Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044695 Camellia sinensis var. sinensis HOM05D003490 ORTHO05D004835 9.0e-119 430.3 214 100.0
CSS0028180 Camellia sinensis var. sinensis HOM05D003490 ORTHO05D004835 2.2e-88 329.3 255 71.0
Migut.I01199 Erythranthe guttata HOM05D003490 ORTHO05D004835 1.0e-85 320.5 255 69.0
Hma1.2p1_1111F.1_g258430 Hydrangea macrophylla HOM05D003490 ORTHO05D004835 1.3e-85 320.1 255 68.6
Oeu049636.1 Olea europaea HOM05D003490 ORTHO05D004835 1.7e-85 319.7 255 69.0
Peaxi162Scf00177g00618 Petunia axillaris HOM05D003490 ORTHO05D004835 2.2e-85 319.3 255 68.2
Migut.D00889 Erythranthe guttata HOM05D003490 ORTHO05D004835 2.9e-85 318.9 255 68.6
Dinv20337 Davidia involucrata HOM05D003490 ORTHO05D004835 3.8e-85 318.5 255 68.6
Lj9A542G29 Lonicera japonica HOM05D003490 ORTHO05D004835 3.8e-85 318.5 255 67.8
Eucgr.F04030 Eucalyptus grandis HOM05D003490 ORTHO05D004835 5.0e-85 318.2 255 68.6
Lsat_1_v5_gn_4_89100 Lactuca sativa HOM05D003490 ORTHO05D004835 6.5e-85 317.8 255 68.2
Dinv37778 Davidia involucrata HOM05D003490 ORTHO05D004835 1.1e-84 317.0 255 68.6
Eucgr.J03179 Eucalyptus grandis HOM05D003490 ORTHO05D004835 1.4e-84 316.6 255 68.6
Hma1.2p1_0517F.1_g170820 Hydrangea macrophylla HOM05D003490 ORTHO05D004835 1.9e-84 316.2 255 68.2
Hma1.2p1_3612F.1_g337050 Hydrangea macrophylla HOM05D003490 ORTHO05D004835 1.9e-84 316.2 255 68.2
Nitab4.5_0002354g0050 Nicotiana tabacum HOM05D003490 ORTHO05D004835 1.9e-84 316.2 255 67.5
Nitab4.5_0003757g0110 Nicotiana tabacum HOM05D003490 ORTHO05D004835 1.9e-84 316.2 255 67.5
Nn8g40889 Nelumbo nucifera HOM05D003490 ORTHO05D004835 2.5e-84 315.8 255 67.8
SalBow6G0193 Salvia bowleyana HOM05D003490 ORTHO05D004835 2.5e-84 315.8 255 67.5
HanXRQChr10g0311201 Helianthus annuus HOM05D003490 ORTHO05D004835 3.2e-84 315.5 255 67.5
HanXRQChr12g0359711 Helianthus annuus HOM05D003490 ORTHO05D004835 3.2e-84 315.5 255 67.5
Oeu038373.4 Olea europaea HOM05D003490 ORTHO05D004835 3.2e-84 315.5 255 67.8
PGR102G0759 Punica granatum HOM05D003490 ORTHO05D004835 3.2e-84 315.5 255 68.2
Nitab4.5_0000357g0270 Nicotiana tabacum HOM05D003490 ORTHO05D004835 4.2e-84 315.1 253 67.6
THA.LOC104812329 Tarenaya hassleriana HOM05D003490 ORTHO05D004835 4.2e-84 315.1 255 68.2
Oeu048560.2 Olea europaea HOM05D003490 ORTHO05D004835 5.5e-84 314.7 255 67.8
MSTRG.10875 Avicennia marina HOM05D003490 ORTHO05D004835 7.2e-84 314.3 255 67.5
vmacro18745 Vaccinium macrocarpon HOM05D003490 ORTHO05D004835 7.2e-84 314.3 255 67.8
