.7 117 84.6
Sed0024016 Sechium edule HOM05D003908 ORTHO05D004488 8.2e-48 193.7 117 83.8
Thecc.01G268300 Theobroma cacao HOM05D003908 ORTHO05D004488 8.2e-48 193.7 117 84.6
CiPaw.08G123800 Carya illinoinensis HOM05D003908 ORTHO05D004488 1.1e-47 193.4 117 84.6
Duzib138G1305 Durio zibethinus HOM05D003908 ORTHO05D004488 1.1e-47 193.4 117 83.8
Hund02874 Selenicereus undatus HOM05D003908 ORTHO05D004488 1.1e-47 193.4 117 82.1
Solyc02g068450.3 Solanum lycopersicum HOM05D003908 ORTHO05D004488 1.1e-47 193.4 117 83.8
Sopen02g017590 Solanum pennellii HOM05D003908 ORTHO05D004488 1.1e-47 193.4 117 83.8
PGSC0003DMG400009421 Solanum tuberosum HOM05D003908 ORTHO05D004488 1.1e-47 193.4 117 83.8
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 1.1e-47 193.4 117 83.8
Ca_18213_v3 Cicer arietinum L. HOM05D003908 ORTHO05D004488 1.4e-47 193.0 117 83.8
Ciclev10002833m.g Citrus clementina HOM05D003908 ORTHO05D004488 1.4e-47 193.0 117 83.8
Lj1g0011223 Lotus japonicus HOM05D003908 ORTHO05D004488 1.4e-47 193.0 117 86.3
Nitab4.5_0000443g0180 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.4e-47 193.0 117 82.9
THA.LOC104801254 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 1.4e-47 193.0 117 83.8
Ah.02g111400 Amaranthus hybridus HOM05D003908 ORTHO05D004488 1.8e-47 192.6 117 82.1
ATR0787G044 Amborella trichopoda HOM05D003908 ORTHO05D004488 1.8e-47 192.6 117 83.8
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 1.8e-47 192.6 117 83.8
TWI12G1100 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 2.4e-47 192.2 117 81.2
CAN.G1299.5 Capsicum annuum HOM05D003908 ORTHO05D004488 3.1e-47 191.8 117 82.1
Cfa006421 Carpinus fangiana HOM05D003908 ORTHO05D004488 3.1e-47 191.8 117 83.8
Duzib106G0327 Durio zibethinus HOM05D003908 ORTHO05D004488 3.1e-47 191.8 117 82.9
Gohir.A08G188000 Gossypium hirsutum HOM05D003908 ORTHO05D004488 3.1e-47 191.8 117 82.9
Sabra05G0166800 Salix brachista HOM05D003908 ORTHO05D004488 3.1e-47 191.8 117 82.9
Sed0027410 Sechium edule HOM05D003908 ORTHO05D004488 3.1e-47 191.8 117 82.9
Lsat_1_v5_gn_6_91060 Lactuca sativa HOM05D003908 ORTHO05D004488 4.1e-47 191.4 117 80.3
Nn3g19495 Nelumbo nucifera HOM05D003908 ORTHO05D004488 4.1e-47 191.4 117 84.6
Sc17g0001030 Simmondsia chinensis HOM05D003908 ORTHO05D004488 4.1e-47 191.4 117 81.2
Lalb_Chr12g0209211 Lupinus albus HOM05D003908 ORTHO05D004488 5.3e-47 191.0 117 82.1
Zm00001eb330190 Zea mays HOM05D003908 ORTHO05D004488 5.3e-47 191.0 117 82.1
Atru.chr4.2009 Acer truncatum HOM05D003908 ORTHO05D004488 7.0e-47 190.7 117 82.1
Aa31LG5G2250 Aethionema arabicum HOM05D003908 ORTHO05D004488 7.0e-47 190.7 117 82.1
Lj4g0023890 Lotus japonicus HOM05D003908 ORTHO05D004488 7.0e-47 190.7 117 81.2
Thecc.05G283700 Theobroma cacao HOM05D003908 ORTHO05D004488 7.0e-47 190.7 117 82.1
Gohir.A08G215400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 9.1e-47 190.3 117 82.1
Gorai.004G246600 Gossypium raimondii HOM05D003908 ORTHO05D004488 9.1e-47 190.3 117 82.1
Peaxi162Scf00199g00925 Petunia axillaris HOM05D003908 ORTHO05D004488 9.1e-47 190.3 117 82.9
