Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.0e-54 216.5 109 100.0
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.0e-54 216.5 109 100.0
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 1.4e-48 196.1 109 88.1
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 2.5e-48 195.3 109 87.2
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 4.2e-48 194.5 109 86.2
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 4.2e-48 194.5 109 86.2
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 4.2e-48 194.5 109 86.2
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 5.5e-48 194.1 109 87.2
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 5.5e-48 194.1 109 89.0
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 7.2e-48 193.7 109 86.2
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 1.6e-47 192.6 109 88.1
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 4.7e-47 191.0 109 86.2
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 4.7e-47 191.0 109 85.3
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 6.1e-47 190.7 109 87.2
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 6.1e-47 190.7 109 87.2
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 1.0e-46 189.9 109 86.2
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 2.3e-46 188.7 109 86.2
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 3.0e-46 188.3 109 83.5
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 3.0e-46 188.3 109 84.4
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 3.0e-46 188.3 109 83.5
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 5.2e-46 187.6 109 83.5
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 6.7e-46 187.2 109 83.5
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 1.1e-45 186.4 109 79.8
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 2.6e-45 185.3 109 81.7
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 2.6e-45 185.3 109 83.5
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 5.7e-45 184.1 109 79.8
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 5.7e-45 184.1 108 82.4
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 7.4e-45 183.7 109 83.5
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 7.4e-45 183.7 109 83.5
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 7.4e-45 183.7 109 83.5
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 9.7e-45 183.3 109 82.6
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 9.7e-45 183.3 109 82.6
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.3e-44 183.0 109 81.7
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 1.7e-44 182.6 109 81.7
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 1.7e-44 182.6 109 82.6
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 1.7e-44 182.6 109 79.8
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 1.7e-44 182.6 109 82.6
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 1.7e-44 182.6 109 81.7
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 2.2e-44 182.2 109 81.7
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 2.8e-44 181.8 109 80.7
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 3.7e-44 181.4 109 78.9
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 4.8e-44 181.0 108 79.6
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 4.8e-44 181.0 109 80.7
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 4.8e-44 181.0 109 82.6
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 6.3e-44 180.6 108 79.6
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 1.1e-43 179.9 109 78.0
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 1.4e-43 179.5 109 79.8
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 1.8e-43 179.1 109 81.7
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 1.8e-43 179.1 109 80.7
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 2.4e-43 178.7 106 81.1
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 2.4e-43 178.7 108 79.6
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 4.1e-43 177.9 109 78.9
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 5.3e-43 177.6 109 80.7
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 9.1e-43 176.8 109 78.0
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 9.1e-43 176.8 109 76.1
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 2.0e-42 175.6 109 79.8
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 2.0e-42 175.6 109 78.0
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 2.0e-42 175.6 109 75.2
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 2.6e-42 175.3 109 81.7
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 2.6e-42 175.3 109 78.9
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 2.6e-42 175.3 109 78.9
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 7.7e-42 173.7 107 77.6
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 7.7e-42 173.7 109 78.9
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 1.3e-41 172.9 109 78.0
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 1.7e-41 172.6 109 78.9
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.7e-41 172.6 109 78.0
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 2.2e-41 172.2 107 76.6
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 2.2e-41 172.2 109 77.1
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 3.8e-41 171.4 109 77.1
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 3.8e-41 171.4 109 73.4
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 3.8e-41 171.4 108 74.1
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 5.0e-41 171.0 108 75.0
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 6.5e-41 170.6 109 78.0
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 6.5e-41 170.6 109 77.1
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 1.1e-40 169.9 109 78.9
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 1.5e-40 169.5 108 75.0
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 2.5e-40 168.7 107 75.7
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 2.5e-40 168.7 109 78.9
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 3.2e-40 168.3 109 76.1
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 3.2e-40 168.3 109 75.2
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 3.2e-40 168.3 107 74.8
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 4.2e-40 167.9 108 74.1
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 7.2e-40 167.2 109 76.1
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 7.2e-40 167.2 109 76.1
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 7.2e-40 167.2 109 76.1
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 7.2e-40 167.2 109 76.1
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 7.2e-40 167.2 108 73.1
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 1.6e-39 166.0 108 74.1
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 4.7e-39 164.5 109 72.5
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 4.7e-39 164.5 109 71.6
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 4.7e-39 164.5 107 73.8
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 1.5e-37 159.5 109 71.6
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.6e-37 158.7 109 69.7
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 2.6e-37 158.7 109 69.7
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 4.4e-37 157.9 108 72.2
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 4.8e-36 154.5 109 67.0
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 1.4e-35 152.9 109 68.8
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 1.8e-35 152.5 109 66.1
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 4.1e-35 151.4 109 67.9
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 9.4e-32 140.2 82 82.9
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 1.2e-31 139.8 91 76.9
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 2.1e-31 139.0 78 87.2
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 8.8e-30 133.7 107 66.4
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.5e-29 132.9 109 56.9
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 5.7e-29 131.0 96 71.9
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 2.2e-28 129.0 111 56.8
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 1.8e-27 125.9 78 78.2
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 5.4e-27 124.4 108 59.3
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 2.0e-26 122.5 111 54.1
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 2.7e-26 122.1 111 54.1
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 3.5e-26 121.7 99 62.6
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 1.0e-25 120.2 108 51.9
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 3.3e-24 115.2 111 52.3
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 9.5e-24 113.6 108 50.0
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 6.1e-23 110.9 104 48.1
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 1.0e-22 110.2 78 66.7
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 2.2e-20 102.4 108 42.6
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 4.9e-20 101.3 108 42.6
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.4e-11 72.4 49 67.3
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 1.0e-09 67.0 100 39.0
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 1.7e-09 66.2 106 34.0
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 1.1e-08 63.5 38 76.3
CAN.G473.63 Capsicum annuum HOM05D004384 ORTHO05D115006 4.0e-06 55.1 36 72.2


User provided reference genes

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