Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 1.0e-122 443.4 212 100.0
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 1.2e-110 403.3 213 89.7
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 6.4e-109 397.5 213 89.7
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 3.0e-106 388.7 214 85.0
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 8.6e-106 387.1 212 85.8
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.5e-105 386.3 198 90.9
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.9e-105 386.0 213 86.4
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 1.9e-105 386.0 212 84.9
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 3.3e-105 385.2 213 85.4
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 5.6e-105 384.4 213 85.9
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 9.5e-105 383.6 213 85.9
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.2e-104 383.3 213 85.9
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 1.6e-104 382.9 210 85.7
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.6e-104 382.9 213 84.5
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 2.1e-104 382.5 210 85.7
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 4.7e-104 381.3 213 85.4
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 1.4e-103 379.8 204 87.3
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 2.3e-103 379.0 211 83.4
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 3.1e-103 378.6 213 83.6
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 4.0e-103 378.3 209 86.1
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 4.0e-103 378.3 213 84.0
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 2.6e-102 375.6 213 83.1
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 7.6e-102 374.0 213 81.2
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 7.6e-102 374.0 208 85.1
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 1.7e-101 372.9 207 83.1
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 2.2e-101 372.5 209 83.3
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 4.9e-101 371.3 213 80.8
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 4.9e-101 371.3 213 84.0
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 6.4e-101 370.9 204 83.3
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 8.3e-101 370.5 213 80.3
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 1.1e-100 370.2 211 82.9
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 1.1e-100 370.2 213 82.2
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 1.4e-100 369.8 213 82.6
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 2.4e-100 369.0 209 83.3
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 2.4e-100 369.0 213 84.0
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 4.1e-100 368.2 212 80.7
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 5.4e-100 367.9 210 80.0
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 5.4e-100 367.9 212 81.1
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 5.4e-100 367.9 209 82.3
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 5.4e-100 367.9 213 81.7
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 5.4e-100 367.9 213 80.3
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.2e-99 366.7 213 81.2
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.2e-99 366.7 212 81.1
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.6e-99 366.3 212 80.7
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 3.5e-99 365.2 198 84.3
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 4.6e-99 364.8 193 88.1
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 4.6e-99 364.8 210 79.0
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 4.6e-99 364.8 211 80.6
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 4.6e-99 364.8 209 82.3
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 6.0e-99 364.4 213 80.8
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 6.0e-99 364.4 209 82.8
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 7.8e-99 364.0 212 80.2
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 7.8e-99 364.0 213 82.2
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 1.0e-98 363.6 209 81.3
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 1.0e-98 363.6 209 81.3
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 1.0e-98 363.6 198 80.8
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 1.3e-98 363.2 208 82.2
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 2.3e-98 362.5 213 79.3
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 3.0e-98 362.1 213 81.7
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 3.0e-98 362.1 198 84.3
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 5.1e-98 361.3 213 81.7
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 5.1e-98 361.3 208 82.2
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 6.6e-98 360.9 213 80.3
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.5e-97 359.8 213 79.3
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 3.3e-97 358.6 204 81.4
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 5.6e-97 357.8 234 74.8
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 5.6e-97 357.8 208 79.8
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 7.3e-97 357.5 204 81.4
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 9.6e-97 357.1 209 80.4
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 9.6e-97 357.1 213 80.8
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 2.8e-96 355.5 204 79.9
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 3.6e-96 355.1 200 80.0
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 6.2e-96 354.4 198 83.3
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 8.1e-96 354.0 213 78.9
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 1.4e-95 353.2 211 79.1
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.8e-95 352.8 213 78.4
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 6.8e-95 350.9 198 79.3
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 6.8e-95 350.9 208 79.3
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 8.9e-95 350.5 204 79.9
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 1.5e-94 349.7 209 78.5
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 2.6e-94 349.0 209 77.0
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 3.4e-94 348.6 198 79.8
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 5.8e-94 347.8 213 75.1
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 7.6e-94 347.4 233 71.7
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 9.9e-94 347.1 198 78.8
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 9.9e-94 347.1 213 79.3
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 1.7e-93 346.3 198 78.8
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 1.7e-93 346.3 198 78.8
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 2.9e-93 345.5 195 79.0
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 3.8e-93 345.1 210 74.8
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 3.8e-93 345.1 207 77.3
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 8.4e-93 344.0 253 70.4
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 8.4e-93 344.0 208 74.0
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 1.1e-92 343.6 195 78.5
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 1.4e-92 343.2 212 75.5
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 1.9e-92 342.8 195 78.5
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 1.9e-92 342.8 212 74.1
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 2.4e-92 342.4 195 78.5
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 3.2e-92 342.0 210 74.3
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 4.2e-92 341.7 210 74.3
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 4.2e-92 341.7 198 77.3
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 5.4e-92 341.3 210 74.3
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 5.4e-92 341.3 212 74.5
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 4.6e-91 338.2 194 78.4
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 4.6e-91 338.2 210 73.3
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 7.8e-91 337.4 211 74.4
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 1.5e-89 333.2 165 93.3
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 3.6e-88 328.6 200 75.0
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 8.1e-88 327.4 213 74.2
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 8.1e-88 327.4 198 75.3
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 3.1e-87 325.5 195 74.4
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 3.1e-87 325.5 295 58.0
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 5.3e-87 324.7 199 74.9
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 9.0e-87 323.9 208 71.2
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 9.9e-86 320.5 198 73.2
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 3.8e-85 318.5 212 72.6
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 6.4e-85 317.8 199 73.4
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 4.2e-84 315.1 178 84.8
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 1.4e-79 300.1 163 85.9
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 1.1e-71 273.9 429 42.0
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 5.3e-71 271.6 145 85.5
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 3.4e-70 268.9 145 84.1
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 2.5e-68 262.7 204 64.2
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 9.3e-68 260.8 172 72.7
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 1.0e-66 257.3 145 78.6
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 3.1e-55 219.2 113 88.5
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 1.7e-53 213.4 134 71.6
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 1.8e-47 193.4 125 73.6
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 2.0e-46 189.9 189 47.6
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 5.0e-45 185.3 185 50.8
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 9.4e-44 181.0 109 80.7
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 4.8e-40 168.7 88 87.5
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 2.9e-37 159.5 195 41.0
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 2.7e-35 152.9 97 77.3
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 6.1e-35 151.8 74 93.2
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 8.0e-35 151.4 143 53.1
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 4.4e-33 145.6 105 70.5
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 8.2e-32 141.4 86 74.4
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 9.4e-20 101.3 69 69.6
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 1.4e-18 97.4 59 74.6
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 5.7e-17 92.0 70 60.0
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 8.3e-16 88.2 60 75.0
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 1.2e-14 84.3 66 63.6
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 6.1e-11 72.0 35 91.4
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 1.8e-10 70.5 35 85.7
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 6.8e-10 68.6 40 82.5
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 2.2e-08 63.5 32 87.5
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 7.0e-07 58.5 53 60.4


User provided reference genes

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