Prupe.5G006500 Prunus persica HOM05D003908 ORTHO05D004488 9.1e-47 190.3 117 82.9
EL10Ac5g10467 Beta vulgaris HOM05D003908 ORTHO05D004488 1.2e-46 189.9 117 81.2
CANSAT21G0496 Cannabis sativa HOM05D003908 ORTHO05D004488 1.2e-46 189.9 117 81.2
CDE09G0316 Ceratophyllum demersum HOM05D003908 ORTHO05D004488 1.2e-46 189.9 117 82.9
Oeu018177.1 Olea europaea HOM05D003908 ORTHO05D004488 1.2e-46 189.9 117 82.1
Prupe.6G005500 Prunus persica HOM05D003908 ORTHO05D004488 1.2e-46 189.9 117 82.9
SalBow3G3620 Salvia bowleyana HOM05D003908 ORTHO05D004488 1.2e-46 189.9 117 82.1
Manes.07G050600 Manihot esculenta HOM05D003908 ORTHO05D004488 1.6e-46 189.5 117 82.9
Atru.chr2.813 Acer truncatum HOM05D003908 ORTHO05D004488 2.0e-46 189.1 117 81.2
Thhalv10029066m.g Eutrema salsugineum HOM05D003908 ORTHO05D004488 2.0e-46 189.1 117 81.2
FvH4_6g02960 Fragaria vesca HOM05D003908 ORTHO05D004488 2.0e-46 189.1 117 82.1
BcaB01g02026 Brassica carinata HOM05D003908 ORTHO05D004488 2.7e-46 188.7 117 80.3
BcaB01g02477 Brassica carinata HOM05D003908 ORTHO05D004488 2.7e-46 188.7 117 80.3
BcaC04g24002 Brassica carinata HOM05D003908 ORTHO05D004488 2.7e-46 188.7 117 80.3
A03p30970 Brassica napus HOM05D003908 ORTHO05D004488 2.7e-46 188.7 117 80.3
A09p02050 Brassica napus HOM05D003908 ORTHO05D004488 2.7e-46 188.7 117 80.3
C09p02140 Brassica napus HOM05D003908 ORTHO05D004488 2.7e-46 188.7 117 80.3
BolC9t53144H Brassica oleracea HOM05D003908 ORTHO05D004488 2.7e-46 188.7 117 80.3
Migut.D00367 Erythranthe guttata HOM05D003908 ORTHO05D004488 3.5e-46 188.3 117 81.2
Gohir.A13G052900 Gossypium hirsutum HOM05D003908 ORTHO05D004488 3.5e-46 188.3 117 82.1
MSTRG.21514 Avicennia marina HOM05D003908 ORTHO05D004488 5.9e-46 187.6 117 80.3
BcaC01g06745 Brassica carinata HOM05D003908 ORTHO05D004488 5.9e-46 187.6 117 79.5
C03p37740 Brassica napus HOM05D003908 ORTHO05D004488 5.9e-46 187.6 117 79.5
BolC3t16064H Brassica oleracea HOM05D003908 ORTHO05D004488 5.9e-46 187.6 117 79.5
CARHR250910 Cardamine hirsuta HOM05D003908 ORTHO05D004488 5.9e-46 187.6 117 78.6
Sp6g02530 Schrenkiella parvula HOM05D003908 ORTHO05D004488 5.9e-46 187.6 117 80.3
Zm00001eb111070 Zea mays HOM05D003908 ORTHO05D004488 5.9e-46 187.6 117 80.3
FAN05G0658 Fragaria x ananassa HOM05D003908 ORTHO05D004488 7.7e-46 187.2 117 81.2
FAN14G5491 Fragaria x ananassa HOM05D003908 ORTHO05D004488 7.7e-46 187.2 117 81.2
Gorai.013G079800 Gossypium raimondii HOM05D003908 ORTHO05D004488 7.7e-46 187.2 117 82.1
Os02g0824700 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 7.7e-46 187.2 117 81.2
Os04g0137500 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 7.7e-46 187.2 117 81.2
AL6G50430 Arabidopsis lyrata HOM05D003908 ORTHO05D004488 1.0e-45 186.8 117 78.6
AT4G02620 Arabidopsis thaliana HOM05D003908 ORTHO05D004488 1.0e-45 186.8 117 78.6
Carub.0006s3452 Capsella rubella HOM05D003908 ORTHO05D004488 1.0e-45 186.8 117 78.6
COL.COLO4_15346 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.0e-45 186.8 117 81.2
FAN09G2689 Fragaria x ananassa HOM05D003908 ORTHO05D004488 1.3e-45 186.4 117 81.2
