Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044668 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 1.1e-47 193.0 97 100.0
CSS0032451 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 1.2e-41 172.9 97 90.7
CSS0027054 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 2.2e-40 168.7 106 83.0
CSS0035774 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 2.1e-22 109.0 97 63.9
CSS0039126 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 2.1e-22 109.0 97 63.9
Rhsim03G0085100 Rhododendron simsii HOM05D007539 ORTHO05D009315 1.3e-16 89.7 80 72.5
Dinv37358 Davidia involucrata HOM05D007539 ORTHO05D009315 1.8e-13 79.3 67 71.6
Lj2A124T70 Lonicera japonica HOM05D007539 ORTHO05D009315 1.9e-12 75.9 70 67.1
Manes.08G015800 Manihot esculenta HOM05D007539 ORTHO05D009315 2.5e-12 75.5 84 57.1
Actinidia39861 Actinidia chinensis HOM05D007539 ORTHO05D009315 7.4e-12 73.9 80 63.8
CSS0010589 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 4.8e-11 71.2 91 49.5
Nitab4.5_0009839g0010 Nicotiana tabacum HOM05D007539 ORTHO05D009315 2.4e-10 68.9 83 50.6
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 9.0e-10 67.0 90 47.8
CsaV3_3G036460 Cucumis sativus L. HOM05D007539 ORTHO05D009315 5.9e-09 64.3 78 50.0
Cc06_g04790 Coffea canephora HOM05D007539 ORTHO05D009315 1.0e-08 63.5 74 52.7
PGSC0003DMG400008599 Solanum tuberosum HOM05D007539 ORTHO05D009315 1.0e-08 63.5 84 57.1
Psat6g077160 Pisum sativum HOM05D007539 ORTHO05D009315 1.3e-08 63.2 55 61.8
PSO339G1895 Papaver somniferum HOM05D007539 ORTHO05D009315 1.7e-08 62.8 84 48.8
Peaxi162Scf00146g00014 Petunia axillaris HOM05D007539 ORTHO05D009315 1.7e-08 62.8 81 50.6
CANSAT80G1421 Cannabis sativa HOM05D007539 ORTHO05D009315 2.2e-08 62.4 37 81.1
RcHm_v2.0_Chr3g0471301 Rosa chinensis HOM05D007539 ORTHO05D009315 2.2e-08 62.4 79 54.4
FAN05G2086 Fragaria x ananassa HOM05D007539 ORTHO05D009315 3.8e-08 61.6 102 42.2
Cpa.g.sc5.125 Carica papaya HOM05D007539 ORTHO05D009315 5.0e-08 61.2 87 47.1
Ca_11568_v3 Cicer arietinum L. HOM05D007539 ORTHO05D009315 5.0e-08 61.2 52 65.4
COL.COLO4_22255 Corchorus olitorius HOM05D007539 ORTHO05D009315 5.0e-08 61.2 59 61.0
Sc20g0005850 Simmondsia chinensis HOM05D007539 ORTHO05D009315 5.0e-08 61.2 78 52.6
MSTRG.10338 Avicennia marina HOM05D007539 ORTHO05D009315 6.5e-08 60.8 47 66.0
MD12G1102800 Malus domestica HOM05D007539 ORTHO05D009315 6.5e-08 60.8 76 50.0
Solyc10g085820.2 Solanum lycopersicum HOM05D007539 ORTHO05D009315 6.5e-08 60.8 85 54.1
Sopen10g035220 Solanum pennellii HOM05D007539 ORTHO05D009315 6.5e-08 60.8 85 54.1
Duzib093G0735 Durio zibethinus HOM05D007539 ORTHO05D009315 8.5e-08 60.5 96 44.8
Eucgr.K02419 Eucalyptus grandis HOM05D007539 ORTHO05D009315 1.1e-07 60.1 35 82.9
HanXRQChr08g0218701 Helianthus annuus HOM05D007539 ORTHO05D009315 1.4e-07 59.7 73 50.7
SGA_v2.0_scaffold224G42914 Striga asiatica HOM05D007539 ORTHO05D009315 1.9e-07 59.3 51 64.7
ClCG10G019640 Citrullus lanatus HOM05D007539 ORTHO05D009315 2.5e-07 58.9 109 39.4
Eucgr.K02422 Eucalyptus grandis HOM05D007539 ORTHO05D009315 2.5e-07 58.9 35 80.0
Nn2g13907 Nelumbo nucifera HOM05D007539 ORTHO05D009315 3.2e-07 58.5 66 54.5
TWI74G0011 Tripterygium wilfordii HOM05D007539 ORTHO05D009315 4.2e-07 58.2 68 50.0
CiPaw.09G005200 Carya illinoinensis HOM05D007539 ORTHO05D009315 5.5e-07 57.8 95 47.4
Migut.L01732 Erythranthe guttata HOM05D007539 ORTHO05D009315 7.2e-07 57.4 42 69.0
TPR.G9909 Trifolium pratense HOM05D007539 ORTHO05D009315 7.2e-07 57.4 54 61.1
Aqoxy4G02594 Aquilegia oxysepala HOM05D007539 ORTHO05D009315 9.3e-07 57.0 53 62.3
FvH4_6g17220 Fragaria vesca HOM05D007539 ORTHO05D009315 9.3e-07 57.0 85 44.7
Thecc.05G075600 Theobroma cacao HOM05D007539 ORTHO05D009315 9.3e-07 57.0 99 44.4
MELO3C009408.2 Cucumis melo HOM05D007539 ORTHO05D009315 2.1e-06 55.8 54 53.7
Oeu045245.1 Olea europaea HOM05D007539 ORTHO05D009315 2.1e-06 55.8 65 50.8
QL07p041368 Quercus lobata HOM05D007539 ORTHO05D009315 2.1e-06 55.8 35 77.1
arahy.Tifrunner.gnm1.ann1.6XWD2H Arachis hypogaea HOM05D007539 ORTHO05D009315 3.6e-06 55.1 37 73.0
arahy.Tifrunner.gnm1.ann1.M3KAW1 Arachis hypogaea HOM05D007539 ORTHO05D009315 3.6e-06 55.1 37 73.0
Ciclev10009520m.g Citrus clementina HOM05D007539 ORTHO05D009315 4.6e-06 54.7 60 53.3
Gohir.A04G068300 Gossypium hirsutum HOM05D007539 ORTHO05D009315 7.9e-06 53.9 32 81.2
Gorai.009G410900 Gossypium raimondii HOM05D007539 ORTHO05D009315 7.9e-06 53.9 32 81.2


User provided reference genes

Program Settings