Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.6e-54 215.3 125 100.0
CSS0015607 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 7.3e-28 127.5 127 63.8
CSS0001263 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.9e-24 115.5 125 66.4
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.9e-24 115.5 135 63.7
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 3.5e-22 108.6 135 55.6
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 4.6e-22 108.2 124 63.7
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 3.1e-10 68.9 142 41.5
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 3.1e-10 68.9 138 40.6
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 3.1e-10 68.9 138 40.6
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 4.0e-10 68.6 130 44.6
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 5.2e-10 68.2 138 39.9
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 6.8e-10 67.8 146 37.7
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 1.5e-09 66.6 63 61.9
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 2.0e-09 66.2 141 38.3
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 2.0e-09 66.2 142 38.0
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 3.4e-09 65.5 138 39.9
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 4.4e-09 65.1 142 39.4
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 4.4e-09 65.1 120 39.2
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 5.8e-09 64.7 150 39.3
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 5.8e-09 64.7 134 41.8
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 7.5e-09 64.3 155 37.4
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 9.9e-09 63.9 129 39.5
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 3.7e-08 62.0 140 32.9
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 4.9e-08 61.6 142 36.6
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 6.4e-08 61.2 60 63.3
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 6.4e-08 61.2 146 37.7
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.1e-07 60.5 138 31.9
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.1e-07 60.5 138 31.9
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 1.1e-07 60.5 148 36.5
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.1e-07 60.5 144 36.8
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 3.2e-07 58.9 138 31.2
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 4.1e-07 58.5 143 36.4
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 4.1e-07 58.5 85 49.4
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 5.4e-07 58.2 147 37.4
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 5.4e-07 58.2 147 37.4
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.4e-07 58.2 87 42.5
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.4e-07 58.2 87 42.5
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.4e-07 58.2 138 31.2
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 7.1e-07 57.8 141 44.0
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 7.1e-07 57.8 139 36.7
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 9.2e-07 57.4 147 42.2
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.2e-06 57.0 146 38.4
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.6e-06 56.6 144 36.8
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 2.1e-06 56.2 58 58.6
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 2.1e-06 56.2 144 38.9
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.7e-06 55.8 133 34.6
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 2.7e-06 55.8 122 43.4
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 4.6e-06 55.1 155 34.8
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 4.6e-06 55.1 133 36.8
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 6.0e-06 54.7 146 32.9
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 7.8e-06 54.3 135 34.1
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 7.8e-06 54.3 135 34.1
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 7.8e-06 54.3 120 38.3


User provided reference genes

Program Settings