Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044643 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 5.2e-75 284.3 141 100.0
CSS0020186 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 2.2e-73 278.9 141 97.9
CSS0012854 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 2.9e-57 225.3 141 83.0
CSS0005611 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.2e-50 203.4 136 77.9
CSS0035788 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 4.0e-43 178.3 150 67.3
CSS0025796 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 7.1e-40 167.5 136 66.9
CSS0014542 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 2.6e-34 149.1 136 64.7
CSS0009838 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.0e-25 120.6 116 60.3
RhsimUnG0020700 Rhododendron simsii HOM05D003429 ORTHO05D003873 2.2e-20 102.8 117 50.4
vmacro07588 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 2.8e-20 102.4 117 49.6
Actinidia13982 Actinidia chinensis HOM05D003429 ORTHO05D003873 4.8e-20 101.7 117 48.7
Actinidia14028 Actinidia chinensis HOM05D003429 ORTHO05D003873 4.8e-20 101.7 117 48.7
Actinidia17975 Actinidia chinensis HOM05D003429 ORTHO05D003873 4.8e-20 101.7 117 48.7
Actinidia37867 Actinidia chinensis HOM05D003429 ORTHO05D003873 4.8e-20 101.7 117 48.7
Solyc01g056520.3 Solanum lycopersicum HOM05D003429 ORTHO05D003873 1.1e-13 80.5 136 43.4
Sopen01g020360 Solanum pennellii HOM05D003429 ORTHO05D003873 1.1e-13 80.5 136 43.4
Peaxi162Scf00139g01028 Petunia axillaris HOM05D003429 ORTHO05D003873 2.6e-13 79.3 111 47.7
Nn7g37083 Nelumbo nucifera HOM05D003429 ORTHO05D003873 4.4e-13 78.6 100 47.0
Nitab4.5_0002094g0090 Nicotiana tabacum HOM05D003429 ORTHO05D003873 5.7e-13 78.2 111 46.8
Cpa.g.sc33.148 Carica papaya HOM05D003429 ORTHO05D003873 7.4e-13 77.8 111 46.8
Nitab4.5_0000211g0060 Nicotiana tabacum HOM05D003429 ORTHO05D003873 1.3e-12 77.0 111 46.8
PGR031G2936 Punica granatum HOM05D003429 ORTHO05D003873 1.7e-12 76.6 111 45.0
MD02G1207800 Malus domestica HOM05D003429 ORTHO05D003873 2.8e-12 75.9 111 43.2
AL6G16070 Arabidopsis lyrata HOM05D003429 ORTHO05D003873 3.7e-12 75.5 112 43.8
Prupe.2G050900 Prunus persica HOM05D003429 ORTHO05D003873 3.7e-12 75.5 112 44.6
Prupe.2G051400 Prunus persica HOM05D003429 ORTHO05D003873 3.7e-12 75.5 112 44.6
QL04p022427 Quercus lobata HOM05D003429 ORTHO05D003873 3.7e-12 75.5 118 43.2
Atru.chr12.1194 Acer truncatum HOM05D003429 ORTHO05D003873 4.8e-12 75.1 111 45.0
Aqoxy1G01517 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 4.8e-12 75.1 100 46.0
BcaB05g21683 Brassica carinata HOM05D003429 ORTHO05D003873 4.8e-12 75.1 112 42.9
C02p02580 Brassica napus HOM05D003429 ORTHO05D003873 4.8e-12 75.1 112 42.9
BolC2t06224H Brassica oleracea HOM05D003429 ORTHO05D003873 4.8e-12 75.1 112 42.9
GSVIVG01012453001 Vitis vinifera HOM05D003429 ORTHO05D003873 4.8e-12 75.1 100 48.0
