Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.9e-76 289.3 166 100.0
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 5.8e-25 118.2 106 69.8
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.3e-24 117.1 107 68.2
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 1.8e-21 106.7 132 54.5
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 3.0e-21 105.9 105 68.6
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 1.1e-20 104.0 111 63.1
CSS0004409 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 8.2e-19 97.8 92 66.3
CSS0027281 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 8.2e-19 97.8 92 66.3
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 1.4e-18 97.1 108 57.4
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 2.4e-18 96.3 61 83.6
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 3.1e-18 95.9 65 80.0
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 5.3e-18 95.1 113 54.0
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 9.0e-18 94.4 106 59.4
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 9.0e-18 94.4 106 59.4
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 1.2e-17 94.0 107 52.3
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 1.5e-17 93.6 109 55.0
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 2.6e-17 92.8 125 50.4
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 2.6e-17 92.8 62 79.0
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 2.6e-17 92.8 62 79.0
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 2.6e-17 92.8 110 53.6
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 3.4e-17 92.4 107 56.1
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 3.4e-17 92.4 87 62.1
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 3.4e-17 92.4 99 57.6
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 4.5e-17 92.0 107 57.0
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 4.5e-17 92.0 68 67.6
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 4.5e-17 92.0 60 83.3
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 4.5e-17 92.0 60 83.3
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 5.9e-17 91.7 88 61.4
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 5.9e-17 91.7 72 70.8
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 5.9e-17 91.7 113 48.7
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 5.9e-17 91.7 61 82.0
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 5.9e-17 91.7 105 57.1
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 7.7e-17 91.3 60 80.0
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.0e-16 90.9 59 81.4
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.0e-16 90.9 59 81.4
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 1.0e-16 90.9 112 57.1
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.7e-16 90.1 113 46.9
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 2.2e-16 89.7 61 72.1
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 2.2e-16 89.7 100 55.0
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 2.9e-16 89.4 68 64.7
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 2.9e-16 89.4 113 52.2
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 2.9e-16 89.4 97 56.7
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 3.8e-16 89.0 67 73.1
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 5.0e-16 88.6 95 56.8
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 5.0e-16 88.6 58 77.6
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 5.0e-16 88.6 111 51.4
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 5.0e-16 88.6 111 51.4
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 5.0e-16 88.6 62 74.2
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 6.5e-16 88.2 108 52.8
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 6.5e-16 88.2 71 64.8
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 6.5e-16 88.2 60 75.0
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 8.5e-16 87.8 64 68.8
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 8.5e-16 87.8 110 53.6
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 8.5e-16 87.8 67 68.7
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 8.5e-16 87.8 61 72.1
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 1.1e-15 87.4 78 60.3
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.1e-15 87.4 109 53.2
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.1e-15 87.4 109 52.3
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 1.9e-15 86.7 58 70.7
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 1.9e-15 86.7 61 73.8
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 2.5e-15 86.3 75 64.0
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 2.5e-15 86.3 75 64.0
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 2.5e-15 86.3 113 49.6
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 2.5e-15 86.3 111 50.5
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 2.5e-15 86.3 112 50.0
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 3.2e-15 85.9 55 80.0
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 4.2e-15 85.5 54 83.3
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 4.2e-15 85.5 60 75.0
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 4.2e-15 85.5 114 49.1
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 7.2e-15 84.7 93 53.8
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 7.2e-15 84.7 66 69.7
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 9.4e-15 84.3 105 53.3
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 1.2e-14 84.0 114 50.0
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 1.2e-14 84.0 59 74.6
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 1.6e-14 83.6 70 68.6
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 1.6e-14 83.6 84 58.3
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 2.7e-14 82.8 114 50.0
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 3.6e-14 82.4 102 52.0
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 7.9e-14 81.3 58 69.0
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 1.8e-13 80.1 68 64.7
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 1.8e-13 80.1 93 51.6
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 2.3e-13 79.7 58 70.7
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 3.0e-13 79.3 68 63.2
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 3.0e-13 79.3 61 70.5
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 5.1e-13 78.6 65 64.6
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 5.1e-13 78.6 65 64.6
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 5.1e-13 78.6 64 65.6
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 5.1e-13 78.6 99 50.5
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 6.7e-13 78.2 99 49.5
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 8.8e-13 77.8 58 69.0
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 8.8e-13 77.8 65 63.1
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 1.1e-12 77.4 65 64.6
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 1.5e-12 77.0 65 64.6
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 1.5e-12 77.0 65 64.6
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 1.5e-12 77.0 65 64.6
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 1.5e-12 77.0 49 79.6
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 2.5e-12 76.3 61 63.9
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 3.3e-12 75.9 61 65.6
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 4.3e-12 75.5 58 69.0
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 4.3e-12 75.5 58 69.0
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 4.3e-12 75.5 58 69.0
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 4.3e-12 75.5 63 65.1
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 4.3e-12 75.5 96 55.2
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 4.3e-12 75.5 89 51.7
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 5.7e-12 75.1 65 63.1
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 5.7e-12 75.1 65 63.1
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 5.7e-12 75.1 54 68.5
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 7.4e-12 74.7 107 50.5
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 1.3e-11 73.9 58 62.1
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 1.3e-11 73.9 131 41.2
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 2.2e-11 73.2 62 62.9
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 4.8e-11 72.0 68 58.8
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 8.2e-11 71.2 54 63.0
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 9.1e-10 67.8 55 60.0
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 1.2e-09 67.4 53 62.3
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 4.5e-09 65.5 47 72.3
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 4.5e-09 65.5 47 72.3
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 1.7e-08 63.5 60 60.0
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 1.7e-08 63.5 47 70.2
Sabra14G0123800 Salix brachista HOM05D005411 ORTHO05D006463 6.5e-08 61.6 47 68.1
PGSC0003DMG402012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 1.1e-07 60.8 89 49.4
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 4.2e-07 58.9 61 57.4
Eucgr.H02258 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.6e-06 57.0 37 83.8
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 3.6e-06 55.8 49 57.1
Hund13808 Selenicereus undatus HOM05D005411 ORTHO05D006463 6.1e-06 55.1 43 67.4


User provided reference genes

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