Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044724 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 6.5e-81 303.9 143 100.0
CSS0024873 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 4.4e-69 264.6 143 89.5
CSS0050092 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 3.1e-67 258.5 171 76.6
CSS0004487 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.5e-66 256.1 153 84.3
CSS0031502 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 2.2e-65 252.3 167 76.6
CSS0028931 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 5.0e-65 251.1 167 76.6
CSS0000454 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.9e-64 249.2 167 75.4
CSS0050453 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 4.2e-64 248.1 167 75.4
CSS0033656 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 4.7e-63 244.6 147 82.3
CSS0016678 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.0e-49 200.3 168 64.3
Rhsim10G0191400 Rhododendron simsii HOM05D000649 ORTHO05D000513 3.7e-28 128.6 90 66.7
vmacro20607 Vaccinium macrocarpon HOM05D000649 ORTHO05D000513 1.4e-27 126.7 102 59.8
Actinidia22858 Actinidia chinensis HOM05D000649 ORTHO05D000513 1.6e-23 113.2 91 62.6
Cpa.g.sc26.10 Carica papaya HOM05D000649 ORTHO05D000513 1.1e-22 110.5 103 49.5
TAR628G0170 Trochodendron aralioides HOM05D000649 ORTHO05D000513 1.1e-22 110.5 90 55.6
Hma1.2p1_0085F.1_g044350 Hydrangea macrophylla HOM05D000649 ORTHO05D000513 4.0e-22 108.6 90 54.4
Manes.05G127900 Manihot esculenta HOM05D000649 ORTHO05D000513 3.7e-20 102.1 97 48.5
Nn5g31051 Nelumbo nucifera HOM05D000649 ORTHO05D000513 3.7e-20 102.1 90 53.3
TAR381G0051 Trochodendron aralioides HOM05D000649 ORTHO05D000513 3.7e-20 102.1 96 47.9
Prupe.5G005300 Prunus persica HOM05D000649 ORTHO05D000513 8.3e-20 100.9 119 43.7
CiPaw.07G133300 Carya illinoinensis HOM05D000649 ORTHO05D000513 1.1e-19 100.5 90 50.0
Potri.002G004600 Populus trichocarpa HOM05D000649 ORTHO05D000513 1.1e-19 100.5 91 52.7
Hma1.2p1_0699F.1_g205730 Hydrangea macrophylla HOM05D000649 ORTHO05D000513 2.4e-19 99.4 77 54.5
TAR376G0834 Trochodendron aralioides HOM05D000649 ORTHO05D000513 2.4e-19 99.4 90 48.9
Atru.chr13.58 Acer truncatum HOM05D000649 ORTHO05D000513 7.0e-19 97.8 90 50.0
CSS0025109 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D000513 9.2e-19 97.4 90 48.9
Haze_22865 Corylus avellana HOM05D000649 ORTHO05D000513 9.2e-19 97.4 90 47.8
Actinidia17079 Actinidia chinensis HOM05D000649 ORTHO05D000513 1.6e-18 96.7 77 54.5
Prupe.7G186900 Prunus persica HOM05D000649 ORTHO05D000513 1.6e-18 96.7 90 48.9
THA.LOC104813737 Tarenaya hassleriana HOM05D000649 ORTHO05D000513 1.6e-18 96.7 79 51.9
Dinv13765 Davidia involucrata HOM05D000649 ORTHO05D000513 2.1e-18 96.3 90 48.9
Cfa014139 Carpinus fangiana HOM05D001065 ORTHO05D000513 2.7e-18 95.9 90 47.8
MD06G1004000 Malus domestica HOM05D000649 ORTHO05D000513 2.7e-18 95.9 107 44.9