Carub.0006s0499 Capsella rubella HOM05D003429 ORTHO05D003873 6.3e-12 74.7 112 42.9
Aqoxy5G00851 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 8.2e-12 74.3 100 46.0
Cfa010982 Carpinus fangiana HOM05D003429 ORTHO05D003873 8.2e-12 74.3 111 44.1
Thhalv10012516m.g Eutrema salsugineum HOM05D003429 ORTHO05D003873 8.2e-12 74.3 112 43.8
AT5G06120 Arabidopsis thaliana HOM05D003429 ORTHO05D003873 1.1e-11 73.9 112 42.9
CiPaw.13G018300 Carya illinoinensis HOM05D003429 ORTHO05D003873 1.1e-11 73.9 111 43.2
Potri.003G189500 Populus trichocarpa HOM05D003429 ORTHO05D003873 1.1e-11 73.9 111 45.0
GSVIVG01025856001 Vitis vinifera HOM05D003429 ORTHO05D003873 1.1e-11 73.9 111 42.3
arahy.Tifrunner.gnm1.ann1.3RNG04 Arachis hypogaea HOM05D003429 ORTHO05D003873 1.4e-11 73.6 111 44.1
arahy.Tifrunner.gnm1.ann1.P7SNS1 Arachis hypogaea HOM05D003429 ORTHO05D003873 1.4e-11 73.6 111 44.1
BraA02t04869Z Brassica rapa HOM05D003429 ORTHO05D003873 1.4e-11 73.6 112 42.0
Psat5g001960 Pisum sativum HOM05D003429 ORTHO05D003873 1.4e-11 73.6 112 43.8
Sp6g36790 Schrenkiella parvula HOM05D003429 ORTHO05D003873 1.4e-11 73.6 112 42.0
THA.LOC104816588 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 1.4e-11 73.6 112 42.0
EL10Ac4g08832 Beta vulgaris HOM05D003429 ORTHO05D003873 1.8e-11 73.2 100 46.0
Migut.B01173 Erythranthe guttata HOM05D003429 ORTHO05D003873 1.8e-11 73.2 110 44.5
Glyma.04G003000 Glycine max HOM05D003429 ORTHO05D003873 1.8e-11 73.2 112 44.6
Lj1g0005148 Lotus japonicus HOM05D003429 ORTHO05D003873 1.8e-11 73.2 112 44.6
MBI19_g25231_MAGBIO Magnolia biondii HOM05D003429 ORTHO05D003873 1.8e-11 73.2 100 44.0
Potri.001G036100 Populus trichocarpa HOM05D003429 ORTHO05D003873 1.8e-11 73.2 111 44.1
Sabra01G0025100 Salix brachista HOM05D003429 ORTHO05D003873 1.8e-11 73.2 111 44.1
Lj9A653G52 Lonicera japonica HOM05D003429 ORTHO05D003873 2.4e-11 72.8 112 42.9
Lalb_Chr11g0061181 Lupinus albus HOM05D003429 ORTHO05D003873 3.1e-11 72.4 111 44.1
Medtr1g051125 Medicago truncatula HOM05D003429 ORTHO05D003873 3.1e-11 72.4 100 40.0
TPR.G13799 Trifolium pratense HOM05D003429 ORTHO05D003873 3.1e-11 72.4 100 41.0
Dinv03754 Davidia involucrata HOM05D003429 ORTHO05D003873 4.1e-11 72.0 111 42.3
MD07G1118000 Malus domestica HOM05D003429 ORTHO05D003873 4.1e-11 72.0 111 42.3
THA.LOC104826824 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 4.1e-11 72.0 112 40.2
AUR62035521 Chenopodium quinoa HOM05D003429 ORTHO05D003873 5.3e-11 71.6 111 42.3
AUR62041296 Chenopodium quinoa HOM05D003429 ORTHO05D003873 5.3e-11 71.6 111 42.3
MELO3C011384.2 Cucumis melo HOM05D003429 ORTHO05D003873 5.3e-11 71.6 111 43.2
CsaV3_6G035760 Cucumis sativus L. HOM05D003429 ORTHO05D003873 5.3e-11 71.6 111 43.2
Medtr3g118040 Medicago truncatula HOM05D003429 ORTHO05D003873 5.3e-11 71.6 112 42.9
Hund06843 Selenicereus undatus HOM05D003429 ORTHO05D003873 5.3e-11 71.6 114 40.4
