Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 2.2e-145 519.6 422 100.0
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 1.7e-49 201.1 430 56.0
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 1.5e-45 188.0 331 64.4
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 4.2e-43 179.9 388 54.9
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 1.6e-42 177.9 228 82.9
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 7.8e-42 175.6 227 82.8
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 1.0e-41 175.3 359 66.0
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.3e-41 174.9 221 84.2
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.7e-41 174.5 227 82.4
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 1.1e-40 171.8 227 81.5
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 1.5e-40 171.4 230 80.4
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 1.9e-40 171.0 227 77.5
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 2.5e-40 170.6 223 81.6
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 5.6e-40 169.5 223 81.6
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 7.3e-40 169.1 227 80.6
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 2.8e-39 167.2 233 78.5
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 6.2e-39 166.0 222 81.5
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 8.1e-39 165.6 224 77.7
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 4.0e-38 163.3 222 79.3
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 4.0e-38 163.3 233 64.4
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 4.0e-38 163.3 233 75.1
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 5.3e-38 162.9 222 79.3
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 5.3e-38 162.9 215 84.7
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 9.0e-38 162.2 235 75.3
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 1.2e-37 161.8 221 81.0
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 1.2e-37 161.8 221 81.0
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 1.5e-37 161.4 329 61.1
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 2.0e-37 161.0 235 73.2
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 2.0e-37 161.0 322 62.1
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 2.0e-37 161.0 234 73.9
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 7.6e-37 159.1 194 86.1
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 7.6e-37 159.1 233 79.4
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 2.9e-36 157.1 225 80.4
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 4.9e-36 156.4 221 59.7
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 6.4e-36 156.0 235 72.3
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 1.4e-35 154.8 228 75.9
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 2.4e-35 154.1 236 72.9
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 3.2e-35 153.7 230 76.1
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 4.2e-35 153.3 233 73.4
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 4.2e-35 153.3 230 77.8
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 9.3e-35 152.1 233 73.8
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 1.6e-34 151.4 236 72.9
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 2.1e-34 151.0 334 57.5
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 6.0e-34 149.4 215 57.2
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 1.0e-33 148.7 230 73.0
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.0e-33 148.7 389 53.5
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 1.3e-33 148.3 331 59.5
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 1.8e-33 147.9 231 66.7
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 1.8e-33 147.9 224 69.6
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 2.3e-33 147.5 199 82.4
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 2.3e-33 147.5 340 54.7
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 2.3e-33 147.5 224 74.1
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 5.1e-33 146.4 199 85.9
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 6.7e-33 146.0 350 56.0
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 1.5e-32 144.8 358 55.3
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 1.9e-32 144.4 229 75.5
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 1.9e-32 144.4 322 60.6
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 1.9e-32 144.4 360 56.9
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 2.5e-32 144.1 224 67.4
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 3.3e-32 143.7 233 70.0
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 3.3e-32 143.7 217 56.2
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 3.3e-32 143.7 184 88.6
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 4.3e-32 143.3 226 73.0
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 7.4e-32 142.5 227 70.9
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 7.4e-32 142.5 228 75.4
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 7.4e-32 142.5 227 68.3
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 9.6e-32 142.1 219 78.1
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 9.6e-32 142.1 233 65.7
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 9.6e-32 142.1 228 72.8
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 1.3e-31 141.7 365 50.4
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 1.3e-31 141.7 363 51.8
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 2.8e-31 140.6 364 53.8
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 3.7e-31 140.2 224 77.7
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 6.2e-31 139.4 231 74.9
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 6.2e-31 139.4 335 52.2
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 8.1e-31 139.0 363 51.8
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 8.1e-31 139.0 236 70.3
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 1.1e-30 138.7 221 74.2
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 1.1e-30 138.7 230 71.7
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 1.4e-30 138.3 329 55.0
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 1.4e-30 138.3 367 52.3
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 4.0e-30 136.7 225 72.4
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 4.0e-30 136.7 329 54.1
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 6.9e-30 136.0 329 54.4
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 9.0e-30 135.6 224 71.4
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 1.2e-29 135.2 224 67.9
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 1.1e-27 128.6 207 80.7
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 3.2e-27 127.1 225 73.3
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 7.1e-27 125.9 214 74.8
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 9.3e-27 125.6 423 43.7
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 1.6e-26 124.8 235 39.1
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 3.5e-26 123.6 355 54.6
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 4.6e-26 123.2 193 75.1
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 1.3e-25 121.7 229 70.3
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 2.3e-25 120.9 323 54.8
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 1.5e-24 118.2 338 54.7
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 3.3e-24 117.1 222 50.9
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 3.7e-23 113.6 434 29.5
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 8.2e-23 112.5 199 75.4
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 2.4e-22 110.9 79 73.4
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 4.0e-22 110.2 66 83.3
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 1.5e-21 108.2 92 63.0
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.5e-21 108.2 93 65.6
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 7.6e-21 105.9 219 70.8
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 7.6e-21 105.9 94 62.8
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 2.2e-20 104.4 95 63.2
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 4.9e-20 103.2 241 66.0
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 1.4e-19 101.7 99 55.6
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 4.2e-19 100.1 219 69.4
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 5.5e-19 99.8 335 52.2
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 5.5e-19 99.8 193 74.6
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 2.1e-18 97.8 95 56.8
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 2.7e-18 97.4 172 59.3
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 1.8e-17 94.7 332 51.2
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 6.5e-12 76.3 67 52.2
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 1.9e-11 74.7 36 100.0
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 1.9e-11 74.7 67 52.2
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 3.2e-11 73.9 67 52.2
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 1.4e-09 68.6 68 51.5
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 1.4e-09 68.6 68 51.5
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 2.3e-09 67.8 61 52.5
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.9e-09 67.0 61 50.8
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 8.8e-09 65.9 67 49.3
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 1.5e-08 65.1 67 44.8
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 2.0e-08 64.7 61 45.9
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 3.3e-08 63.9 61 49.2
Actinidia20591 Actinidia chinensis HOM05D006755 ORTHO05D057719 5.7e-08 63.2 239 30.1
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 5.7e-08 63.2 61 47.5
Nn5g27110 Nelumbo nucifera HOM05D006755 ORTHO05D008472 5.7e-08 63.2 146 76.7
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 5.7e-08 63.2 61 47.5
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 5.7e-08 63.2 62 50.0
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 7.4e-08 62.8 61 47.5
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 9.7e-08 62.4 61 47.5
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.7e-08 62.4 61 47.5
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 9.7e-08 62.4 43 72.1
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 2.2e-07 61.2 35 85.7
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 2.2e-07 61.2 67 43.3
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 2.2e-07 61.2 67 43.3
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 2.8e-07 60.8 62 48.4
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 3.7e-07 60.5 62 45.2
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 4.8e-07 60.1 67 43.3
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 1.1e-06 58.9 62 45.2
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 1.8e-06 58.2 102 34.3
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 2.4e-06 57.8 48 52.1
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 2.4e-06 57.8 88 37.5


User provided reference genes

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