QL03p025800 Quercus lobata HOM05D003908 ORTHO05D004488 1.3e-45 186.4 117 80.3
TWI18G0751 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 1.7e-45 186.0 117 80.3
HPP92_001854 Vanilla planifolia HOM05D003908 ORTHO05D004488 1.7e-45 186.0 117 80.3
Eucgr.B02621 Eucalyptus grandis HOM05D003908 ORTHO05D004488 2.2e-45 185.7 117 82.1
Gohir.D08G232100 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.2e-45 185.7 117 81.2
Gohir.D13G069500 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.2e-45 185.7 117 81.2
RcHm_v2.0_Chr3g0451151 Rosa chinensis HOM05D003908 ORTHO05D004488 2.2e-45 185.7 117 81.2
Cpa.g.sc117.89 Carica papaya HOM05D003908 ORTHO05D004488 2.9e-45 185.3 117 80.3
Eucgr.C04384 Eucalyptus grandis HOM05D003908 ORTHO05D004488 3.8e-45 184.9 117 81.2
HPP92_018775 Vanilla planifolia HOM05D003908 ORTHO05D004488 5.0e-45 184.5 117 80.3
PGR031G1854 Punica granatum HOM05D003908 ORTHO05D004488 8.5e-45 183.7 117 82.1
BraA09t35854Z Brassica rapa HOM05D003908 ORTHO05D004488 1.1e-44 183.3 120 78.3
Cc09_g07930 Coffea canephora HOM05D003908 ORTHO05D004488 1.5e-44 183.0 117 76.9
BraA03t12274Z Brassica rapa HOM05D003908 ORTHO05D004488 3.2e-44 181.8 124 75.8
PSO210G0243 Papaver somniferum HOM05D003908 ORTHO05D004488 9.4e-44 180.3 117 81.2
PSO832G4196 Papaver somniferum HOM05D003908 ORTHO05D004488 9.4e-44 180.3 117 81.2
vmacro14877 Vaccinium macrocarpon HOM05D003908 ORTHO05D004488 2.7e-43 178.7 146 69.9
PSO135G0069 Papaver somniferum HOM05D003908 ORTHO05D004488 6.1e-43 177.6 117 79.5
C02p39240 Brassica napus HOM05D003908 ORTHO05D004488 8.0e-43 177.2 130 71.5
PSO384G1262 Papaver somniferum HOM05D003908 ORTHO05D004488 1.8e-42 176.0 117 79.5
BolC2t09935H Brassica oleracea HOM05D003908 ORTHO05D004488 2.3e-42 175.6 130 70.8
Pp3c6_17470 Physcomitrium patens HOM05D003908 ORTHO05D004488 2.3e-42 175.6 112 76.8
Pp3c25_8080 Physcomitrium patens HOM05D003908 ORTHO05D004488 3.0e-42 175.3 113 77.0
HanXRQChr03g0088561 Helianthus annuus HOM05D003908 ORTHO05D004488 5.2e-42 174.5 101 87.1
MD04G1224300 Malus domestica HOM05D003908 ORTHO05D004488 8.8e-42 173.7 101 87.1
MD12G1241000 Malus domestica HOM05D003908 ORTHO05D004488 8.8e-42 173.7 101 88.1
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 2.6e-41 172.2 101 86.1
Dinv04731 Davidia involucrata HOM05D003908 ORTHO05D004488 9.8e-41 170.2 101 84.2
Mapoly0079s0004 Marchantia polymorpha HOM05D003908 ORTHO05D004488 9.8e-41 170.2 113 73.5
CSS0024256 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.7e-40 169.5 113 76.1
CSS0029390 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.7e-40 169.5 113 76.1
CSS0046821 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.2e-40 169.1 110 77.3
Ciclev10022651m.g Citrus clementina HOM05D003908 ORTHO05D004488 2.8e-40 168.7 142 66.2
Nitab4.5_0002305g0050 Nicotiana tabacum HOM05D003908 ORTHO05D004488 3.1e-39 165.2 97 84.5
arahy.Tifrunner.gnm1.ann1.XQ21SD Arachis hypogaea HOM05D003908 ORTHO05D004488 4.1e-39 164.9 96 87.5
SMO367G0680 Selaginella moellendorffii HOM05D003908 ORTHO05D004488 5.4e-39 164.5 113 70.8