Glyma.06G003000 Glycine max HOM05D003429 ORTHO05D003873 7.0e-11 71.2 112 43.8
PSO339G2530 Papaver somniferum HOM05D003429 ORTHO05D003873 7.0e-11 71.2 100 43.0
PSO384G1706 Papaver somniferum HOM05D003429 ORTHO05D003873 7.0e-11 71.2 100 43.0
unitig_22.g5335 Utricularia gibba HOM05D003429 ORTHO05D003873 7.0e-11 71.2 111 40.5
Ca_14865_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 9.1e-11 70.9 100 40.0
QL07p014239 Quercus lobata HOM05D003429 ORTHO05D003873 9.1e-11 70.9 100 43.0
RcHm_v2.0_Chr1g0329811 Rosa chinensis HOM05D003429 ORTHO05D003873 9.1e-11 70.9 111 42.3
SalBow5G1634 Salvia bowleyana HOM05D003429 ORTHO05D003873 9.1e-11 70.9 111 42.3
Sc09g0004760 Simmondsia chinensis HOM05D003429 ORTHO05D003873 9.1e-11 70.9 111 43.2
ECA248G1206 Erigeron canadensis HOM05D003429 ORTHO05D003873 1.2e-10 70.5 110 42.7
Oeu013041.2 Olea europaea HOM05D003429 ORTHO05D003873 1.2e-10 70.5 111 40.5
TAR629G1055 Trochodendron aralioides HOM05D003429 ORTHO05D003873 1.2e-10 70.5 111 42.3
MSTRG.20488 Avicennia marina HOM05D003429 ORTHO05D003873 1.6e-10 70.1 111 42.3
BcaC06g32321 Brassica carinata HOM05D003429 ORTHO05D003873 1.6e-10 70.1 112 40.2
A10p30310 Brassica napus HOM05D003429 ORTHO05D003873 1.6e-10 70.1 101 42.6
C09p70720 Brassica napus HOM05D003429 ORTHO05D003873 1.6e-10 70.1 112 40.2
BolC9t59828H Brassica oleracea HOM05D003429 ORTHO05D003873 1.6e-10 70.1 112 40.2
BraA10t45069Z Brassica rapa HOM05D003429 ORTHO05D003873 1.6e-10 70.1 101 42.6
Dinv04984 Davidia involucrata HOM05D003429 ORTHO05D003873 1.6e-10 70.1 111 42.3
TPR.G38508 Trifolium pratense HOM05D003429 ORTHO05D003873 1.6e-10 70.1 112 42.0
Eucgr.G03181 Eucalyptus grandis HOM05D003429 ORTHO05D003873 2.0e-10 69.7 111 41.4
Os03g0616700 Oryza sativa ssp. japonica HOM05D003429 ORTHO05D003873 2.0e-10 69.7 100 42.0
Phvul.009G118700 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 2.0e-10 69.7 111 41.4
Sed0026988 Sechium edule HOM05D003429 ORTHO05D003873 2.0e-10 69.7 111 43.2
CANSAT56G3732 Cannabis sativa HOM05D003429 ORTHO05D003873 2.6e-10 69.3 111 42.3
Thecc.10G129100 Theobroma cacao HOM05D003429 ORTHO05D003873 2.6e-10 69.3 111 42.3
TWI53G2015 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 2.6e-10 69.3 101 42.6
Cc00_g07020 Coffea canephora HOM05D003429 ORTHO05D003873 3.5e-10 68.9 100 44.0
Gohir.A10G192300 Gossypium hirsutum HOM05D003429 ORTHO05D003873 3.5e-10 68.9 111 40.5
VMungo1309G0597 Vigna mungo HOM05D003429 ORTHO05D003873 3.5e-10 68.9 112 42.0
VMungo0720G0379 Vigna mungo HOM05D003429 ORTHO05D003873 4.5e-10 68.6 100 41.0
Ciclev10000149m.g Citrus clementina HOM05D003429 ORTHO05D003873 5.9e-10 68.2 111 41.4
Haze_02954 Corylus avellana HOM05D003429 ORTHO05D003873 5.9e-10 68.2 136 38.2
Gohir.D10G200200 Gossypium hirsutum HOM05D003429 ORTHO05D003873 7.7e-10 67.8 111 39.6
