Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044711 Camellia sinensis var. sinensis HOM05D000826 ORTHO05D006448 5.7e-65 250.8 125 100.0
CSS0017067 Camellia sinensis var. sinensis HOM05D000826 ORTHO05D006448 2.0e-62 242.3 125 96.8
CSS0028491 Camellia sinensis var. sinensis HOM05D000826 ORTHO05D006448 3.8e-61 238.0 125 95.2
CSS0034369 Camellia sinensis var. sinensis HOM05D000826 ORTHO05D006448 4.7e-59 231.1 116 98.3
CiPaw.09G121700 Carya illinoinensis HOM05D000826 ORTHO05D006448 1.8e-50 202.6 123 78.0
Nitab4.5_0006038g0020 Nicotiana tabacum HOM05D000826 ORTHO05D006448 6.7e-50 200.7 125 79.2
Actinidia39586 Actinidia chinensis HOM05D000826 ORTHO05D006448 8.8e-50 200.3 122 82.0
Nitab4.5_0005094g0040 Nicotiana tabacum HOM05D000826 ORTHO05D006448 1.2e-49 199.9 125 78.4
RcHm_v2.0_Chr5g0014471 Rosa chinensis HOM05D000826 ORTHO05D006448 2.0e-49 199.1 121 76.9
Dinv21557 Davidia involucrata HOM05D000826 ORTHO05D006448 2.2e-48 195.7 125 76.8
MD10G1260100 Malus domestica HOM05D000826 ORTHO05D006448 2.2e-48 195.7 124 74.2
FAN21G2333 Fragaria x ananassa HOM05D000826 ORTHO05D006448 2.8e-48 195.3 124 74.2
Sopen08g010730 Solanum pennellii HOM05D000826 ORTHO05D006448 3.7e-48 194.9 125 76.8
Cc00_g12600 Coffea canephora HOM05D000826 ORTHO05D006448 4.8e-48 194.5 125 76.0
Dinv32232 Davidia involucrata HOM05D000826 ORTHO05D006448 6.3e-48 194.1 125 76.8
FvH4_3g05240 Fragaria vesca HOM05D000826 ORTHO05D006448 6.3e-48 194.1 124 74.2
FAN11G2713 Fragaria x ananassa HOM05D000826 ORTHO05D006448 6.3e-48 194.1 124 74.2
Prupe.4G083300 Prunus persica HOM05D000826 ORTHO05D006448 8.2e-48 193.7 119 76.5
Solyc08g048450.4 Solanum lycopersicum HOM05D000826 ORTHO05D006448 1.4e-47 193.0 125 76.0
PGSC0003DMG400029872 Solanum tuberosum HOM05D000826 ORTHO05D006448 1.8e-47 192.6 125 76.0
TAR627G0038 Trochodendron aralioides HOM05D000826 ORTHO05D006448 1.8e-47 192.6 125 75.2
FAN16G3098 Fragaria x ananassa HOM05D000826 ORTHO05D006448 3.1e-47 191.8 123 73.2
GSVIVG01021525001 Vitis vinifera HOM05D000826 ORTHO05D006448 5.3e-47 191.0 123 73.2
CiPaw.10G090200 Carya illinoinensis HOM05D000826 ORTHO05D006448 7.0e-47 190.7 123 72.4
MD05G1281300 Malus domestica HOM05D000826 ORTHO05D006448 2.0e-46 189.1 124 72.6
Atru.chr10.1167 Acer truncatum HOM05D000826 ORTHO05D006448 2.7e-46 188.7 121 75.2
CSS0030893 Camellia sinensis var. sinensis HOM05D000826 ORTHO05D006448 5.9e-46 187.6 97 95.9
Lj2A320T45 Lonicera japonica HOM05D000826 ORTHO05D006448 5.9e-46 187.6 122 72.1
Thecc.06G147800 Theobroma cacao HOM05D000826 ORTHO05D006448 5.9e-46 187.6 124 71.8
Cfa000923 Carpinus fangiana HOM05D000826 ORTHO05D006448 7.7e-46 187.2 123 69.9
MSTRG.7501 Avicennia marina HOM05D000826 ORTHO05D006448 2.2e-45 185.7 125 71.2
QL05p055819 Quercus lobata HOM05D000826 ORTHO05D006448 3.8e-45 184.9 123 69.9