Atru.chr1.2661 Acer truncatum HOM05D003490 ORTHO05D004835 9.4e-84 313.9 255 67.8
Aqoxy4G02358 Aquilegia oxysepala HOM05D003490 ORTHO05D004835 9.4e-84 313.9 255 67.8
Aqoxy7G02759 Aquilegia oxysepala HOM05D003490 ORTHO05D004835 9.4e-84 313.9 255 67.8
Ciclev10030969m.g Citrus clementina HOM05D003490 ORTHO05D004835 1.2e-83 313.5 255 67.8
ECA234G0432 Erigeron canadensis HOM05D003490 ORTHO05D004835 1.2e-83 313.5 255 67.1
ECA234G3399 Erigeron canadensis HOM05D003490 ORTHO05D004835 1.2e-83 313.5 255 67.1
Lsat_1_v5_gn_5_137221 Lactuca sativa HOM05D003490 ORTHO05D004835 1.2e-83 313.5 255 67.1
MSTRG.4524 Avicennia marina HOM05D003490 ORTHO05D004835 1.6e-83 313.2 255 67.5
Cpa.g.sc155.13 Carica papaya HOM05D003490 ORTHO05D004835 1.6e-83 313.2 255 68.2
Manes.14G008200 Manihot esculenta HOM05D003490 ORTHO05D004835 1.6e-83 313.2 255 68.2
Nitab4.5_0007548g0050 Nicotiana tabacum HOM05D003490 ORTHO05D004835 1.6e-83 313.2 253 67.2
Rhsim08G0250100 Rhododendron simsii HOM05D003490 ORTHO05D004835 1.6e-83 313.2 255 67.5
TWI75G0499 Tripterygium wilfordii HOM05D003490 ORTHO05D004835 2.1e-83 312.8 255 67.8
Actinidia38808 Actinidia chinensis HOM05D003490 ORTHO05D004835 2.7e-83 312.4 255 67.5
FAN02G2379 Fragaria x ananassa HOM05D003490 ORTHO05D004835 2.7e-83 312.4 255 67.5
FAN09G3564 Fragaria x ananassa HOM05D003490 ORTHO05D004835 2.7e-83 312.4 255 67.5
Sc15g0001120 Simmondsia chinensis HOM05D003490 ORTHO05D004835 2.7e-83 312.4 255 67.5
GSVIVG01029546001 Vitis vinifera HOM05D003490 ORTHO05D004835 2.7e-83 312.4 255 67.1
PSO144G0044 Papaver somniferum HOM05D003490 ORTHO05D004835 3.6e-83 312.0 255 67.5
PSO170G3382 Papaver somniferum HOM05D003490 ORTHO05D004835 3.6e-83 312.0 255 67.5
Actinidia21886 Actinidia chinensis HOM05D003490 ORTHO05D004835 4.6e-83 311.6 255 67.5
Sed0012993 Sechium edule HOM05D003490 ORTHO05D004835 4.6e-83 311.6 255 67.8
Sopen06g022800 Solanum pennellii HOM05D003490 ORTHO05D004835 4.6e-83 311.6 255 66.7
SGA_v2.0_scaffold122G33265 Striga asiatica HOM05D003490 ORTHO05D004835 4.6e-83 311.6 255 66.7
TAR626G0762 Trochodendron aralioides HOM05D003490 ORTHO05D004835 4.6e-83 311.6 255 67.5
Cfa002154 Carpinus fangiana HOM05D003490 ORTHO05D004835 6.1e-83 311.2 255 67.5
Cc04_g00160 Coffea canephora HOM05D003490 ORTHO05D004835 6.1e-83 311.2 255 67.1
FvH4_6g37000 Fragaria vesca HOM05D003490 ORTHO05D004835 6.1e-83 311.2 255 67.1
FAN05G5356 Fragaria x ananassa HOM05D003490 ORTHO05D004835 6.1e-83 311.2 255 67.5
