Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.0e-81 305.8 165 100.0
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.7e-75 284.6 165 94.5
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.2e-70 270.0 151 98.7
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 4.6e-62 241.5 161 80.7
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.5e-60 236.5 163 79.8
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.9e-60 236.1 163 79.8
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.3e-60 235.0 160 80.0
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.3e-60 235.0 160 80.0
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 4.3e-60 235.0 160 81.2
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 4.3e-60 235.0 160 81.2
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 1.4e-58 229.9 164 78.7
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 1.4e-58 229.9 164 78.7
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 2.3e-58 229.2 160 79.4
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 4.0e-58 228.4 158 75.9
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 3.4e-57 225.3 161 75.2
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 5.8e-57 224.6 161 73.3
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 7.5e-57 224.2 160 73.8
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.2e-56 222.6 161 75.2
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 2.9e-56 222.2 159 74.2
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 3.7e-56 221.9 161 74.5
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 3.2e-55 218.8 160 72.5
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 3.2e-55 218.8 161 70.8
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 7.0e-55 217.6 161 73.9
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 7.0e-55 217.6 160 72.5
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 1.6e-54 216.5 160 76.2
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 2.7e-54 215.7 160 71.2
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 7.8e-54 214.2 160 70.6
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 7.8e-54 214.2 160 70.6
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 2.3e-53 212.6 161 71.4
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 5.0e-53 211.5 160 71.2
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 1.1e-52 210.3 161 72.0
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.5e-52 209.9 195 61.5
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 3.3e-52 208.8 161 67.7
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.3e-52 207.6 165 76.4
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 7.3e-52 207.6 160 69.4
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 1.2e-51 206.8 161 69.6
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 1.6e-51 206.5 161 72.0
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 2.1e-51 206.1 160 69.4
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 3.6e-51 205.3 161 68.9
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 6.2e-51 204.5 160 71.2
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 1.4e-50 203.4 162 68.5
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 1.4e-50 203.4 159 66.7
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 1.8e-50 203.0 161 72.7
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 1.8e-50 203.0 160 69.4
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 2.3e-50 202.6 161 67.7
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 3.1e-50 202.2 161 67.1
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 3.1e-50 202.2 161 72.0
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 3.1e-50 202.2 161 66.5
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 4.0e-50 201.8 160 68.8
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 4.0e-50 201.8 160 70.0
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 5.2e-50 201.4 160 69.4
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 8.9e-50 200.7 160 70.0
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 8.9e-50 200.7 160 68.8
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 8.9e-50 200.7 158 66.5
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 1.2e-49 200.3 160 68.1
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 1.2e-49 200.3 159 70.4
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 1.2e-49 200.3 161 65.8
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 1.5e-49 199.9 160 68.8
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.5e-49 199.9 157 66.9
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 1.5e-49 199.9 205 61.0
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 2.0e-49 199.5 160 67.5
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 2.0e-49 199.5 160 67.5
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 2.0e-49 199.5 157 67.5
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 2.0e-49 199.5 161 65.2
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 3.4e-49 198.7 160 63.8
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 4.4e-49 198.4 160 68.8
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 4.4e-49 198.4 160 68.8
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 7.5e-49 197.6 161 67.7
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 7.5e-49 197.6 161 65.8
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 7.5e-49 197.6 160 66.9
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 9.8e-49 197.2 160 70.0
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 9.8e-49 197.2 161 67.1
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 9.8e-49 197.2 160 66.2
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 1.3e-48 196.8 160 66.9
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 1.3e-48 196.8 160 68.1
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 2.2e-48 196.1 160 68.8
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 3.7e-48 195.3 160 67.5
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 3.7e-48 195.3 161 61.5
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 3.7e-48 195.3 161 65.2
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 8.3e-48 194.1 160 66.9
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.1e-47 193.7 162 63.6
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 1.9e-47 193.0 147 69.4
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 7.1e-47 191.0 161 67.1
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 3.5e-46 188.7 163 65.0
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 3.5e-46 188.7 159 65.4
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 4.6e-46 188.3 161 66.5
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.6e-46 188.3 161 66.5
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 4.6e-46 188.3 159 63.5
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 7.8e-46 187.6 160 66.2
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 7.8e-46 187.6 160 60.0
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 1.0e-45 187.2 160 65.6
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 1.0e-45 187.2 160 66.2
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 1.0e-45 187.2 161 66.5
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 2.3e-45 186.0 161 63.4
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 5.1e-45 184.9 160 63.8
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 6.6e-45 184.5 158 63.3
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.5e-44 183.3 161 65.2
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 1.9e-44 183.0 160 66.2
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 1.9e-44 183.0 161 64.6
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 3.3e-44 182.2 161 60.9
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 5.6e-44 181.4 160 63.1
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 5.6e-44 181.4 161 62.7
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 7.3e-44 181.0 158 61.4
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 7.3e-44 181.0 161 62.7
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 2.1e-43 179.5 158 62.7
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 3.6e-43 178.7 161 62.7
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 6.2e-43 177.9 152 63.2
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 8.1e-43 177.6 161 60.9
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 1.1e-42 177.2 158 62.0
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 1.4e-42 176.8 137 70.8
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 2.3e-42 176.0 159 61.0
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 8.9e-42 174.1 140 67.1
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 1.5e-41 173.3 158 60.1
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 2.0e-41 172.9 161 59.6
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 2.0e-41 172.9 156 59.6
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 2.6e-41 172.6 161 59.0
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 2.6e-41 172.6 156 60.3
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 3.4e-41 172.2 160 63.1
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 6.4e-40 167.9 161 60.2
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 6.4e-40 167.9 158 60.1
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.4e-39 166.0 235 48.5
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 3.2e-39 165.6 157 59.9
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 5.4e-39 164.9 154 60.4
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 9.2e-39 164.1 158 59.5
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 4.6e-38 161.8 161 58.4
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 2.0e-33 146.4 103 69.9
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 5.8e-33 144.8 122 64.8
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 7.8e-30 134.4 158 55.7
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.3e-29 133.7 142 55.6
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 5.6e-28 128.3 170 46.5
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 2.8e-27 125.9 159 47.2
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 1.4e-23 113.6 96 66.7
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 2.1e-22 109.8 79 73.4
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 7.9e-22 107.8 125 56.0
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 7.4e-20 101.3 113 49.6
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 1.6e-19 100.1 153 40.5
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.8e-18 96.7 149 40.3
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 8.4e-16 87.8 162 40.1
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 5.6e-12 75.1 58 72.4
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 2.9e-08 62.8 38 78.9


User provided reference genes

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