ClCG03G006680 Citrullus lanatus HOM05D000826 ORTHO05D006448 5.0e-45 184.5 124 71.8
Sc05g0006070 Simmondsia chinensis HOM05D000826 ORTHO05D006448 6.5e-45 184.1 123 73.2
Hma1.2p1_0020F.1_g014180 Hydrangea macrophylla HOM05D000826 ORTHO05D006448 8.5e-45 183.7 125 70.4
Hma1.2p1_0020F.1_g014190 Hydrangea macrophylla HOM05D000826 ORTHO05D006448 8.5e-45 183.7 125 70.4
MBI02_g03072_MAGBIO Magnolia biondii HOM05D000826 ORTHO05D006448 1.1e-44 183.3 123 71.5
Nn3g20410 Nelumbo nucifera HOM05D000826 ORTHO05D006448 1.1e-44 183.3 121 71.9
Gohir.D06G143500 Gossypium hirsutum HOM05D000826 ORTHO05D006448 1.9e-44 182.6 122 69.7
Sc05g0006080 Simmondsia chinensis HOM05D000826 ORTHO05D006448 1.9e-44 182.6 123 71.5
Manes.17G072300 Manihot esculenta HOM05D000826 ORTHO05D006448 2.5e-44 182.2 124 71.0
Gohir.A06G138700 Gossypium hirsutum HOM05D000826 ORTHO05D006448 3.2e-44 181.8 124 68.5
Gorai.010G167200 Gossypium raimondii HOM05D000826 ORTHO05D006448 4.2e-44 181.4 124 68.5
Manes.15G123600 Manihot esculenta HOM05D000826 ORTHO05D006448 5.5e-44 181.0 123 71.5
TWI09G1644 Tripterygium wilfordii HOM05D000826 ORTHO05D006448 7.2e-44 180.6 125 71.2
vmacro03342 Vaccinium macrocarpon HOM05D000826 ORTHO05D006448 7.2e-44 180.6 118 72.0
COL.COLO4_31038 Corchorus olitorius HOM05D000826 ORTHO05D006448 9.4e-44 180.3 123 70.7
Sabra11G0065900 Salix brachista HOM05D000826 ORTHO05D006448 9.4e-44 180.3 119 72.3
Duzib160G0889 Durio zibethinus HOM05D000826 ORTHO05D006448 1.2e-43 179.9 124 70.2
Potri.011G082800 Populus trichocarpa HOM05D000826 ORTHO05D006448 2.1e-43 179.1 119 71.4
MELO3C002752.2 Cucumis melo HOM05D000826 ORTHO05D006448 2.7e-43 178.7 123 69.1
CsaV3_1G004640 Cucumis sativus L. HOM05D000826 ORTHO05D006448 2.7e-43 178.7 123 68.3
SGA_v2.0_scaffold1G00195 Striga asiatica HOM05D000826 ORTHO05D006448 2.7e-43 178.7 127 71.7
SalBow8G2423 Salvia bowleyana HOM05D000826 ORTHO05D006448 3.6e-43 178.3 129 69.0
Eucgr.D00287 Eucalyptus grandis HOM05D000826 ORTHO05D006448 8.0e-43 177.2 121 70.2
Rhsim13G0115600 Rhododendron simsii HOM05D000826 ORTHO05D006448 1.0e-42 176.8 118 72.0
Oeu040098.1 Olea europaea HOM05D000826 ORTHO05D006448 2.3e-42 175.6 125 68.8
AUR62002697 Chenopodium quinoa HOM05D000826 ORTHO05D006448 4.0e-42 174.9 119 68.9
DCAR_007881 Daucus carota HOM05D000826 ORTHO05D006448 4.0e-42 174.9 125 69.6
Migut.M00893 Erythranthe guttata HOM05D000826 ORTHO05D006448 5.2e-42 174.5 126 68.3
Ah.09g232510 Amaranthus hybridus HOM05D000826 ORTHO05D006448 6.8e-42 174.1 125 67.2
Aqoxy1G01679 Aquilegia oxysepala HOM05D000826 ORTHO05D006448 1.2e-41 173.3 121 65.3
Hund21539 Selenicereus undatus HOM05D000826 ORTHO05D006448 1.2e-41 173.3 121 67.8
CANSAT35G1538 Cannabis sativa HOM05D000826 ORTHO05D006448 2.0e-41 172.6 126 65.1
QL05p057206 Quercus lobata HOM05D000826 ORTHO05D006448 2.6e-41 172.2 116 69.8