TWI18G1026 Tripterygium wilfordii HOM05D003490 ORTHO05D004835 6.1e-83 311.2 255 67.5
MSTRG.9558 Avicennia marina HOM05D003490 ORTHO05D004835 7.9e-83 310.8 255 66.7
Potri.008G005000 Populus trichocarpa HOM05D003490 ORTHO05D004835 7.9e-83 310.8 255 67.5
Prupe.3G022700 Prunus persica HOM05D003490 ORTHO05D004835 7.9e-83 310.8 255 66.7
Solyc12g055800.3 Solanum lycopersicum HOM05D003490 ORTHO05D004835 7.9e-83 310.8 255 66.3
Sopen12g024260 Solanum pennellii HOM05D003490 ORTHO05D004835 7.9e-83 310.8 255 66.3
PGSC0003DMG400026502 Solanum tuberosum HOM05D003490 ORTHO05D004835 7.9e-83 310.8 255 66.7
PGSC0003DMG400028839 Solanum tuberosum HOM05D003490 ORTHO05D004835 7.9e-83 310.8 255 66.3
MELO3C024284.2 Cucumis melo HOM05D003490 ORTHO05D004835 1.0e-82 310.5 255 67.5
Solyc06g063330.3 Solanum lycopersicum HOM05D003490 ORTHO05D004835 1.0e-82 310.5 255 66.3
THA.LOC104808104 Tarenaya hassleriana HOM05D003490 ORTHO05D004835 1.0e-82 310.5 255 67.1
VMungo0331G0590 Vigna mungo HOM05D003490 ORTHO05D004835 1.0e-82 310.5 255 66.7
Haze_16255 Corylus avellana HOM05D003490 ORTHO05D004835 1.4e-82 310.1 255 67.1
Lalb_Chr01g0011701 Lupinus albus HOM05D003490 ORTHO05D004835 1.4e-82 310.1 255 66.7
MD09G1165200 Malus domestica HOM05D003490 ORTHO05D004835 1.4e-82 310.1 255 67.1
MD17G1162700 Malus domestica HOM05D003490 ORTHO05D004835 1.4e-82 310.1 255 67.1
Phvul.010G163900 Phaseolus vulgaris HOM05D003490 ORTHO05D004835 1.4e-82 310.1 255 66.7
RcHm_v2.0_Chr2g0149541 Rosa chinensis HOM05D003490 ORTHO05D004835 1.4e-82 310.1 255 67.1
SGA_v2.0_scaffold71G23987 Striga asiatica HOM05D003490 ORTHO05D004835 1.4e-82 310.1 255 66.3
THA.LOC104813629 Tarenaya hassleriana HOM05D003490 ORTHO05D004835 1.4e-82 310.1 255 67.5
Lj3g0014966 Lotus japonicus HOM05D003490 ORTHO05D004835 1.8e-82 309.7 255 66.7
arahy.Tifrunner.gnm1.ann1.A6WMM1 Arachis hypogaea HOM05D003490 ORTHO05D004835 2.3e-82 309.3 255 66.7
arahy.Tifrunner.gnm1.ann1.EJI1J0 Arachis hypogaea HOM05D003490 ORTHO05D004835 2.3e-82 309.3 255 66.7
Manes.06G177500 Manihot esculenta HOM05D003490 ORTHO05D004835 2.3e-82 309.3 255 67.5
GSVIVG01035538001 Vitis vinifera HOM05D003490 ORTHO05D004835 3.9e-82 308.5 255 67.1
Glyma.07G002300 Glycine max HOM05D003490 ORTHO05D004835 5.1e-82 308.1 255 66.3
Glyma.08G224400 Glycine max HOM05D003490 ORTHO05D004835 5.1e-82 308.1 255 66.3
Ah.16g108080 Amaranthus hybridus HOM05D003490 ORTHO05D004835 6.7e-82 307.8 255 66.7
CsaV3_7G033710 Cucumis sativus L. HOM05D003490 ORTHO05D004835 6.7e-82 307.8 255 66.7
