Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044701 Camellia sinensis var. sinensis HOM05D007707 ORTHO05D009711 3.2e-36 154.5 73 100.0
vmacro22198 Vaccinium macrocarpon HOM05D007707 ORTHO05D009711 1.2e-14 82.8 52 71.2
Rhsim10G0207600 Rhododendron simsii HOM05D007707 ORTHO05D009711 5.9e-14 80.5 47 76.6
Dinv08562 Davidia involucrata HOM05D007707 ORTHO05D009711 2.3e-13 78.6 46 76.1
Haze_03717 Corylus avellana HOM05D007707 ORTHO05D009711 7.3e-12 73.6 40 77.5
Glyma.11G079800 Glycine max HOM05D007707 ORTHO05D009711 1.2e-11 72.8 41 75.6
Phvul.002G105900 Phaseolus vulgaris HOM05D007707 ORTHO05D009711 1.6e-11 72.4 41 73.2
Sed0012149 Sechium edule HOM05D007707 ORTHO05D009711 2.1e-11 72.0 55 60.0
Glyma.01G163700 Glycine max HOM05D007707 ORTHO05D009711 3.6e-11 71.2 41 70.7
Cfa007014 Carpinus fangiana HOM05D007707 ORTHO05D009711 6.1e-11 70.5 40 75.0
TWI73G0967 Tripterygium wilfordii HOM05D007707 ORTHO05D009711 6.1e-11 70.5 43 67.4
ECA246G5216 Erigeron canadensis HOM05D007707 ORTHO05D009711 8.0e-11 70.1 38 78.9
MBI08_g05062_MAGBIO Magnolia biondii HOM05D007707 ORTHO05D009711 1.4e-10 69.3 42 66.7
QL06p051322 Quercus lobata HOM05D007707 ORTHO05D009711 1.4e-10 69.3 39 76.9
Lj2g0020635 Lotus japonicus HOM05D007707 ORTHO05D009711 1.8e-10 68.9 41 65.9
FAN19G0536 Fragaria x ananassa HOM05D007707 ORTHO05D009711 2.3e-10 68.6 48 66.7
TPR.G10525 Trifolium pratense HOM05D007707 ORTHO05D009711 2.3e-10 68.6 49 61.2
RcHm_v2.0_Chr2g0098761 Rosa chinensis HOM05D007707 ORTHO05D009711 3.1e-10 68.2 43 67.4
Hma1.2p1_0869F.1_g230620 Hydrangea macrophylla HOM05D007707 ORTHO05D009711 4.0e-10 67.8 40 72.5
Medtr5g022760 Medicago truncatula HOM05D007707 ORTHO05D009711 4.0e-10 67.8 41 68.3
FAN23G0755 Fragaria x ananassa HOM05D007707 ORTHO05D009711 6.8e-10 67.0 48 66.7
Lsat_1_v5_gn_3_71080 Lactuca sativa HOM05D007707 ORTHO05D009711 6.8e-10 67.0 36 80.6
FAN28G2511 Fragaria x ananassa HOM05D007707 ORTHO05D009711 8.9e-10 66.6 36 77.8
Nitab4.5_0001685g0100 Nicotiana tabacum HOM05D007707 ORTHO05D009711 8.9e-10 66.6 45 66.7
CiPaw.07G061600 Carya illinoinensis HOM05D007707 ORTHO05D009711 1.2e-09 66.2 40 70.0
ClCG01G020510 Citrullus lanatus HOM05D007707 ORTHO05D009711 1.5e-09 65.9 37 75.7
Psat2g152640 Pisum sativum HOM05D007707 ORTHO05D009711 1.5e-09 65.9 38 71.1
Sc16g0001900 Simmondsia chinensis HOM05D007707 ORTHO05D009711 1.5e-09 65.9 44 63.6
Solyc03g033370.3 Solanum lycopersicum HOM05D007707 ORTHO05D009711 1.5e-09 65.9 38 76.3
Sopen03g006140 Solanum pennellii HOM05D007707 ORTHO05D009711 1.5e-09 65.9 38 76.3
Gohir.A11G173000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 2.6e-09 65.1 41 68.3
Gohir.D11G180000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 2.6e-09 65.1 41 68.3
Gorai.007G191900 Gossypium raimondii HOM05D007707 ORTHO05D009711 2.6e-09 65.1 41 68.3
MELO3C007931.2 Cucumis melo HOM05D007707 ORTHO05D009711 3.4e-09 64.7 40 70.0
Peaxi162Scf00635g00914 Petunia axillaris HOM05D007707 ORTHO05D009711 5.8e-09 63.9 37 75.7
Nitab4.5_0001561g0120 Nicotiana tabacum HOM05D007707 ORTHO05D009711 7.5e-09 63.5 37 73.0
SGA_v2.0_scaffold36G14291 Striga asiatica HOM05D007707 ORTHO05D009711 7.5e-09 63.5 40 65.0
THA.LOC104804277 Tarenaya hassleriana HOM05D007707 ORTHO05D009711 9.8e-09 63.2 38 65.8
CAN.G354.55 Capsicum annuum HOM05D007707 ORTHO05D009711 1.3e-08 62.8 46 60.9
Duzib147G0406 Durio zibethinus HOM05D007707 ORTHO05D009711 1.3e-08 62.8 38 68.4