Sed0003877 Sechium edule HOM05D000826 ORTHO05D006448 2.6e-41 172.2 123 66.7
CDE12G0391 Ceratophyllum demersum HOM05D000826 ORTHO05D006448 3.4e-41 171.8 124 66.9
PSO675G8347 Papaver somniferum HOM05D000826 ORTHO05D006448 5.7e-41 171.0 120 68.3
EL10Ac8g19645 Beta vulgaris HOM05D000826 ORTHO05D006448 9.8e-41 170.2 125 67.2
Ciclev10015647m.g Citrus clementina HOM05D000826 ORTHO05D006448 2.2e-40 169.1 121 69.4
BcaB07g30849 Brassica carinata HOM05D000826 ORTHO05D006448 3.7e-40 168.3 121 66.1
HanXRQChr03g0090071 Helianthus annuus HOM05D000826 ORTHO05D006448 1.1e-39 166.8 121 62.8
PGR083G1867 Punica granatum HOM05D000826 ORTHO05D006448 1.1e-39 166.8 121 66.1
ECA234G1332 Erigeron canadensis HOM05D000826 ORTHO05D006448 1.8e-39 166.0 121 64.5
Sp2g11040 Schrenkiella parvula HOM05D000826 ORTHO05D006448 1.8e-39 166.0 121 64.5
Thhalv10000861m.g Eutrema salsugineum HOM05D000826 ORTHO05D006448 2.4e-39 165.6 121 64.5
Glyma.05G141900 Glycine max HOM05D000826 ORTHO05D006448 3.1e-39 165.2 121 63.6
Lalb_Chr18g0054071 Lupinus albus HOM05D000826 ORTHO05D006448 3.1e-39 165.2 121 65.3
CARHR175610 Cardamine hirsuta HOM05D000826 ORTHO05D006448 4.1e-39 164.9 121 64.5
THA.LOC104798396 Tarenaya hassleriana HOM05D000826 ORTHO05D006448 9.1e-39 163.7 122 63.1
AL8G12290 Arabidopsis lyrata HOM05D000826 ORTHO05D006448 1.2e-38 163.3 121 62.8
BraA06t27476Z Brassica rapa HOM05D000826 ORTHO05D006448 1.2e-38 163.3 121 64.5
ATR1098G046 Amborella trichopoda HOM05D000826 ORTHO05D006448 1.6e-38 162.9 121 65.3
arahy.Tifrunner.gnm1.ann1.ATM76I Arachis hypogaea HOM05D000826 ORTHO05D006448 1.6e-38 162.9 124 62.9
Sed0026801 Sechium edule HOM05D000826 ORTHO05D006448 1.6e-38 162.9 125 63.2
Aa31LG9G6730 Aethionema arabicum HOM05D000826 ORTHO05D006448 3.5e-38 161.8 121 63.6
CAN.G42.14 Capsicum annuum HOM05D000826 ORTHO05D006448 3.5e-38 161.8 125 65.6
Carub.0008s0174 Capsella rubella HOM05D000826 ORTHO05D006448 4.5e-38 161.4 121 62.0
AT5G46180 Arabidopsis thaliana HOM05D000826 ORTHO05D006448 5.9e-38 161.0 121 62.0
Cpa.g.sc17.2 Carica papaya HOM05D000826 ORTHO05D006448 5.9e-38 161.0 119 63.9
BolC7t43479H Brassica oleracea HOM05D000826 ORTHO05D006448 1.0e-37 160.2 121 62.0
arahy.Tifrunner.gnm1.ann1.F3DNME Arachis hypogaea HOM05D000826 ORTHO05D006448 1.3e-37 159.8 124 61.3
arahy.Tifrunner.gnm1.ann1.Z6DGE6 Arachis hypogaea HOM05D000826 ORTHO05D006448 1.3e-37 159.8 124 61.3
A06p46110 Brassica napus HOM05D000826 ORTHO05D006448 1.3e-37 159.8 121 62.8
C07p29380 Brassica napus HOM05D000826 ORTHO05D006448 1.7e-37 159.5 120 62.5
Lsat_1_v5_gn_4_29681 Lactuca sativa HOM05D000826 ORTHO05D006448 2.9e-37 158.7 119 62.2
Os03g0643300 Oryza sativa ssp. japonica HOM05D000826 ORTHO05D006448 3.8e-37 158.3 121 62.8