Rhsim06G0003000 Rhododendron simsii HOM05D000649 ORTHO05D000513 4.6e-18 95.1 80 51.2
CARHR070020 Cardamine hirsuta HOM05D000649 ORTHO05D000513 6.0e-18 94.7 79 51.9
AL2G36600 Arabidopsis lyrata HOM05D000649 ORTHO05D000513 7.8e-18 94.4 79 51.9
CiPaw.08G077300 Carya illinoinensis HOM05D000649 ORTHO05D000513 1.0e-17 94.0 108 41.7
Nitab4.5_0010897g0010 Nicotiana tabacum HOM05D000649 ORTHO05D000513 1.3e-17 93.6 77 53.2
VMungo1309G1435 Vigna mungo HOM05D000649 ORTHO05D000513 1.3e-17 93.6 90 46.7
Actinidia15526 Actinidia chinensis HOM05D000649 ORTHO05D000513 1.7e-17 93.2 90 46.7
Cc10_g00240 Coffea canephora HOM05D000649 ORTHO05D000513 1.7e-17 93.2 109 39.4
Glyma.06G014300 Glycine max HOM05D000649 ORTHO05D000513 1.7e-17 93.2 90 46.7
Sabra02G0003100 Salix brachista HOM05D000649 ORTHO05D000513 1.7e-17 93.2 90 48.9
Sc26g0004760 Simmondsia chinensis HOM05D000649 ORTHO05D000513 1.7e-17 93.2 90 46.7
Sopen04g036410 Solanum pennellii HOM05D000649 ORTHO05D000513 1.7e-17 93.2 84 48.8
PGSC0003DMG400009999 Solanum tuberosum HOM05D000649 ORTHO05D000513 1.7e-17 93.2 84 50.0
TWI36G1513 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 1.7e-17 93.2 90 50.0
Lj2C505G3 Lonicera japonica HOM05D000649 ORTHO05D000513 2.3e-17 92.8 98 46.9
Carub.0002s2338 Capsella rubella HOM05D000649 ORTHO05D000513 3.0e-17 92.4 79 50.6
A07p42130 Brassica napus HOM05D000649 ORTHO05D000513 3.9e-17 92.0 79 51.9
PSO675G8806 Papaver somniferum HOM05D000649 ORTHO05D000513 3.9e-17 92.0 108 40.7
AT1G76460 Arabidopsis thaliana HOM05D000649 ORTHO05D000513 5.0e-17 91.7 79 49.4
Sp5g31630 Schrenkiella parvula HOM05D000649 ORTHO05D000513 5.0e-17 91.7 79 50.6
Aqoxy6G02997 Aquilegia oxysepala HOM05D000649 ORTHO05D000513 6.6e-17 91.3 99 47.5
Manes.18G001800 Manihot esculenta HOM05D000649 ORTHO05D000513 6.6e-17 91.3 76 53.9
arahy.Tifrunner.gnm1.ann1.T7FLND Arachis hypogaea HOM05D000649 ORTHO05D000513 8.6e-17 90.9 90 45.6
Thhalv10018983m.g Eutrema salsugineum HOM05D000649 ORTHO05D000513 8.6e-17 90.9 79 49.4
Lalb_Chr08g0246551 Lupinus albus HOM05D000649 ORTHO05D000513 8.6e-17 90.9 91 46.2
Lalb_Chr11g0061361 Lupinus albus HOM05D000649 ORTHO05D000513 8.6e-17 90.9 90 45.6
Nn6g31618 Nelumbo nucifera HOM05D000649 ORTHO05D000513 8.6e-17 90.9 90 48.9
THA.LOC104812008 Tarenaya hassleriana HOM05D000649 ORTHO05D000513 8.6e-17 90.9 79 48.1
TWI56G0525 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 8.6e-17 90.9 114 43.9
Lalb_Chr23g0265501 Lupinus albus HOM05D000649 ORTHO05D000513 1.1e-16 90.5 69 53.6
Ca_04244_v3 Cicer arietinum L. HOM05D000649 ORTHO05D000513 1.5e-16 90.1 114 40.4
Ca_15383_v3 Cicer arietinum L. HOM05D000649 ORTHO05D000513 1.5e-16 90.1 114 40.4
MBI01_g28406_MAGBIO Magnolia biondii HOM05D000649 ORTHO05D000513 1.5e-16 90.1 106 46.2
Eucgr.J02558 Eucalyptus grandis HOM05D000649 ORTHO05D000513 1.9e-16 89.7 90 44.4
FAN23G1151 Fragaria x ananassa HOM05D000649 ORTHO05D000513 1.9e-16 89.7 77 53.2
FAN26G0796 Fragaria x ananassa HOM05D000649 ORTHO05D000513 1.9e-16 89.7 77 53.2