Sabra08G0002500 Salix brachista HOM05D003490 ORTHO05D004835 6.7e-82 307.8 255 67.1
EL10Ac2g03529 Beta vulgaris HOM05D003490 ORTHO05D004835 8.8e-82 307.4 255 67.1
Thhalv10018288m.g Eutrema salsugineum HOM05D003490 ORTHO05D004835 8.8e-82 307.4 255 66.7
Medtr4g005410 Medicago truncatula HOM05D003490 ORTHO05D004835 8.8e-82 307.4 255 66.7
CAN.G308.15 Capsicum annuum HOM05D003490 ORTHO05D004835 1.1e-81 307.0 255 65.5
TPR.G38757 Trifolium pratense HOM05D003490 ORTHO05D004835 1.5e-81 306.6 255 66.3
BcaB03g16050 Brassica carinata HOM05D003490 ORTHO05D004835 2.0e-81 306.2 255 66.7
BcaC03g15855 Brassica carinata HOM05D003490 ORTHO05D004835 2.0e-81 306.2 255 66.7
BcaC08g47444 Brassica carinata HOM05D003490 ORTHO05D004835 2.0e-81 306.2 255 66.7
A02p22410 Brassica napus HOM05D003490 ORTHO05D004835 2.0e-81 306.2 255 66.7
A07p44070 Brassica napus HOM05D003490 ORTHO05D004835 2.0e-81 306.2 255 66.7
C02p36070 Brassica napus HOM05D003490 ORTHO05D004835 2.0e-81 306.2 255 66.7
C06p52800 Brassica napus HOM05D003490 ORTHO05D004835 2.0e-81 306.2 255 66.7
BolC2t09622H Brassica oleracea HOM05D003490 ORTHO05D004835 2.0e-81 306.2 255 66.7
BolC6t40297H Brassica oleracea HOM05D003490 ORTHO05D004835 2.0e-81 306.2 255 66.7
BraA02t07245Z Brassica rapa HOM05D003490 ORTHO05D004835 2.0e-81 306.2 255 66.7
BraA07t31915Z Brassica rapa HOM05D003490 ORTHO05D004835 2.0e-81 306.2 255 66.7
Ca_20969_v3 Cicer arietinum L. HOM05D003490 ORTHO05D004835 2.0e-81 306.2 255 66.3
Psat7g265520 Pisum sativum HOM05D003490 ORTHO05D004835 2.0e-81 306.2 255 66.3
AL2G39320 Arabidopsis lyrata HOM05D003490 ORTHO05D004835 4.3e-81 305.1 255 66.3
CARHR072490 Cardamine hirsuta HOM05D003490 ORTHO05D004835 4.3e-81 305.1 255 66.3
BcaB05g25163 Brassica carinata HOM05D003490 ORTHO05D004835 5.7e-81 304.7 255 66.3
BcaC08g45403 Brassica carinata HOM05D003490 ORTHO05D004835 5.7e-81 304.7 255 66.3
A07p27430 Brassica napus HOM05D003490 ORTHO05D004835 5.7e-81 304.7 255 66.3
C06p30350 Brassica napus HOM05D003490 ORTHO05D004835 5.7e-81 304.7 255 66.3
BolC6t38198H Brassica oleracea HOM05D003490 ORTHO05D004835 5.7e-81 304.7 255 66.3
AUR62036002 Chenopodium quinoa HOM05D003490 ORTHO05D004835 5.7e-81 304.7 255 66.3
Gohir.A10G002200 Gossypium hirsutum HOM05D003490 ORTHO05D004835 5.7e-81 304.7 255 66.7
BraA07t30384Z Brassica rapa HOM05D003490 ORTHO05D004835 7.4e-81 304.3 255 66.3
CiPaw.01G091000 Carya illinoinensis HOM05D003490 ORTHO05D004835 7.4e-81 304.3 255 65.9