Gorai.011G224400 Gossypium raimondii HOM05D003429 ORTHO05D003873 7.7e-10 67.8 111 39.6
Manes.04G153600 Manihot esculenta HOM05D003429 ORTHO05D003873 7.7e-10 67.8 111 40.5
Duzib114G0344 Durio zibethinus HOM05D003429 ORTHO05D003873 1.0e-09 67.4 111 41.4
Lsat_1_v5_gn_1_118001 Lactuca sativa HOM05D003429 ORTHO05D003873 1.0e-09 67.4 99 43.4
TWI63G1019 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 1.0e-09 67.4 111 43.2
Aa31LG11G7100 Aethionema arabicum HOM05D003429 ORTHO05D003873 1.3e-09 67.0 73 49.3
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 1.3e-09 67.0 100 37.0
Duzib128G2024 Durio zibethinus HOM05D003429 ORTHO05D003873 1.3e-09 67.0 111 41.4
Sc13g0000830 Simmondsia chinensis HOM05D003429 ORTHO05D003873 1.3e-09 67.0 101 36.6
Zm00001eb278500 Zea mays HOM05D003429 ORTHO05D003873 2.2e-09 66.2 116 36.2
FvH4_7g04530 Fragaria vesca HOM05D003429 ORTHO05D003873 2.9e-09 65.9 111 39.6
FAN03G0932 Fragaria x ananassa HOM05D003429 ORTHO05D003873 2.9e-09 65.9 111 39.6
FAN06G0150 Fragaria x ananassa HOM05D003429 ORTHO05D003873 2.9e-09 65.9 111 39.6
FAN06G3547 Fragaria x ananassa HOM05D003429 ORTHO05D003873 2.9e-09 65.9 111 39.6
FAN10G0722 Fragaria x ananassa HOM05D003429 ORTHO05D003873 2.9e-09 65.9 111 39.6
HanXRQChr16g0510451 Helianthus annuus HOM05D003429 ORTHO05D003873 2.9e-09 65.9 110 40.9
Manes.11G010000 Manihot esculenta HOM05D003429 ORTHO05D003873 2.9e-09 65.9 112 41.1
Glyma.10G104900 Glycine max HOM05D003429 ORTHO05D003873 3.8e-09 65.5 100 39.0
HPP92_028707 Vanilla planifolia HOM05D003429 ORTHO05D003873 3.8e-09 65.5 101 37.6
ATR0782G154 Amborella trichopoda HOM05D003429 ORTHO05D003873 5.0e-09 65.1 100 38.0
FAN01G2134 Fragaria x ananassa HOM05D003429 ORTHO05D003873 5.0e-09 65.1 111 39.6
SGA_v2.0_scaffold164G38141 Striga asiatica HOM05D003429 ORTHO05D003873 6.5e-09 64.7 100 39.0
Phvul.007G243600 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 1.1e-08 63.9 100 36.0
DCAR_013522 Daucus carota HOM05D003429 ORTHO05D003873 1.5e-08 63.5 100 38.0
Hund24514 Selenicereus undatus HOM05D003429 ORTHO05D003873 1.5e-08 63.5 101 37.6
SHI11319 Sapria himalayana HOM05D003429 ORTHO05D003873 3.2e-08 62.4 71 49.3
SMO367G0627 Selaginella moellendorffii HOM05D003429 ORTHO05D003873 1.6e-07 60.1 100 32.0
Lalb_Chr02g0156721 Lupinus albus HOM05D003429 ORTHO05D003873 2.7e-07 59.3 100 38.0
DCAR_022673 Daucus carota HOM05D003429 ORTHO05D003873 1.4e-06 57.0 72 47.2
AUR62018433 Chenopodium quinoa HOM05D003429 ORTHO05D003873 1.8e-06 56.6 100 34.0
Psat6g086560 Pisum sativum HOM05D003429 ORTHO05D003873 3.0e-06 55.8 59 45.8
CBR_g30950 Chara braunii HOM05D003429 ORTHO05D003873 4.0e-06 55.5 100 33.0
AUR62021000 Chenopodium quinoa HOM05D003429 ORTHO05D003873 4.0e-06 55.5 96 34.4
Pp3c5_25430 Physcomitrium patens HOM05D003429 ORTHO05D003873 8.8e-06 54.3 100 31.0


User provided reference genes

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