Psat5g008440 Pisum sativum HOM05D000649 ORTHO05D000513 1.9e-16 89.7 90 45.6
FAN23G2635 Fragaria x ananassa HOM05D000649 ORTHO05D000513 2.5e-16 89.4 77 53.2
FAN28G0025 Fragaria x ananassa HOM05D000649 ORTHO05D000513 2.5e-16 89.4 98 48.0
QL02p015755 Quercus lobata HOM05D000649 ORTHO05D000513 2.5e-16 89.4 85 47.1
Thecc.08G099600 Theobroma cacao HOM05D000649 ORTHO05D000513 2.5e-16 89.4 90 42.2
Dinv05494 Davidia involucrata HOM05D000649 ORTHO05D000513 3.3e-16 89.0 90 42.2
FvH4_1g09990 Fragaria vesca HOM05D000649 ORTHO05D000513 3.3e-16 89.0 77 53.2
Glyma.04G014300 Glycine max HOM05D000649 ORTHO05D000513 3.3e-16 89.0 91 46.2
DCAR_016799 Daucus carota HOM05D000649 ORTHO05D000513 4.3e-16 88.6 83 49.4
MD00G1148300 Malus domestica HOM05D000649 ORTHO05D000513 4.3e-16 88.6 90 43.3
Potri.005G256700 Populus trichocarpa HOM05D000649 ORTHO05D000513 4.3e-16 88.6 91 45.1
Medtr3g116130 Medicago truncatula HOM05D000649 ORTHO05D000513 5.6e-16 88.2 91 45.1
TWI12G0980 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 5.6e-16 88.2 90 47.8
Lj1g0016936 Lotus japonicus HOM05D000649 ORTHO05D000513 7.3e-16 87.8 90 43.3
Phvul.009G008600 Phaseolus vulgaris HOM05D000649 ORTHO05D000513 7.3e-16 87.8 90 45.6
Sabra05G0198800 Salix brachista HOM05D000649 ORTHO05D000513 7.3e-16 87.8 78 50.0
BcaC08g47242 Brassica carinata HOM05D000649 ORTHO05D000513 1.2e-15 87.0 79 49.4
C06p50700 Brassica napus HOM05D000649 ORTHO05D000513 1.2e-15 87.0 79 49.4
BolC6t40096H Brassica oleracea HOM05D000649 ORTHO05D000513 1.2e-15 87.0 79 49.4
Ciclev10003364m.g Citrus clementina HOM05D000649 ORTHO05D000513 1.2e-15 87.0 102 41.2
COL.COLO4_12296 Corchorus olitorius HOM05D000649 ORTHO05D000513 1.2e-15 87.0 90 42.2
PSO541G2048 Papaver somniferum HOM05D000649 ORTHO05D000513 1.2e-15 87.0 108 38.0
RcHm_v2.0_Chr2g0096781 Rosa chinensis HOM05D000649 ORTHO05D000513 2.8e-15 85.9 77 49.4
BcaC08g47153 Brassica carinata HOM05D000649 ORTHO05D000513 6.2e-15 84.7 79 46.8
Gohir.A01G101800 Gossypium hirsutum HOM05D000649 ORTHO05D000513 8.1e-15 84.3 90 41.1
Gohir.D01G086900 Gossypium hirsutum HOM05D000649 ORTHO05D000513 8.1e-15 84.3 115 38.3
Gorai.002G112500 Gossypium raimondii HOM05D000649 ORTHO05D000513 8.1e-15 84.3 115 38.3
BraA07t31742Z Brassica rapa HOM05D000649 ORTHO05D000513 1.1e-14 84.0 79 48.1
Oeu042506.1 Olea europaea HOM05D000649 ORTHO05D000513 1.1e-14 84.0 108 37.0
vmacro21765 Vaccinium macrocarpon HOM05D000649 ORTHO05D000513 1.1e-14 84.0 91 45.1
Aa31LG4G6550 Aethionema arabicum HOM05D000649 ORTHO05D000513 1.4e-14 83.6 80 47.5
Duzib116G0655 Durio zibethinus HOM05D000649 ORTHO05D000513 1.4e-14 83.6 77 45.5
Migut.N02989 Erythranthe guttata HOM05D000649 ORTHO05D000513 2.3e-14 82.8 90 38.9
PSO170G5065 Papaver somniferum HOM05D000649 ORTHO05D000513 2.3e-14 82.8 90 45.6
PGR083G0393 Punica granatum HOM05D000649 ORTHO05D000513 2.3e-14 82.8 107 40.2
DCAR_013943 Daucus carota HOM05D000649 ORTHO05D014141 3.1e-14 82.4 95 41.1