CsaV3_6G047390 Cucumis sativus L. HOM05D007707 ORTHO05D009711 1.7e-08 62.4 40 67.5
DCAR_011610 Daucus carota HOM05D007707 ORTHO05D009711 1.7e-08 62.4 41 68.3
arahy.Tifrunner.gnm1.ann1.LEB2TA Arachis hypogaea HOM05D007707 ORTHO05D009711 2.2e-08 62.0 37 67.6
arahy.Tifrunner.gnm1.ann1.URRP40 Arachis hypogaea HOM05D007707 ORTHO05D009711 2.2e-08 62.0 37 67.6
Lalb_Chr09g0321541 Lupinus albus HOM05D007707 ORTHO05D009711 2.2e-08 62.0 41 70.7
A03p63940 Brassica napus HOM05D007707 ORTHO05D009711 2.9e-08 61.6 36 69.4
BraA03t15463Z Brassica rapa HOM05D007707 ORTHO05D009711 2.9e-08 61.6 36 69.4
CARHR244300 Cardamine hirsuta HOM05D007707 ORTHO05D009711 2.9e-08 61.6 41 61.0
Manes.01G149600 Manihot esculenta HOM05D007707 ORTHO05D009711 2.9e-08 61.6 41 65.9
Thecc.01G013500 Theobroma cacao HOM05D007707 ORTHO05D009711 2.9e-08 61.6 43 62.8
Ah.02g123290 Amaranthus hybridus HOM05D007707 ORTHO05D009711 3.7e-08 61.2 50 56.0
Prupe.7G172900 Prunus persica HOM05D007707 ORTHO05D009711 3.7e-08 61.2 51 52.9
ATR0180G024 Amborella trichopoda HOM05D007707 ORTHO05D009711 4.9e-08 60.8 35 71.4
C07p61410 Brassica napus HOM05D007707 ORTHO05D009711 6.4e-08 60.5 37 64.9
BolC7t46567H Brassica oleracea HOM05D007707 ORTHO05D009711 6.4e-08 60.5 37 64.9
CDE05G2854 Ceratophyllum demersum HOM05D007707 ORTHO05D009711 6.4e-08 60.5 45 57.8
Cc07_g11150 Coffea canephora HOM05D007707 ORTHO05D009711 6.4e-08 60.5 38 65.8
Oeu056393.1 Olea europaea HOM05D007707 ORTHO05D009711 6.4e-08 60.5 38 65.8
Pp3c14_18830 Physcomitrium patens HOM05D007707 ORTHO05D009711 6.4e-08 60.5 34 70.6
CANSAT01G1439 Cannabis sativa HOM05D007707 ORTHO05D009711 8.3e-08 60.1 34 70.6
Ciclev10026827m.g Citrus clementina HOM05D007707 ORTHO05D009711 8.3e-08 60.1 38 65.8
MD15G1241100 Malus domestica HOM05D007707 ORTHO05D009711 1.1e-07 59.7 40 65.0
Aa31LG6G12850 Aethionema arabicum HOM05D007707 ORTHO05D009711 1.4e-07 59.3 37 62.2
Os10g0438700 Oryza sativa ssp. japonica HOM05D007707 ORTHO05D009711 1.4e-07 59.3 45 60.0
EL10Ac6g15163 Beta vulgaris HOM05D007707 ORTHO05D009711 1.9e-07 58.9 43 58.1
BcaNung05054 Brassica carinata HOM05D007707 ORTHO05D009711 1.9e-07 58.9 37 64.9
Sp7g33690 Schrenkiella parvula HOM05D007707 ORTHO05D009711 1.9e-07 58.9 37 62.2
AL7G15140 Arabidopsis lyrata HOM05D007707 ORTHO05D009711 2.4e-07 58.5 36 63.9
AT4G35905 Arabidopsis thaliana HOM05D007707 ORTHO05D009711 2.4e-07 58.5 36 63.9
Migut.J01748 Erythranthe guttata HOM05D007707 ORTHO05D009711 2.4e-07 58.5 44 56.8
Thhalv10026722m.g Eutrema salsugineum HOM05D007707 ORTHO05D009711 3.2e-07 58.2 35 62.9
PGR102G1942 Punica granatum HOM05D007707 ORTHO05D009711 3.2e-07 58.2 38 63.2
SalBow2G3201 Salvia bowleyana HOM05D007707 ORTHO05D009711 3.2e-07 58.2 37 64.9
Nn6g31960 Nelumbo nucifera HOM05D007707 ORTHO05D009711 5.4e-07 57.4 35 65.7
COL.COLO4_22472 Corchorus olitorius HOM05D007707 ORTHO05D009711 7.0e-07 57.0 35 68.6
arahy.Tifrunner.gnm1.ann1.04LXIS Arachis hypogaea HOM05D000001 ORTHO05D009700 9.2e-07 56.6 36 63.9
AUR62018017 Chenopodium quinoa HOM05D007707 ORTHO05D009711 2.0e-06 55.5 43 55.8
Carub.0007s0432 Capsella rubella HOM05D007707 ORTHO05D009711 4.6e-06 54.3 36 61.1
Zm00001eb222710 Zea mays HOM05D007707 ORTHO05D009711 4.6e-06 54.3 38 55.3
Sabra15G0015600 Salix brachista HOM05D007707 ORTHO05D009711 6.0e-06 53.9 49 46.9


User provided reference genes

Program Settings