Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 8.9e-116 420.2 205 100.0
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 8.1e-101 370.5 179 100.0
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 8.7e-87 323.9 183 81.4
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 9.6e-86 320.5 178 82.6
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 3.6e-85 318.5 178 83.1
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 7.6e-83 310.8 178 81.5
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 3.5e-80 302.0 177 75.7
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 1.1e-78 297.0 177 76.8
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 3.3e-78 295.4 187 73.3
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 9.6e-78 293.9 176 75.6
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 3.6e-77 292.0 178 74.7
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 6.2e-77 291.2 176 75.0
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 8.1e-77 290.8 176 75.0
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 3.1e-76 288.9 177 72.9
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 5.3e-76 288.1 176 73.3
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 5.3e-76 288.1 176 73.3
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 6.9e-76 287.7 176 73.9
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 6.9e-76 287.7 176 73.3
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 6.9e-76 287.7 177 74.6
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 9.0e-76 287.3 176 73.9
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 9.0e-76 287.3 176 72.7
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 9.0e-76 287.3 184 72.8
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 1.2e-75 287.0 177 73.4
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.2e-75 287.0 178 73.0
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 2.0e-75 286.2 176 71.6
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 2.6e-75 285.8 177 71.8
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 4.5e-75 285.0 177 73.4
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 4.5e-75 285.0 176 74.4
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 7.6e-75 284.3 176 73.3
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 9.9e-75 283.9 177 69.5
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 1.3e-74 283.5 178 70.8
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 1.3e-74 283.5 178 70.8
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 1.3e-74 283.5 177 73.4
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 2.9e-74 282.3 176 72.2
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 2.9e-74 282.3 177 74.0
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 4.9e-74 281.6 176 72.2
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 1.4e-73 280.0 176 68.8
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 1.9e-73 279.6 176 72.2
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 2.4e-73 279.3 176 71.6
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 3.2e-73 278.9 176 69.3
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 4.2e-73 278.5 176 71.0
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 4.2e-73 278.5 176 73.9
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 4.2e-73 278.5 180 70.0
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 7.1e-73 277.7 177 70.1
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 9.3e-73 277.3 183 68.3
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 2.7e-72 275.8 177 68.9
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 3.5e-72 275.4 177 67.2
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 3.5e-72 275.4 177 67.2
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 6.0e-72 274.6 177 68.4
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 1.0e-71 273.9 177 70.1
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 1.8e-71 273.1 176 69.9
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.8e-71 273.1 177 72.3
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 3.9e-71 271.9 177 69.5
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 3.9e-71 271.9 177 67.2
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 5.1e-71 271.6 176 69.9
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 5.1e-71 271.6 177 67.8
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 6.7e-71 271.2 177 68.9
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 1.1e-70 270.4 177 68.9
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 4.3e-70 268.5 176 68.8
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 4.3e-70 268.5 183 66.1
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 9.6e-70 267.3 176 67.6
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 9.6e-70 267.3 176 68.8
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 1.3e-69 266.9 180 68.3
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 1.3e-69 266.9 176 69.3
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 2.8e-69 265.8 176 66.5
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 3.7e-69 265.4 178 70.2
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 3.7e-69 265.4 177 66.1
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 4.8e-69 265.0 177 66.1
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 6.2e-69 264.6 176 68.8
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 4.0e-68 261.9 183 63.9
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 1.2e-67 260.4 176 68.2
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 2.6e-67 259.2 176 68.8
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 4.5e-67 258.5 176 64.8
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 4.5e-67 258.5 181 63.5
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 4.5e-67 258.5 181 63.5
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 1.3e-66 256.9 177 66.7
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 1.7e-66 256.5 177 65.0
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 2.2e-66 256.1 176 65.3
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 2.2e-66 256.1 177 64.4
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 2.9e-66 255.8 177 65.0
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 6.5e-66 254.6 177 65.5
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 6.5e-66 254.6 165 72.7
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 8.4e-66 254.2 178 61.2
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 1.4e-65 253.4 176 67.6
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 1.9e-65 253.1 176 65.3
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 2.1e-64 249.6 185 62.7
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 2.1e-64 249.6 176 63.6
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 4.6e-64 248.4 185 63.2
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 4.6e-64 248.4 178 64.0
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 1.3e-63 246.9 188 62.2
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 1.3e-63 246.9 176 63.6
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 3.0e-63 245.7 176 63.6
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 8.7e-63 244.2 226 54.0
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 8.7e-63 244.2 200 57.0
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 1.5e-62 243.4 179 64.2
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.5e-62 243.4 181 67.4
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 1.6e-61 240.0 177 61.0
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 8.2e-61 237.7 177 62.1
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 1.2e-59 233.8 145 75.9
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 1.7e-58 229.9 177 61.0
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 4.2e-57 225.3 142 72.5
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 3.6e-56 222.2 178 57.9
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 5.1e-55 218.4 175 57.1
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 8.7e-55 217.6 177 58.2
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.1e-52 210.7 178 56.7
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 3.0e-47 192.6 193 51.3
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 3.0e-47 192.6 192 47.9
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 6.7e-47 191.4 192 47.9
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 2.0e-46 189.9 124 70.2
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 7.4e-46 188.0 194 50.0
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 5.9e-43 178.3 176 46.0
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 8.5e-42 174.5 194 46.9
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 7.2e-25 118.2 67 76.1
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 1.4e-23 114.0 124 41.9
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 1.3e-18 97.4 179 32.4
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 7.5e-14 81.6 188 28.7
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 1.7e-13 80.5 204 26.5
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 1.7e-13 80.5 190 27.4
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 2.8e-13 79.7 50 70.0
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 1.4e-12 77.4 60 55.0
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 3.1e-12 76.3 182 26.9
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 4.1e-12 75.9 72 54.2
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 4.1e-12 75.9 204 27.0
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 7.0e-12 75.1 52 65.4
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.6e-11 73.9 209 26.3
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 5.9e-11 72.0 189 31.7
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 5.0e-10 68.9 183 25.7
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.1e-08 63.5 141 29.1
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.6e-06 56.6 151 28.5
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 3.4e-06 56.2 171 24.6
SEGI_36323 Sequoiadendron giganteum HOM05D004072 ORTHO05D385563 5.7e-06 55.5 52 51.9


User provided reference genes

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