Duzib093G1313 Durio zibethinus HOM05D000649 ORTHO05D000513 4.0e-14 82.0 97 41.2
SalBow6G0043 Salvia bowleyana HOM05D000649 ORTHO05D000513 4.0e-14 82.0 77 44.2
SGA_v2.0_scaffold220G42643 Striga asiatica HOM05D000649 ORTHO05D000513 4.0e-14 82.0 106 34.9
Aa31LG7G5040 Aethionema arabicum HOM05D000649 ORTHO05D000513 5.2e-14 81.6 108 40.7
HanXRQChr16g0532161 Helianthus annuus HOM05D000649 ORTHO05D000513 5.2e-14 81.6 85 44.7
Oeu039086.1 Olea europaea HOM05D000649 ORTHO05D014141 5.2e-14 81.6 98 37.8
PSO017G1691 Papaver somniferum HOM05D000649 ORTHO05D000513 6.8e-14 81.3 90 45.6
SEGI_17423 Sequoiadendron giganteum HOM05D000649 ORTHO05D000513 6.8e-14 81.3 80 43.8
ClCG08G009160 Citrullus lanatus HOM05D000649 ORTHO05D000513 8.9e-14 80.9 90 42.2
TPR.G38167 Trifolium pratense HOM05D000649 ORTHO05D000513 8.9e-14 80.9 72 50.0
arahy.Tifrunner.gnm1.ann1.63TST2 Arachis hypogaea HOM05D000649 ORTHO05D000513 1.5e-13 80.1 91 42.9
ECA246G2133 Erigeron canadensis HOM05D000649 ORTHO05D000513 2.0e-13 79.7 85 42.4
CDE05G1430 Ceratophyllum demersum HOM05D000649 ORTHO05D000513 3.4e-13 79.0 75 42.7
MELO3C026514.2 Cucumis melo HOM05D000649 ORTHO05D000513 3.4e-13 79.0 90 41.1
CsaV3_6G035960 Cucumis sativus L. HOM05D000649 ORTHO05D000513 3.4e-13 79.0 90 41.1
MD15G1228000 Malus domestica HOM05D000649 ORTHO05D000513 3.4e-13 79.0 69 52.2
MSTRG.24518 Avicennia marina HOM05D000649 ORTHO05D000513 4.4e-13 78.6 97 35.1
Oeu013568.1 Olea europaea HOM05D000649 ORTHO05D000513 7.5e-13 77.8 108 34.3
ATR0605G253 Amborella trichopoda HOM05D000649 ORTHO05D000513 9.9e-13 77.4 70 44.3
Eucgr.I02201 Eucalyptus grandis HOM05D000649 ORTHO05D000513 9.9e-13 77.4 81 44.4
Sed0009990 Sechium edule HOM05D000649 ORTHO05D000513 1.3e-12 77.0 90 38.9
Oeu030360.2 Olea europaea HOM05D000649 ORTHO05D000513 1.7e-12 76.6 83 44.6
Eucgr.F03603 Eucalyptus grandis HOM05D000649 ORTHO05D000513 2.2e-12 76.3 91 44.0
HanXRQChr09g0241921 Helianthus annuus HOM05D000649 ORTHO05D000513 2.2e-12 76.3 94 41.5
Thhalv10008444m.g Eutrema salsugineum HOM05D000649 ORTHO05D000513 3.7e-12 75.5 101 41.6
MD02G1108800 Malus domestica HOM05D000649 ORTHO05D000513 3.7e-12 75.5 69 49.3
RcHm_v2.0_Chr7g0216701 Rosa chinensis HOM05D000649 ORTHO05D000513 3.7e-12 75.5 90 42.2
unitig_578.g16241 Utricularia gibba HOM05D000649 ORTHO05D000513 4.9e-12 75.1 81 40.7
ECA232G1614 Erigeron canadensis HOM05D000649 ORTHO05D000513 6.4e-12 74.7 94 42.6
Lj4C242G3 Lonicera japonica HOM05D000649 ORTHO05D000513 8.3e-12 74.3 83 41.0
AT1G20880 Arabidopsis thaliana HOM05D000649 ORTHO05D000513 1.1e-11 73.9 95 42.1
MSTRG.22081 Avicennia marina HOM05D000649 ORTHO05D000513 1.4e-11 73.6 85 40.0
ECA238G0875 Erigeron canadensis HOM05D000649 ORTHO05D000513 1.4e-11 73.6 98 35.7
AL1G33900 Arabidopsis lyrata HOM05D000649 ORTHO05D000513 1.9e-11 73.2 102 40.2
Ciclev10026337m.g Citrus clementina HOM05D000649 ORTHO05D000513 1.9e-11 73.2 86 37.2
