Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044635 Camellia sinensis var. sinensis HOM05D025174 ORTHO05D012910 7.6e-118 427.2 215 100.0
CSS0029848 Camellia sinensis var. sinensis HOM05D025174 ORTHO05D012910 7.7e-94 347.4 203 85.2
CSS0041169 Camellia sinensis var. sinensis HOM05D025174 ORTHO05D012910 4.1e-71 271.9 203 71.4
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.0e-17 93.6 106 43.4
CSS0039165 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.8e-17 92.0 93 47.3
CSS0016144 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.9e-16 89.0 98 44.9
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.9e-16 89.0 98 44.9
CSS0038037 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 4.2e-15 85.9 113 38.1
Atru.chr6.2848 Acer truncatum HOM05D000003 ORTHO05D000022 5.4e-15 85.5 114 38.6
Atru.chr8.1058 Acer truncatum HOM05D000003 ORTHO05D000004 5.4e-15 85.5 116 35.3
vmacro01820 Vaccinium macrocarpon HOM05D001647 ORTHO05D001191 9.3e-15 84.7 110 36.4
Atru.chr2.1761 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-14 84.3 132 36.4
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-14 83.6 110 37.3
CSS0009370 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.5e-14 82.8 111 34.2
Atru.chr11.757 Acer truncatum HOM05D000003 ORTHO05D000004 4.6e-14 82.4 110 35.5
CSS0032702 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 4.6e-14 82.4 90 42.2
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 7.9e-14 81.6 114 36.0
Atru.chr1.1336 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-13 80.9 110 35.5
Atru.chr1.1302 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-13 80.5 114 35.1
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.0e-13 79.7 90 41.1
CSS0038564 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.9e-13 79.3 47 66.0
Atru.chr1.776 Acer truncatum HOM05D000003 ORTHO05D000004 6.7e-13 78.6 110 34.5
Atru.chr2.2708 Acer truncatum HOM05D000003 ORTHO05D000022 6.7e-13 78.6 114 35.1
CSS0014297 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 6.7e-13 78.6 111 34.2
Lj2P1198T31 Lonicera japonica HOM05D039584 ORTHO05D012910 6.7e-13 78.6 80 43.8
Atru.chr1.3365 Acer truncatum HOM05D000003 ORTHO05D000004 8.7e-13 78.2 112 34.8
Atru.chr13.2390 Acer truncatum HOM05D000003 ORTHO05D000004 8.7e-13 78.2 116 35.3
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 1.1e-12 77.8 114 35.1
Atru.chr2.971 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-12 77.8 114 37.7
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 1.1e-12 77.8 111 40.5
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 1.1e-12 77.8 111 40.5
Atru.chr6.1397 Acer truncatum HOM05D000003 ORTHO05D000022 1.5e-12 77.4 112 36.6
Atru.chr4.661 Acer truncatum HOM05D000003 ORTHO05D000022 1.9e-12 77.0 94 43.6
Prupe.4G161900 Prunus persica HOM05D000003 ORTHO05D000022 2.5e-12 76.6 111 40.5
RcHm_v2.0_Chr1g0382551 Rosa chinensis HOM05D000003 ORTHO05D000004 2.5e-12 76.6 111 43.2
Atru.chr13.1101 Acer truncatum HOM05D000003 ORTHO05D000022 4.3e-12 75.9 114 31.6
Lj4P763T2 Lonicera japonica HOM05D039584 ORTHO05D012910 4.3e-12 75.9 81 45.7
Atru.chr2.2395 Acer truncatum HOM05D000003 ORTHO05D000022 7.4e-12 75.1 110 36.4
Atru.chr4.1146 Acer truncatum HOM05D000003 ORTHO05D000022 9.6e-12 74.7 97 39.2
Atru.chr3.3019 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-11 74.3 110 32.7
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-11 74.3 114 35.1
Atru.chr13.1154 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-11 73.9 110 33.6
Atru.chr1.2620 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-11 73.2 78 47.4
RcHm_v2.0_Chr6g0291741 Rosa chinensis HOM05D000003 ORTHO05D000004 2.8e-11 73.2 112 34.8
Atru.chr5.2276 Acer truncatum HOM05D000003 ORTHO05D000004 3.6e-11 72.8 112 34.8
