Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 2178.3 1128 100.0
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1782.3 1128 81.9
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1748.8 1219 77.4
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1746.1 1154 79.3
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1741.9 1124 79.4
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1731.1 1259 74.4
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1676.0 1148 75.8
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1670.6 1149 75.6
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1666.4 1146 75.3
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1657.1 1160 75.2
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1626.7 1149 74.8
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1622.8 1146 74.3
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1617.1 1147 73.4
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1615.1 1125 74.5
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1614.0 1140 73.3
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1612.4 1125 74.0
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1609.0 1127 74.8
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1599.7 1127 74.4
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1591.2 1009 79.0
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1590.5 1156 72.6
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1580.1 1116 74.0
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1577.0 1131 72.4
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1574.3 1136 73.0
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1572.8 1090 75.0
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1557.7 1127 72.2
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1553.1 1179 69.5
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1549.3 1127 71.4
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1548.9 1134 70.2
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1530.8 1110 71.0
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1526.1 1144 71.0
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1525.8 1130 71.2
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1525.0 1180 68.3
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1523.1 1130 70.2
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1513.8 1136 68.6
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1511.1 1136 68.9
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1510.4 1011 75.6
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1510.0 1143 68.9
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1506.9 1131 70.5
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1506.1 1137 70.4
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1503.8 1109 70.9
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1501.1 1124 69.3
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1488.4 1115 69.0
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1485.7 1120 69.0
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1485.3 1126 69.5
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1484.5 1134 67.1
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1483.4 1109 69.1
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1478.8 1110 67.9
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1478.0 1127 69.4
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1475.3 1127 69.3
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1474.9 1127 68.9
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1474.9 1111 69.2
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1474.9 1111 67.6
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1467.2 1125 67.1
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1462.2 1154 65.0
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1452.6 1119 67.3
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1449.9 1145 66.3
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1445.6 1113 67.9
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1441.4 1145 66.6
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1441.0 1120 68.4
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1441.0 1147 66.5
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1440.2 1142 65.4
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1439.5 1137 68.1
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1438.3 1128 66.7
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1437.2 1131 66.9
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1428.3 1141 66.0
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1427.5 1136 66.4
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1427.5 1113 66.7
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1422.5 1144 64.6
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1420.2 1138 68.3
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1413.7 1127 68.1
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1409.4 1137 64.5
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1406.0 1119 66.2
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1401.7 1038 67.0
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1399.8 1123 64.6
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1393.6 1098 64.7
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1392.9 1120 65.0
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1388.2 1038 66.5
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1385.9 1116 65.5
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1383.2 1124 63.5
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1382.5 1089 64.6
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1382.5 1377 55.2
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1370.5 1103 64.3
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1367.4 1059 64.9
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1364.4 1099 63.3
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1354.3 1079 65.2
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1351.3 1120 64.0
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1349.0 1079 63.3
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1343.9 1081 63.2
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1343.2 1075 63.3
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1341.3 1066 63.3
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1335.9 1091 62.6
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1312.7 1057 63.0
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1312.4 1078 63.6
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1311.6 918 73.6
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1286.2 1090 61.6
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1284.6 1094 60.8
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1262.3 1078 59.6
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1256.9 1070 60.7
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1248.0 1057 62.3
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1234.9 883 73.5
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1231.5 1130 56.5
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1224.2 905 68.7
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 0.0e+00 1185.6 1109 58.6
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1182.2 1093 58.7
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1136.7 822 71.5
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1124.0 1129 55.6
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1117.8 680 82.5
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1098.2 955 59.7
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 3.1e-311 1072.0 1027 54.5
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 1.7e-285 986.5 1001 50.8
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 1.1e-281 973.8 783 64.8
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 1.7e-277 959.9 663 75.3
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 1.0e-274 950.7 964 50.2
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.2e-260 902.5 581 79.2
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 8.0e-259 897.9 1029 47.8
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.0e-245 852.8 546 79.7
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.0e-245 852.8 546 79.7
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 3.2e-215 753.1 1045 41.5
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 6.7e-165 585.9 388 78.4
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 1.4e-101 375.6 400 53.2
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 5.5e-66 257.3 201 64.7
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.1e-65 255.4 205 62.9
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 2.2e-59 235.3 1054 23.3
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 1.2e-57 229.6 143 77.6
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 3.6e-57 228.0 222 55.4
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 1.0e-51 209.9 165 63.6
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 8.8e-48 196.8 171 62.0
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 1.3e-43 183.0 185 56.2
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.8e-40 172.6 174 56.3
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 7.5e-39 167.2 620 24.4
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 1.8e-37 162.5 726 24.8
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 1.5e-31 142.9 150 54.0
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.0e-28 132.5 120 60.0
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 1.1e-26 126.7 96 64.6
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.4e-21 109.8 80 77.5
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 4.1e-21 108.2 107 53.3
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 8.0e-17 94.0 281 27.8
Nitab4.5_0000282g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 7.5e-15 87.4 90 57.8
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 5.4e-13 81.3 74 59.5
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 3.5e-12 78.6 300 28.0
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 1.0e-11 77.0 68 57.4
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 3.9e-11 75.1 50 60.0
COL.COLO4_03377 Corchorus olitorius HOM05D004682 ORTHO05D006197 5.6e-10 71.2 88 54.5
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 1.6e-09 69.7 82 51.2
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 2.3e-08 65.9 121 37.2
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 8.9e-08 63.9 39 71.8
PGSC0003DMG400017058 Solanum tuberosum HOM05D004682 ORTHO05D026186 8.9e-08 63.9 87 44.8
Solyc03g150123.1 Solanum lycopersicum HOM05D004682 ORTHO05D026176 7.5e-07 60.8 58 53.4
COL.COLO4_15782 Corchorus olitorius HOM05D004682 ORTHO05D006197 9.8e-07 60.5 114 36.8
Solyc05g023600.3 Solanum lycopersicum HOM05D004682 ORTHO05D006197 8.3e-06 57.4 50 62.0


User provided reference genes

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