Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 4.2e-89 331.6 209 100.0
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.9e-83 311.2 201 92.5
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 4.6e-51 205.3 208 57.2
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 4.4e-46 188.7 212 59.9
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 4.4e-46 188.7 210 61.0
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.1e-44 184.1 205 54.1
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 3.5e-43 179.1 205 60.5
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 2.3e-42 176.4 207 50.2
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 5.1e-42 175.3 219 65.3
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 8.7e-42 174.5 214 49.5
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 2.8e-40 169.5 207 48.3
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 4.8e-40 168.7 217 48.8
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 6.9e-39 164.9 210 49.5
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 6.9e-39 164.9 214 50.0
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 2.0e-38 163.3 211 48.3
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 2.0e-38 163.3 211 48.3
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 2.0e-38 163.3 219 46.1
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 2.0e-38 163.3 214 48.6
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 2.6e-38 162.9 225 48.9
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 2.6e-38 162.9 218 53.7
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 3.4e-38 162.5 214 59.8
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.4e-38 162.5 207 57.5
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 3.4e-38 162.5 217 47.9
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 9.9e-38 161.0 206 47.1
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 1.3e-37 160.6 216 51.9
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 2.2e-37 159.8 207 50.2
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 2.9e-37 159.5 214 46.7
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 2.9e-37 159.5 231 48.1
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 3.8e-37 159.1 210 58.6
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 4.9e-37 158.7 219 53.9
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 8.4e-37 157.9 216 57.4
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 1.4e-36 157.1 206 47.1
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 1.4e-36 157.1 208 50.5
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 1.9e-36 156.8 211 46.9
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 1.9e-36 156.8 220 43.2
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 1.9e-36 156.8 220 43.2
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 1.9e-36 156.8 234 46.2
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 2.4e-36 156.4 231 46.3
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 4.2e-36 155.6 234 46.2
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.4e-36 155.2 205 55.6
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 5.4e-36 155.2 205 55.6
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 9.3e-36 154.5 200 55.0
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 9.3e-36 154.5 236 46.6
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 1.6e-35 153.7 236 45.3
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.5e-35 152.5 228 46.9
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 6.0e-35 151.8 212 51.9
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 7.8e-35 151.4 209 43.5
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 7.8e-35 151.4 209 45.5
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 7.8e-35 151.4 209 49.3
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 1.3e-34 150.6 198 47.5
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 1.3e-34 150.6 221 45.2
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 1.3e-34 150.6 218 56.0
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.3e-34 150.6 237 45.1
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 3.9e-34 149.1 200 48.0
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 6.6e-34 148.3 200 48.5
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 6.6e-34 148.3 226 46.0
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 8.7e-34 147.9 216 41.7
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.1e-33 147.5 203 50.7
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 4.3e-33 145.6 216 56.0
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.6e-33 145.2 203 43.3
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 7.3e-33 144.8 210 57.6
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 7.3e-33 144.8 250 49.6
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.1e-32 143.3 209 45.0
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.8e-32 142.9 209 45.0
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 6.2e-32 141.7 226 43.4
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 8.1e-32 141.4 139 59.7
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 1.1e-31 141.0 144 56.9
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 4.0e-31 139.0 209 56.9
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 5.3e-31 138.7 235 43.4
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 6.9e-31 138.3 207 48.8
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 6.9e-31 138.3 210 48.1
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 2.0e-30 136.7 220 40.5
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 5.8e-30 135.2 230 49.6
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 7.6e-30 134.8 216 43.5
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 2.9e-29 132.9 215 44.7
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 4.2e-28 129.0 198 43.9
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 4.2e-28 129.0 204 47.1
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.6e-27 127.1 224 37.1
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 2.1e-27 126.7 215 36.3
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 2.7e-27 126.3 224 36.6
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 3.5e-27 125.9 234 37.6
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 6.0e-27 125.2 211 44.5
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 7.9e-27 124.8 215 38.1
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.0e-26 124.4 222 36.9
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.0e-26 124.4 224 36.2
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 1.8e-26 123.6 230 46.5
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.3e-26 123.2 224 37.9
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.1e-25 120.9 221 35.7
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 1.9e-25 120.2 221 38.0
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 2.5e-25 119.8 217 42.9
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 5.6e-25 118.6 236 39.0
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 9.6e-25 117.9 212 36.8
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 1.3e-24 117.5 230 37.8
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 4.8e-24 115.5 216 35.2
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 6.2e-24 115.2 214 35.0
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 1.8e-23 113.6 122 62.3
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 6.9e-23 111.7 198 36.9
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.2e-22 110.9 223 35.4
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 1.5e-22 110.5 201 36.8
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 3.4e-22 109.4 120 49.2
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 5.8e-22 108.6 207 34.8
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 6.5e-21 105.1 213 34.7
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 4.2e-20 102.4 214 37.9
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.2e-19 100.9 214 35.5
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 1.6e-19 100.5 202 40.6
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 1.6e-19 100.5 202 40.6
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 2.1e-19 100.1 230 32.2
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 3.5e-19 99.4 217 39.6
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 4.6e-19 99.0 206 33.5
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 6.0e-19 98.6 206 35.4
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 6.0e-19 98.6 200 34.5
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 6.0e-19 98.6 206 35.4
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 6.0e-19 98.6 206 35.4
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 6.0e-19 98.6 200 34.5
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 1.3e-18 97.4 206 35.9
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 1.8e-18 97.1 225 43.6
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 3.9e-18 95.9 207 33.8
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 5.1e-18 95.5 206 33.5
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 5.1e-18 95.5 206 33.5
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 5.1e-18 95.5 200 34.5
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 2.5e-17 93.2 206 32.0
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 2.5e-17 93.2 206 32.0
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 5.7e-17 92.0 222 32.4
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 7.4e-17 91.7 104 51.9
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.3e-16 90.9 137 38.7
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 3.7e-16 89.4 206 31.1
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.7e-16 89.4 134 43.3
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 4.8e-16 89.0 200 33.5
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 6.2e-16 88.6 206 32.0
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 8.2e-16 88.2 186 37.6
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 8.2e-16 88.2 98 48.0
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.4e-15 87.4 200 31.0
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.4e-15 86.7 201 34.3
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 9.0e-15 84.7 214 33.2
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.6e-14 83.2 211 33.6
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 5.8e-14 82.0 214 31.3
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 2.9e-13 79.7 201 33.8
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 2.9e-13 79.7 185 36.2
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 6.5e-13 78.6 124 37.1
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 6.5e-13 78.6 112 41.1
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 8.4e-13 78.2 113 41.6
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.1e-12 77.8 109 41.3
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.2e-12 76.3 122 50.0
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 1.6e-11 73.9 131 37.4
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 2.1e-11 73.6 103 48.5
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 1.3e-10 70.9 145 35.2
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 3.9e-10 69.3 126 36.5
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 1.1e-09 67.8 86 54.7
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 8.2e-08 61.6 90 55.6
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 7.7e-06 55.1 46 54.3


User provided reference genes

Program Settings