Lju682P1T12 Lonicera japonica HOM05D025174 ORTHO05D012910 3.6e-11 72.8 80 38.8
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 3.6e-11 72.8 141 36.2
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 4.8e-11 72.4 110 32.7
Atru.chr5.2238 Acer truncatum HOM05D000003 ORTHO05D000004 4.8e-11 72.4 110 33.6
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 4.8e-11 72.4 110 36.4
FvH4_6g46881 Fragaria vesca HOM05D000003 ORTHO05D000022 4.8e-11 72.4 135 31.9
Manes.06G020101 Manihot esculenta HOM05D000003 ORTHO05D000004 4.8e-11 72.4 110 34.5
Atru.chr6.1028 Acer truncatum HOM05D000003 ORTHO05D000004 6.2e-11 72.0 102 35.3
Atru.chr2.1419 Acer truncatum HOM05D000003 ORTHO05D000022 8.1e-11 71.6 110 33.6
Atru.chr6.1145 Acer truncatum HOM05D000003 ORTHO05D012910 8.1e-11 71.6 110 33.6
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 8.1e-11 71.6 128 35.2
RcHm_v2.0_Chr5g0053531 Rosa chinensis HOM05D000003 ORTHO05D000004 8.1e-11 71.6 112 40.2
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-10 71.2 85 42.4
CSS0048939 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.1e-10 71.2 70 41.4
Atru.chr10.890 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-10 70.9 110 33.6
Atru.chr12.1990 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-10 70.5 83 41.0
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-10 69.7 110 32.7
Aqoxy12s031 Aquilegia oxysepala HOM05D000003 ORTHO05D012910 3.1e-10 69.7 110 35.5
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.1e-10 69.7 90 37.8
Lj2g0002183 Lotus japonicus HOM05D010643 ORTHO05D012910 3.1e-10 69.7 116 30.2
Atru.chr12.2484 Acer truncatum HOM05D000003 ORTHO05D000022 4.0e-10 69.3 77 42.9
Atru.chr4.136 Acer truncatum HOM05D000003 ORTHO05D000022 4.0e-10 69.3 111 36.0
Atru.chr2.2101 Acer truncatum HOM05D000003 ORTHO05D000022 5.3e-10 68.9 111 33.3
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 5.3e-10 68.9 112 33.9
Atru.chr5.2550 Acer truncatum HOM05D000003 ORTHO05D000004 9.0e-10 68.2 112 33.0
Actinidia07755 Actinidia chinensis HOM05D000003 ORTHO05D012910 9.0e-10 68.2 97 37.1
Lj7P445T11 Lonicera japonica HOM05D025174 ORTHO05D012910 9.0e-10 68.2 88 35.2
Psat1g083000 Pisum sativum HOM05D000003 ORTHO05D015733 9.0e-10 68.2 115 30.4
Atru.chr7.949 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-09 67.8 110 30.0
Sabra01G0106600 Salix brachista HOM05D000003 ORTHO05D000022 1.2e-09 67.8 110 31.8
LjContig00357g0004525 Lotus japonicus HOM05D000003 ORTHO05D000022 1.5e-09 67.4 110 31.8
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-09 67.0 110 32.7
RcHm_v2.0_Chr2g0144631 Rosa chinensis HOM05D000003 ORTHO05D000022 2.0e-09 67.0 93 37.6
Atru.chr4.29 Acer truncatum HOM05D000003 ORTHO05D000022 3.4e-09 66.2 114 32.5
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 3.4e-09 66.2 113 36.3
Glyma.06G010150 Glycine max HOM05D000003 ORTHO05D000004 3.4e-09 66.2 110 30.9
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.4e-09 66.2 128 29.7
Atru.chr1.1484 Acer truncatum HOM05D000003 ORTHO05D000022 4.5e-09 65.9 123 32.5
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 4.5e-09 65.9 114 34.2
Lj6g0017573 Lotus japonicus HOM05D000003 ORTHO05D000004 5.8e-09 65.5 118 33.9
CSS0036731 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.3e-08 64.3 75 40.0
Atru.chr4.1025 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-08 63.9 114 29.8
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-08 63.5 78 41.0
FvH4_3g30492 Fragaria vesca HOM05D000003 ORTHO05D000022 2.2e-08 63.5 112 34.8
Lj4g0003656 Lotus japonicus HOM05D000003 ORTHO05D000007 2.2e-08 63.5 110 31.8
Atru.chr10.713 Acer truncatum HOM05D000003 ORTHO05D000022 3.8e-08 62.8 118 33.9