QL05p084430 Quercus lobata HOM05D003490 ORTHO05D004835 7.4e-81 304.3 254 65.7
QL05p084776 Quercus lobata HOM05D003490 ORTHO05D004835 7.4e-81 304.3 254 65.7
BcaB02g07185 Brassica carinata HOM05D003490 ORTHO05D004835 9.7e-81 303.9 255 66.3
Duzib160G0715 Durio zibethinus HOM05D003490 ORTHO05D004835 9.7e-81 303.9 255 66.7
Carub.0002s2573 Capsella rubella HOM05D003490 ORTHO05D004835 1.7e-80 303.1 255 65.5
Duzib192G0250 Durio zibethinus HOM05D003490 ORTHO05D004835 1.7e-80 303.1 255 66.3
Gohir.A05G114800 Gossypium hirsutum HOM05D003490 ORTHO05D004835 1.7e-80 303.1 255 66.3
Gohir.D10G002200 Gossypium hirsutum HOM05D003490 ORTHO05D004835 1.7e-80 303.1 255 66.3
Gorai.011G002600 Gossypium raimondii HOM05D003490 ORTHO05D004835 1.7e-80 303.1 255 66.3
Hund22442 Selenicereus undatus HOM05D003490 ORTHO05D004835 1.7e-80 303.1 255 65.1
Duzib235G1262 Durio zibethinus HOM05D003490 ORTHO05D004835 2.2e-80 302.8 255 66.3
Potri.010G253500 Populus trichocarpa HOM05D003490 ORTHO05D004835 2.2e-80 302.8 255 66.3
Sabra10G0197200 Salix brachista HOM05D003490 ORTHO05D004835 2.2e-80 302.8 255 66.3
AT1G78900 Arabidopsis thaliana HOM05D003490 ORTHO05D004835 2.8e-80 302.4 255 65.5
Sp5g33920 Schrenkiella parvula HOM05D003490 ORTHO05D004835 2.8e-80 302.4 255 65.5
Aa31LG4G2100 Aethionema arabicum HOM05D003490 ORTHO05D004835 3.7e-80 302.0 255 65.9
CANSAT01G2292 Cannabis sativa HOM05D003490 ORTHO05D004835 3.7e-80 302.0 255 65.1
AUR62041619 Chenopodium quinoa HOM05D003490 ORTHO05D004835 3.7e-80 302.0 255 65.9
Gohir.D05G115200 Gossypium hirsutum HOM05D003490 ORTHO05D004835 3.7e-80 302.0 255 65.9
Gorai.009G119300 Gossypium raimondii HOM05D003490 ORTHO05D004835 3.7e-80 302.0 255 65.9
Thecc.06G057300 Theobroma cacao HOM05D003490 ORTHO05D004835 4.8e-80 301.6 255 66.3
Zm00001eb233450 Zea mays HOM05D003490 ORTHO05D004835 8.2e-80 300.8 255 65.1
TAR383G0695 Trochodendron aralioides HOM05D003490 ORTHO05D004835 1.4e-79 300.1 255 64.7
COL.COLO4_31156 Corchorus olitorius HOM05D003490 ORTHO05D004835 3.1e-79 298.9 252 65.5
Zm00001eb206930 Zea mays HOM05D003490 ORTHO05D004835 4.1e-79 298.5 255 64.7
Hund19288 Selenicereus undatus HOM05D003490 ORTHO05D004835 9.1e-79 297.4 255 64.3
Os06g0662000 Oryza sativa ssp. japonica HOM05D003490 ORTHO05D004835 3.4e-78 295.4 255 63.5
HPP92_010142 Vanilla planifolia HOM05D003490 ORTHO05D004835 2.2e-77 292.7 255 63.5
unitig_748.g7473 Utricularia gibba HOM05D003490 ORTHO05D004835 2.9e-77 292.4 289 58.8
MBI16_g34879_MAGBIO Magnolia biondii HOM05D003490 ORTHO05D004835 2.5e-76 289.3 275 60.0
