Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.2e-197 693.0 356 100.0
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 2.4e-161 572.4 341 86.2
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 2.2e-154 549.3 358 81.8
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 1.9e-153 546.2 360 80.6
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 9.6e-150 533.9 339 81.1
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 3.1e-148 528.9 360 78.6
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 1.2e-147 526.9 316 84.5
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 2.6e-147 525.8 354 76.8
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 3.4e-147 525.4 338 79.0
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 5.8e-147 524.6 376 75.3
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 5.8e-147 524.6 323 81.4
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 7.6e-147 524.2 316 84.5
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 9.9e-147 523.9 315 84.1
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.7e-146 523.1 322 81.7
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 1.7e-146 523.1 354 76.3
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 2.9e-146 522.3 322 81.4
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 3.8e-146 521.9 347 78.1
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 8.4e-146 520.8 347 76.9
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 1.9e-145 519.6 313 85.0
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 2.4e-145 519.2 323 79.9
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 2.4e-145 519.2 323 79.6
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 3.2e-145 518.8 339 78.5
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 4.2e-145 518.5 323 79.6
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 5.4e-145 518.1 321 81.9
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 5.4e-145 518.1 332 79.5
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 5.4e-145 518.1 340 78.8
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.6e-144 516.5 348 78.7
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 2.7e-144 515.8 358 76.3
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 3.5e-144 515.4 306 84.6
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 4.6e-144 515.0 321 81.3
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 3.9e-143 511.9 348 75.3
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 9.6e-142 507.3 305 83.6
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 1.3e-141 506.9 317 81.4
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 1.6e-141 506.5 303 84.5
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 1.6e-141 506.5 329 77.8
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 2.1e-141 506.1 374 71.4
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 1.4e-140 503.4 338 76.0
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 1.8e-140 503.1 339 76.4
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 3.1e-140 502.3 317 79.8
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 4.0e-140 501.9 333 77.2
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 3.4e-139 498.8 340 75.9
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 9.9e-139 497.3 314 80.6
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 1.3e-138 496.9 326 78.2
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 2.9e-138 495.7 338 76.0
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 2.9e-138 495.7 347 74.6
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 1.1e-137 493.8 292 83.2
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 1.1e-137 493.8 319 79.6
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 1.9e-137 493.0 335 76.7
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 1.9e-137 493.0 317 79.5
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 3.2e-137 492.3 337 74.8
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 5.4e-137 491.5 291 83.5
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 7.1e-137 491.1 326 78.2
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 4.6e-136 488.4 341 73.3
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 7.9e-136 487.6 325 77.5
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 1.8e-135 486.5 319 78.7
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 3.0e-135 485.7 351 72.4
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 3.0e-135 485.7 351 72.4
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 5.1e-135 485.0 313 78.0
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 6.7e-135 484.6 325 77.5
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 6.7e-135 484.6 325 76.6
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 6.7e-135 484.6 306 78.8
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 1.1e-134 483.8 303 79.5
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 1.1e-134 483.8 319 78.1
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 2.1e-133 479.6 325 76.0
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 4.8e-133 478.4 316 77.5
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 8.1e-133 477.6 326 76.7
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 1.1e-132 477.2 312 78.2
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 5.3e-132 474.9 309 78.0
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 3.4e-131 472.2 309 76.7
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 1.0e-130 470.7 300 78.3
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 6.5e-130 468.0 307 78.2
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 8.4e-130 467.6 338 74.0
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 3.5e-128 462.2 311 75.6
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 6.0e-128 461.5 344 71.8
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.3e-127 460.3 311 76.5
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 1.8e-127 459.9 304 77.0
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 5.1e-127 458.4 304 75.3
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 7.4e-126 454.5 326 73.6
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 2.8e-125 452.6 348 71.3
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 4.8e-125 451.8 360 67.2
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 8.2e-125 451.1 304 74.0
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 1.2e-123 447.2 338 71.0
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 8.4e-122 441.0 267 83.9
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 5.5e-121 438.3 343 69.4
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 4.6e-120 435.3 277 79.4
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 1.1e-118 430.6 280 79.3
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 5.0e-114 415.2 277 76.9
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 2.5e-110 402.9 276 73.6
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 1.4e-105 387.1 322 62.4
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 1.6e-104 383.6 327 61.2
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 1.4e-103 380.6 270 74.8
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 1.5e-102 377.1 266 74.4
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 3.3e-102 375.9 256 76.6
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.3e-101 374.0 247 77.3
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 8.5e-98 361.3 228 78.9
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 1.9e-97 360.1 300 60.3
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 3.0e-95 352.8 231 75.3
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 5.2e-95 352.1 310 64.5
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 5.7e-94 348.6 322 55.6
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 6.3e-93 345.1 205 85.4
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 1.6e-91 340.5 278 65.5
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 2.2e-90 336.7 259 68.0
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 8.5e-90 334.7 203 81.8
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 1.0e-87 327.8 315 60.3
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 2.8e-85 319.7 196 83.7
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 1.0e-82 311.2 313 56.9
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 8.0e-80 301.6 200 76.0
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 4.0e-79 299.3 349 49.3
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 2.0e-70 270.4 238 58.4
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 6.2e-64 248.8 146 84.9
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 5.4e-60 235.7 189 68.8
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 2.0e-54 217.2 245 53.1
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 2.2e-53 213.8 132 80.3
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 8.3e-53 211.8 285 43.5
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 1.4e-52 211.1 119 85.7
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.2e-51 208.0 198 61.6
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 2.1e-48 197.2 116 86.2
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 2.1e-48 197.2 147 66.7
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 2.8e-48 196.8 138 71.7
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 7.6e-46 188.7 125 72.8
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.3e-45 188.0 162 68.5
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 6.4e-45 185.7 325 37.8
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 3.3e-41 173.3 119 73.1
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 3.3e-41 173.3 119 73.1
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 1.2e-40 171.4 119 72.3
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 5.4e-36 156.0 159 61.0
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 2.3e-34 150.6 91 82.4
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 5.1e-26 122.9 116 59.5
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.3e-24 118.2 96 64.6
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 1.4e-20 104.8 67 73.1
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 5.5e-20 102.8 55 87.3
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 5.6e-17 92.8 157 42.0
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 5.3e-15 86.3 112 42.9
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 1.2e-14 85.1 80 56.2
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 2.0e-14 84.3 57 71.9
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 2.6e-14 84.0 55 74.5
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 2.2e-13 80.9 70 65.7
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 2.9e-13 80.5 58 74.1
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 3.3e-09 67.0 45 68.9
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 8.2e-08 62.4 38 78.9
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 1.1e-07 62.0 135 33.3
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 2.4e-07 60.8 40 67.5
TPR.G30727 Trifolium pratense HOM05D005534 ORTHO05D006642 2.4e-07 60.8 45 66.7


User provided reference genes

Program Settings