COL.COLO4_08472 Corchorus olitorius HOM05D000003 ORTHO05D000022 3.8e-08 62.8 113 31.9
Atru.chr2.451 Acer truncatum HOM05D000003 ORTHO05D000004 6.4e-08 62.0 84 36.9
Atru.ctg664.6 Acer truncatum HOM05D000003 ORTHO05D000022 8.4e-08 61.6 58 41.4
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 8.4e-08 61.6 110 31.8
Atru.chr11.1461 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-07 60.8 114 27.2
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-07 60.8 52 44.2
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-07 60.8 110 30.9
Thecc.01G193900 Theobroma cacao HOM05D015157 ORTHO05D011148 1.4e-07 60.8 144 28.5
QL06p036576 Quercus lobata HOM05D000003 ORTHO05D000004 1.9e-07 60.5 116 30.2
AUR62034895 Chenopodium quinoa HOM05D000003 ORTHO05D000022 2.4e-07 60.1 83 34.9
FvH4_1g24182 Fragaria vesca HOM05D000003 ORTHO05D000004 2.4e-07 60.1 74 44.6
Lj8P259T33 Lonicera japonica HOM05D064272 ORTHO05D012910 3.2e-07 59.7 107 30.8
RcHm_v2.0_Chr1g0321741 Rosa chinensis HOM05D000003 ORTHO05D012910 3.2e-07 59.7 45 53.3
CANSAT54G3006 Cannabis sativa HOM05D000003 ORTHO05D000167 5.5e-07 58.9 112 30.4
CANSAT80G0272 Cannabis sativa HOM05D000003 ORTHO05D000004 5.5e-07 58.9 84 33.3
COL.COLO4_07368 Corchorus olitorius HOM05D000003 ORTHO05D000022 5.5e-07 58.9 113 31.9
Lj1g0008461 Lotus japonicus HOM05D010643 ORTHO05D011148 5.5e-07 58.9 114 26.3
Lj2g0018095 Lotus japonicus HOM05D000003 ORTHO05D034584 5.5e-07 58.9 110 28.2
Lj5g0000021 Lotus japonicus HOM05D010643 ORTHO05D011148 5.5e-07 58.9 114 26.3
RcHm_v2.0_Chr1g0384551 Rosa chinensis HOM05D000003 ORTHO05D000004 5.5e-07 58.9 76 40.8
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 5.5e-07 58.9 117 29.1
Aqoxy5G02603 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 7.1e-07 58.5 110 28.2
Lju897C2T1 Lonicera japonica HOM05D000003 ORTHO05D000126 7.1e-07 58.5 110 31.8
QL04p070512 Quercus lobata HOM05D008417 ORTHO05D010741 7.1e-07 58.5 115 27.8
Atru.chr12.1755 Acer truncatum HOM05D000003 ORTHO05D000022 9.3e-07 58.2 114 27.2
AUR62015281 Chenopodium quinoa HOM05D000003 ORTHO05D000004 9.3e-07 58.2 120 32.5
Lj6g0022193 Lotus japonicus HOM05D010643 ORTHO05D013332 9.3e-07 58.2 123 31.7
Nitab4.5_0005020g0020 Nicotiana tabacum HOM05D009389 ORTHO05D012243 9.3e-07 58.2 101 29.7
FvH4_3g27901 Fragaria vesca HOM05D000003 ORTHO05D000022 1.2e-06 57.8 124 33.9
Lj4P628T36 Lonicera japonica HOM05D000003 ORTHO05D000004 1.2e-06 57.8 130 23.8
Nitab4.5_0002091g0100 Nicotiana tabacum HOM05D009389 ORTHO05D012243 1.2e-06 57.8 100 29.0
Aa31LG9G5230 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-06 57.4 116 30.2
SGA_v2.0_scaffold255G45431 Striga asiatica HOM05D021982 ORTHO05D012910 1.6e-06 57.4 96 31.2
THA.LOC104799794 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 1.6e-06 57.4 119 27.7
Atru.chr9.1174 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-06 57.0 113 27.4
CANSAT21G0771 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-06 57.0 82 31.7
CANSAT25G2587 Cannabis sativa HOM05D000003 ORTHO05D000167 2.1e-06 57.0 123 28.5
QL07p036110 Quercus lobata HOM05D001729 ORTHO05D001155 2.1e-06 57.0 118 31.4
COL.COLO4_10453 Corchorus olitorius HOM05D000003 ORTHO05D000022 3.5e-06 56.2 110 27.3
CANSAT56G0354 Cannabis sativa HOM05D000003 ORTHO05D000167 4.6e-06 55.8 102 33.3
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 6.0e-06 55.5 51 43.1
QL11p009033 Quercus lobata HOM05D000003 ORTHO05D000004 6.0e-06 55.5 117 28.2
QL93p2025_0060 Quercus lobata HOM05D000003 ORTHO05D000004 6.0e-06 55.5 76 30.3
PSO591G0286 Papaver somniferum HOM05D000003 ORTHO05D000004 7.9e-06 55.1 103 33.0
QL09p017510 Quercus lobata HOM05D000003 ORTHO05D000004 7.9e-06 55.1 110 29.1


User provided reference genes

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