Duzib133G0635 Durio zibethinus HOM05D003908 ORTHO05D004488 9.1e-39 163.7 101 83.2
Haze_21722 Corylus avellana HOM05D003908 ORTHO05D004488 2.0e-38 162.5 117 71.8
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 4.5e-38 161.4 102 77.5
CBR_g38932 Chara braunii HOM05D003908 ORTHO05D004488 1.7e-37 159.5 109 73.4
CSS0043230 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.9e-37 158.7 110 72.7
Peaxi162Scf00198g01017 Petunia axillaris HOM05D003908 ORTHO05D004488 2.5e-36 155.6 108 75.0
PRCOL_00000544 Prasinoderma coloniale HOM05D003908 ORTHO05D004488 4.0e-34 148.3 104 68.3
MCO03G460 Micromonas commoda HOM05D003908 ORTHO05D004488 4.4e-33 144.8 105 67.6
CSS0038153 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 5.7e-33 144.4 120 63.3
Cre10.g446550 Chlamydomonas reinhardtii HOM05D003908 ORTHO05D004488 3.7e-32 141.7 113 59.3
BcaC03g16154 Brassica carinata HOM05D003908 ORTHO05D004488 3.1e-31 138.7 89 75.3
Actinidia04661 Actinidia chinensis HOM05D003908 ORTHO05D004488 3.8e-29 131.7 101 71.3
Actinidia21151 Actinidia chinensis HOM05D003908 ORTHO05D004488 3.8e-29 131.7 101 71.3
Hund09564 Selenicereus undatus HOM05D003908 ORTHO05D004488 1.5e-28 129.8 117 59.8
COL.COLO4_30210 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.2e-27 126.7 117 62.4
Lalb_Chr20g0122801 Lupinus albus HOM05D003908 ORTHO05D004488 1.2e-27 126.7 78 82.1
Haze_04363 Corylus avellana HOM05D003908 ORTHO05D004488 4.0e-26 121.7 75 82.7
TAR362G1230 Trochodendron aralioides HOM05D003908 ORTHO05D004488 1.2e-25 120.2 89 69.7
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 7.5e-25 117.5 70 81.4
COL.COLO4_06708 Corchorus olitorius HOM05D003908 ORTHO05D004488 2.9e-24 115.5 70 80.0
CiPaw.04G181400 Carya illinoinensis HOM05D003908 ORTHO05D004488 5.4e-23 111.3 75 73.3
SEGI_40634 Sequoiadendron giganteum HOM05D003908 ORTHO05D004488 1.2e-22 110.2 69 78.3
Actinidia30711 Actinidia chinensis HOM05D005044 ORTHO05D006799 6.0e-22 107.8 69 78.3
Nitab4.5_0000138g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.0e-21 107.1 65 83.1
AagrBONN_evm.TU.Sc2ySwM_368.148 Anthoceros agrestis HOM05D003908 ORTHO05D004488 1.7e-21 106.3 79 68.4
Haze_26154 Corylus avellana HOM05D003908 ORTHO05D004488 3.6e-19 98.6 108 42.6
BcaB05g23651 Brassica carinata HOM05D003908 ORTHO05D004488 3.1e-18 95.5 142 43.7
SHI24544 Sapria himalayana HOM05D003908 ORTHO05D000023 8.9e-18 94.0 68 70.6
Sopen12g012850 Solanum pennellii HOM05D003908 ORTHO05D004488 3.5e-14 82.0 58 75.9
AUR62011951 Chenopodium quinoa HOM05D003908 ORTHO05D004488 2.3e-13 79.3 48 77.1
Nitab4.5_0008708g0010 Nicotiana tabacum HOM05D003908 ORTHO05D004488 3.3e-12 75.5 54 68.5
DCAR_012514 Daucus carota HOM05D003908 ORTHO05D004488 5.6e-12 74.7 35 94.3
DCAR_018445 Daucus carota HOM05D003908 ORTHO05D004488 5.6e-12 74.7 35 94.3
Lalb_Chr20g0122811 Lupinus albus HOM05D003908 ORTHO05D004488 2.1e-11 72.8 44 77.3
Peaxi162Scf01294g00317 Petunia axillaris HOM05D003908 ORTHO05D004488 9.9e-09 63.9 31 90.3
CSS0012932 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.3e-08 63.5 41 70.7


User provided reference genes

Program Settings