Cc07_g12210 Coffea canephora HOM05D000649 ORTHO05D000513 1.9e-11 73.2 90 46.7
MBI04_g31210_MAGBIO Magnolia biondii HOM05D000649 ORTHO05D000513 1.9e-11 73.2 64 48.4
Manes.02G116700 Manihot esculenta HOM05D000649 ORTHO05D000513 2.4e-11 72.8 91 41.8
Carub.0001s2035 Capsella rubella HOM05D000649 ORTHO05D000513 3.2e-11 72.4 92 40.2
DCAR_009860 Daucus carota HOM05D000649 ORTHO05D000513 3.2e-11 72.4 91 41.8
AUR62035172 Chenopodium quinoa HOM05D000649 ORTHO05D000513 4.1e-11 72.0 98 40.8
PGR031G0467 Punica granatum HOM05D000649 ORTHO05D000513 5.4e-11 71.6 106 34.0
CDE05G1023 Ceratophyllum demersum HOM05D000649 ORTHO05D000513 7.1e-11 71.2 66 43.9
Sed0025783 Sechium edule HOM05D000649 ORTHO05D000513 1.2e-10 70.5 77 41.6
unitig_8.g4815 Utricularia gibba HOM05D000649 ORTHO05D000513 1.2e-10 70.5 81 39.5
CANSAT25G2852 Cannabis sativa HOM05D000649 ORTHO05D000513 2.1e-10 69.7 75 41.3
FAN18G2507 Fragaria x ananassa HOM05D000649 ORTHO05D000513 7.8e-10 67.8 89 38.2
Lj4A240G32 Lonicera japonica HOM05D000649 ORTHO05D000513 7.8e-10 67.8 82 39.0
Hma1.2p1_0711F.1_g207530 Hydrangea macrophylla HOM05D000649 ORTHO05D014141 1.3e-09 67.0 54 53.7
Lsat_1_v5_gn_9_48300 Lactuca sativa HOM05D000649 ORTHO05D000513 2.3e-09 66.2 101 41.6
BcaB03g14296 Brassica carinata HOM05D000649 ORTHO05D000513 3.0e-09 65.9 82 40.2
BraA08t34853Z Brassica rapa HOM05D000649 ORTHO05D000513 3.9e-09 65.5 83 39.8
FAN04G1603 Fragaria x ananassa HOM05D000649 ORTHO05D000513 3.9e-09 65.5 89 37.1
FAN08G0068 Fragaria x ananassa HOM05D000649 ORTHO05D000513 3.9e-09 65.5 91 38.5
FvH4_5g26080 Fragaria vesca HOM05D000649 ORTHO05D000513 5.1e-09 65.1 90 37.8
FAN13G1717 Fragaria x ananassa HOM05D000649 ORTHO05D000513 5.1e-09 65.1 90 37.8
Eucgr.F01820 Eucalyptus grandis HOM05D000649 ORTHO05D000513 8.6e-09 64.3 79 40.5
BcaB07g32083 Brassica carinata HOM05D000649 ORTHO05D000513 3.3e-08 62.4 77 39.0
BcaC07g39059 Brassica carinata HOM05D000649 ORTHO05D000513 9.5e-08 60.8 80 37.5
SGA_v2.0_scaffold227G43163 Striga asiatica HOM05D000649 ORTHO05D000513 9.5e-08 60.8 93 31.2
HPP92_020532 Vanilla planifolia HOM05D000649 ORTHO05D014141 1.2e-07 60.5 63 38.1
BcaC06g34844 Brassica carinata HOM05D000649 ORTHO05D000513 2.8e-07 59.3 100 35.0
A07p15430 Brassica napus HOM05D000649 ORTHO05D000513 2.8e-07 59.3 101 34.7
C07p22740 Brassica napus HOM05D000649 ORTHO05D000513 2.8e-07 59.3 100 35.0
C08p20430 Brassica napus HOM05D000649 ORTHO05D000513 2.8e-07 59.3 80 36.2
BolC7t42806H Brassica oleracea HOM05D000649 ORTHO05D000513 2.8e-07 59.3 100 35.0
BolC8t49672H Brassica oleracea HOM05D000649 ORTHO05D000513 2.8e-07 59.3 80 36.2
BraA07t29282Z Brassica rapa HOM05D000649 ORTHO05D000513 2.8e-07 59.3 101 34.7
Lsat_1_v5_gn_3_69020 Lactuca sativa HOM05D000649 ORTHO05D000513 3.1e-06 55.8 103 36.9
Os02g0714000 Oryza sativa ssp. japonica HOM05D000649 ORTHO05D000513 4.0e-06 55.5 94 34.0


User provided reference genes

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