ATR0626G015 Amborella trichopoda HOM05D003490 ORTHO05D004835 3.2e-76 288.9 255 62.7
ClCG09G001630 Citrullus lanatus HOM05D003490 ORTHO05D004835 6.1e-75 284.6 255 64.3
Os02g0175400 Oryza sativa ssp. japonica HOM05D003490 ORTHO05D004835 5.1e-74 281.6 255 61.2
SEGI_20998 Sequoiadendron giganteum HOM05D003490 ORTHO05D004835 4.4e-73 278.5 251 61.4
Pp3c20_16000 Physcomitrium patens HOM05D003490 ORTHO05D004835 8.2e-72 274.2 255 59.6
Pp3c8_10370 Physcomitrium patens HOM05D003490 ORTHO05D004835 1.1e-71 273.9 255 59.2
Pp3c23_8330 Physcomitrium patens HOM05D003490 ORTHO05D004835 2.4e-71 272.7 255 59.2
FAN14G5743 Fragaria x ananassa HOM05D003490 ORTHO05D004835 2.9e-69 265.8 247 62.8
Mapoly0011s0112 Marchantia polymorpha HOM05D003490 ORTHO05D004835 7.2e-68 261.2 255 56.9
CBR_g8589 Chara braunii HOM05D003490 ORTHO05D004835 2.7e-67 259.2 255 57.3
SMO351G0215 Selaginella moellendorffii HOM05D003490 ORTHO05D004835 4.0e-66 255.4 256 55.5
CDE06G2075 Ceratophyllum demersum HOM05D003490 ORTHO05D004835 5.2e-66 255.0 241 59.8
DCAR_007671 Daucus carota HOM05D003490 ORTHO05D004835 5.3e-63 245.0 226 60.6
PRCOL_00000884 Prasinoderma coloniale HOM05D003490 ORTHO05D004835 3.6e-59 232.3 252 52.0
AagrBONN_evm.TU.Sc2ySwM_368.2488 Anthoceros agrestis HOM05D003490 ORTHO05D004835 4.7e-59 231.9 252 51.2
MCO15G659 Micromonas commoda HOM05D003490 ORTHO05D004835 1.5e-57 226.9 255 49.8
Cre10.g461050 Chlamydomonas reinhardtii HOM05D003490 ORTHO05D004835 6.3e-56 221.5 257 50.6
Haze_26600 Corylus avellana HOM05D003490 ORTHO05D004835 3.3e-44 182.6 252 42.9
CAN.G390.39 Capsicum annuum HOM05D003490 ORTHO05D004835 1.2e-38 164.1 94 80.9
CDE02G3722 Ceratophyllum demersum HOM05D003490 ORTHO05D004835 3.5e-38 162.5 130 69.2
CAN.G390.38 Capsicum annuum HOM05D003490 ORTHO05D004835 5.9e-38 161.8 139 64.7
Actinidia35911 Actinidia chinensis HOM05D003490 ORTHO05D000991 9.5e-36 154.5 129 66.7
Cfa023814 Carpinus fangiana HOM05D003490 ORTHO05D002242 1.9e-31 140.2 236 36.0
vmacro06800 Vaccinium macrocarpon HOM05D007552 ORTHO05D009397 3.4e-17 92.8 69 72.5
CDE02G1613 Ceratophyllum demersum HOM05D003490 ORTHO05D004835 1.3e-16 90.9 73 61.6
CDE05G0596 Ceratophyllum demersum HOM05D003490 ORTHO05D130028 7.1e-07 58.5 53 47.2
AT1G16820 Arabidopsis thaliana HOM05D003490 ORTHO05D026861 4.6e-06 55.8 40 62.5
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 7.8e-06 55.1 42 69.0


User provided reference genes

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