Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 6.8e-96 354.0 178 100.0
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.6e-81 305.1 178 88.8
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.6e-81 305.1 178 88.8
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.6e-81 305.1 178 88.8
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.1e-80 303.5 178 89.3
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 9.9e-79 297.0 178 86.5
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 4.6e-76 288.1 178 81.5
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 1.0e-75 287.0 181 80.7
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 2.3e-75 285.8 178 80.3
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 3.0e-75 285.4 176 81.8
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 5.1e-75 284.6 178 79.8
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 1.1e-74 283.5 176 81.8
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 2.5e-74 282.3 178 82.0
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 8.1e-73 277.3 178 81.5
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 1.4e-72 276.6 178 80.9
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 1.8e-72 276.2 178 80.9
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 1.8e-72 276.2 178 78.7
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 2.3e-72 275.8 178 79.2
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 4.0e-72 275.0 178 79.2
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 1.2e-71 273.5 177 79.1
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 1.5e-71 273.1 183 78.1
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 4.4e-71 271.6 178 78.1
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 7.6e-71 270.8 179 78.2
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 9.9e-71 270.4 179 79.9
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.3e-70 270.0 178 77.0
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 2.9e-70 268.9 181 77.9
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 2.9e-70 268.9 178 77.5
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 2.9e-70 268.9 178 78.1
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 3.8e-70 268.5 178 75.3
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 8.4e-70 267.3 178 78.1
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 8.4e-70 267.3 178 77.0
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 1.1e-69 266.9 178 77.5
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.1e-69 266.9 225 68.0
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 1.4e-69 266.5 178 78.1
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.9e-69 266.2 178 77.5
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 2.4e-69 265.8 177 76.3
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 3.2e-69 265.4 178 74.7
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 9.2e-69 263.8 178 75.8
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.2e-68 263.5 177 74.6
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 1.2e-68 263.5 178 74.2
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.1e-68 262.7 178 74.2
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 3.5e-68 261.9 178 73.6
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 3.5e-68 261.9 202 69.8
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 6.0e-68 261.2 177 76.3
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 6.0e-68 261.2 177 76.8
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 1.0e-67 260.4 211 68.2
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 2.3e-67 259.2 178 74.2
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 2.3e-67 259.2 178 71.9
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 3.0e-67 258.8 181 73.5
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 1.1e-66 256.9 177 72.3
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 1.5e-66 256.5 178 72.5
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.5e-66 255.8 164 77.4
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 2.5e-66 255.8 179 74.9
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 2.5e-66 255.8 178 71.9
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 2.5e-66 255.8 175 74.3
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 3.3e-66 255.4 170 76.5
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 4.3e-66 255.0 164 77.4
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.6e-66 254.6 207 67.1
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.6e-66 254.6 207 67.1
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.6e-66 254.6 207 67.1
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 5.6e-66 254.6 178 71.9
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 5.6e-66 254.6 164 76.8
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 7.3e-66 254.2 178 73.6
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 7.3e-66 254.2 175 75.4
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 7.3e-66 254.2 178 72.5
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 7.3e-66 254.2 176 73.9
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 9.6e-66 253.8 181 72.9
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 1.2e-65 253.4 166 76.5
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.6e-65 253.1 164 76.2
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.7e-65 251.5 164 76.2
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 6.2e-65 251.1 178 70.2
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 8.1e-65 250.8 178 70.8
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 8.1e-65 250.8 178 70.8
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 8.1e-65 250.8 174 75.3
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 1.1e-64 250.4 164 75.6
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 2.4e-64 249.2 178 71.9
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 2.4e-64 249.2 178 71.9
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 3.1e-64 248.8 178 70.2
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 3.1e-64 248.8 188 68.6
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 4.0e-64 248.4 178 70.8
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 5.2e-64 248.1 178 69.7
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 6.9e-64 247.7 179 72.6
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 9.0e-64 247.3 178 69.1
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 9.0e-64 247.3 178 69.7
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 1.2e-63 246.9 178 74.2
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 1.5e-63 246.5 178 69.7
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 1.5e-63 246.5 178 69.7
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 2.0e-63 246.1 178 69.7
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 2.6e-63 245.7 178 68.5
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 3.4e-63 245.4 178 69.1
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 7.6e-63 244.2 178 68.5
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 1.7e-62 243.0 178 68.0
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 1.7e-62 243.0 178 68.0
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 2.2e-62 242.7 171 70.8
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 2.9e-62 242.3 176 68.8
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 4.9e-62 241.5 179 68.7
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 8.4e-62 240.7 171 70.2
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 8.4e-62 240.7 171 70.2
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.1e-61 240.4 178 69.1
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.4e-61 240.0 164 74.4
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 4.2e-61 238.4 179 69.8
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 9.3e-61 237.3 182 69.2
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 3.5e-60 235.3 179 66.5
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 3.0e-59 232.3 175 66.3
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 3.3e-58 228.8 149 77.2
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 1.3e-57 226.9 172 66.3
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.1e-56 223.8 139 79.1
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 1.1e-56 223.8 172 65.7
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 5.3e-56 221.5 232 53.9
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 6.9e-56 221.1 178 61.8
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.9e-56 221.1 216 58.8
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 2.0e-55 219.5 195 64.1
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 4.5e-55 218.4 120 89.2
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 3.8e-54 215.3 270 48.5
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 1.8e-51 206.5 188 63.3
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 5.3e-48 194.9 179 60.3
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 7.1e-45 184.5 178 61.2
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 6.0e-44 181.4 113 75.2
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 8.7e-43 177.6 175 54.3
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 6.2e-41 171.4 113 70.8
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.3e-38 163.7 114 71.1
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 6.5e-38 161.4 103 78.6
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 1.6e-36 156.8 139 51.1
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 7.9e-36 154.5 114 70.2
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 3.9e-35 152.1 122 66.4
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 8.7e-35 151.0 116 65.5
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 1.5e-34 150.2 116 63.8
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 1.4e-32 143.7 144 45.8
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 5.9e-31 138.3 123 63.4
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 2.5e-29 132.9 111 60.4
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 6.1e-28 128.3 108 62.0
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 3.9e-27 125.6 105 61.0
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 4.3e-26 122.1 81 70.4
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 4.3e-26 122.1 81 70.4
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 5.3e-24 115.2 121 42.1
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 2.2e-22 109.8 110 43.6
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.2e-22 109.8 106 56.6
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 6.5e-22 108.2 63 85.7
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 7.2e-21 104.8 89 66.3
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 1.2e-20 104.0 61 83.6
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.2e-20 104.0 64 79.7
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.1e-20 103.2 106 53.8
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 7.9e-20 101.3 65 73.8
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 2.0e-18 96.7 104 41.3
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 2.8e-17 92.8 89 49.4
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 3.7e-17 92.4 65 69.2
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 4.8e-17 92.0 106 43.4
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 7.7e-15 84.7 136 34.6
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 4.2e-13 79.0 50 76.0
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.7e-12 76.3 104 47.1
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 1.3e-06 57.4 32 84.4
QL04p024921 Quercus lobata HOM05D004886 ORTHO05D005868 2.2e-06 56.6 28 96.4
Phvul.001G073900 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 2.9e-06 56.2 36 77.8


User provided reference genes

Program Settings