BcaC06g31494 Brassica carinata HOM05D000826 ORTHO05D006448 8.6e-37 157.1 114 66.7
Glyma.08G097800 Glycine max HOM05D000826 ORTHO05D006448 8.6e-37 157.1 121 60.3
Zm00001eb050460 Zea mays HOM05D000826 ORTHO05D006448 8.6e-37 157.1 123 63.4
HPP92_014005 Vanilla planifolia HOM05D000029 ORTHO05D006448 3.3e-36 155.2 123 60.2
VMungo0251G0373 Vigna mungo HOM05D000826 ORTHO05D006448 2.8e-35 152.1 122 57.4
Lj4g0015055 Lotus japonicus HOM05D000826 ORTHO05D006448 1.4e-34 149.8 122 59.0
Lj4g0011938 Lotus japonicus HOM05D000826 ORTHO05D006448 1.8e-34 149.4 122 59.0
CDE01G0123 Ceratophyllum demersum HOM05D000826 ORTHO05D006448 4.0e-34 148.3 111 64.0
Phvul.002G180400 Phaseolus vulgaris HOM05D000826 ORTHO05D006448 6.8e-34 147.5 122 57.4
BcaC04g21719 Brassica carinata HOM05D000826 ORTHO05D006448 3.4e-33 145.2 123 60.2
SEGI_29053 Sequoiadendron giganteum HOM05D000826 ORTHO05D006448 8.3e-32 140.6 121 56.2
TPR.G13303 Trifolium pratense HOM05D000826 ORTHO05D006448 2.4e-31 139.0 122 56.6
Ca_18168_v3 Cicer arietinum L. HOM05D000826 ORTHO05D006448 1.6e-30 136.3 122 54.1
Pp3c14_3770 Physcomitrium patens HOM05D000826 ORTHO05D006448 1.3e-29 133.3 121 52.1
C09p28310 Brassica napus HOM05D003959 ORTHO05D001488 5.0e-29 131.3 132 53.0
AagrBONN_evm.TU.Sc2ySwM_117.2020 Anthoceros agrestis HOM05D000826 ORTHO05D006448 9.5e-28 127.1 122 50.8
SMO119G0079 Selaginella moellendorffii HOM05D000826 ORTHO05D006448 4.7e-27 124.8 121 48.8
Haze_05627 Corylus avellana HOM05D000826 ORTHO05D006448 5.2e-26 121.3 72 75.0
CBR_g34489 Chara braunii HOM05D000826 ORTHO05D006448 2.0e-25 119.4 95 58.9
Mapoly0003s0017 Marchantia polymorpha HOM05D000826 ORTHO05D006448 1.3e-24 116.7 118 48.3
Glyma.17G184700 Glycine max HOM05D007034 ORTHO05D006448 4.6e-22 108.2 79 64.6
Glyma.19G189900 Glycine max HOM05D000826 ORTHO05D006448 3.9e-21 105.1 72 65.3
FAN16G2689 Fragaria x ananassa HOM05D000826 ORTHO05D006448 2.6e-17 92.4 54 77.8
CiPaw.01G112600 Carya illinoinensis HOM05D000826 ORTHO05D006448 4.4e-17 91.7 60 73.3
BolC9t55707H Brassica oleracea HOM05D000826 ORTHO05D006448 3.9e-13 78.6 53 67.9
Peaxi162Scf00317g00023 Petunia axillaris HOM05D000826 ORTHO05D006448 7.3e-12 74.3 50 76.0
RcHm_v2.0_Chr2g0108711 Rosa chinensis HOM05D000826 ORTHO05D006448 2.8e-11 72.4 48 68.8
PRCOL_00002709 Prasinoderma coloniale HOM05D000826 ORTHO05D006448 4.4e-09 65.1 113 35.4
Cre11.g474800 Chlamydomonas reinhardtii HOM05D000826 ORTHO05D006448 5.8e-09 64.7 63 46.0
Haze_26696 Corylus avellana HOM05D000826 ORTHO05D006448 1.1e-07 60.5 81 39.5
Cfa027217 Carpinus fangiana HOM05D000826 ORTHO05D006448 5.4e-07 58.2 113 31.0
A09p22160 Brassica napus HOM05D000826 ORTHO05D006448 2.1e-06 56.2 43 60.5
BraA09t37821Z Brassica rapa HOM05D000826 ORTHO05D006448 2.1e-06 56.2 43 60.5


User provided reference genes

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