Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044593 Camellia sinensis var. sinensis HOM05D002414 ORTHO05D002531 5.7e-51 204.1 116 100.0
Actinidia02921 Actinidia chinensis HOM05D002414 ORTHO05D002531 1.7e-10 69.7 39 82.1
Dinv16252 Davidia involucrata HOM05D002414 ORTHO05D002531 3.7e-10 68.6 39 82.1
Rhsim03G0133800 Rhododendron simsii HOM05D002414 ORTHO05D002531 1.4e-09 66.6 39 74.4
Dinv26046 Davidia involucrata HOM05D002414 ORTHO05D002531 3.1e-09 65.5 39 74.4
Hma1.2p1_0039F.1_g024510 Hydrangea macrophylla HOM05D002414 ORTHO05D002531 1.6e-08 63.2 39 71.8
Hma1.2p1_0026F.1_g016280 Hydrangea macrophylla HOM05D002414 ORTHO05D002531 2.0e-08 62.8 38 76.3
GSVIVG01016481001 Vitis vinifera HOM05D002414 ORTHO05D002531 2.7e-08 62.4 39 74.4
CAN.G608.2 Capsicum annuum HOM05D002414 ORTHO05D002531 1.0e-07 60.5 38 78.9
Manes.10G026300 Manihot esculenta HOM05D002414 ORTHO05D002531 1.0e-07 60.5 40 67.5
Nitab4.5_0005829g0010 Nicotiana tabacum HOM05D002414 ORTHO05D002531 1.0e-07 60.5 38 78.9
Sopen06g017790 Solanum pennellii HOM05D002414 ORTHO05D002531 1.0e-07 60.5 38 78.9
PGSC0003DMG401023823 Solanum tuberosum HOM05D002414 ORTHO05D002531 1.0e-07 60.5 38 78.9
Migut.F00748 Erythranthe guttata HOM05D002414 ORTHO05D002531 1.3e-07 60.1 39 76.9
Migut.F00750 Erythranthe guttata HOM05D002414 ORTHO05D002531 2.3e-07 59.3 40 72.5
Lj8C79T13 Lonicera japonica HOM05D002414 ORTHO05D002531 2.3e-07 59.3 40 67.5
Oeu017562.1 Olea europaea HOM05D002414 ORTHO05D002531 2.9e-07 58.9 39 71.8
SGA_v2.0_scaffold2G01047 Striga asiatica HOM05D002414 ORTHO05D002531 2.9e-07 58.9 38 78.9
Actinidia33955 Actinidia chinensis HOM05D002414 ORTHO05D002531 3.8e-07 58.5 36 72.2
Cfa001425 Carpinus fangiana HOM05D002414 ORTHO05D002531 3.8e-07 58.5 42 66.7
Ciclev10031537m.g Citrus clementina HOM05D002414 ORTHO05D002531 3.8e-07 58.5 39 71.8
COL.COLO4_25492 Corchorus olitorius HOM05D002414 ORTHO05D002531 3.8e-07 58.5 40 67.5
Nitab4.5_0004074g0010 Nicotiana tabacum HOM05D002414 ORTHO05D002531 5.0e-07 58.2 36 80.6
SalBow5G0406 Salvia bowleyana HOM05D002414 ORTHO05D002531 5.0e-07 58.2 39 71.8
SalBow5G5569 Salvia bowleyana HOM05D002414 ORTHO05D002531 5.0e-07 58.2 39 71.8
Hund13795 Selenicereus undatus HOM05D002414 ORTHO05D002531 5.0e-07 58.2 36 75.0
Thecc.10G039300 Theobroma cacao HOM05D002414 ORTHO05D002531 5.0e-07 58.2 39 69.2
CiPaw.01G291400 Carya illinoinensis HOM05D002414 ORTHO05D002531 8.6e-07 57.4 39 66.7
Migut.F00749 Erythranthe guttata HOM05D002414 ORTHO05D002531 8.6e-07 57.4 45 66.7
CANSAT56G0766 Cannabis sativa HOM05D002414 ORTHO05D002531 1.1e-06 57.0 39 66.7
Haze_17118 Corylus avellana HOM05D002414 ORTHO05D002531 1.1e-06 57.0 42 66.7
Lj1C943T2 Lonicera japonica HOM05D002414 ORTHO05D002531 1.1e-06 57.0 39 66.7
Oeu039015.1 Olea europaea HOM05D002414 ORTHO05D002531 1.1e-06 57.0 39 71.8
Peaxi162Scf00658g00422 Petunia axillaris HOM05D002414 ORTHO05D002531 1.1e-06 57.0 38 76.3
Cc02_g07420 Coffea canephora HOM05D002414 ORTHO05D002531 1.5e-06 56.6 39 66.7
Sc11g0007710 Simmondsia chinensis HOM05D002414 ORTHO05D002531 1.5e-06 56.6 35 71.4
FAN10G1514 Fragaria x ananassa HOM05D002414 ORTHO05D002531 1.9e-06 56.2 39 66.7
FAN10G3047 Fragaria x ananassa HOM05D002414 ORTHO05D002531 1.9e-06 56.2 39 66.7
Phvul.001G236100 Phaseolus vulgaris HOM05D002414 ORTHO05D002531 1.9e-06 56.2 36 72.2
QL08p061332 Quercus lobata HOM05D002414 ORTHO05D002531 1.9e-06 56.2 42 59.5
arahy.Tifrunner.gnm1.ann1.8S2BPT Arachis hypogaea HOM05D002414 ORTHO05D002531 2.5e-06 55.8 39 66.7
arahy.Tifrunner.gnm1.ann1.AGZ93U Arachis hypogaea HOM05D002414 ORTHO05D002531 2.5e-06 55.8 39 66.7
Duzib106G1475 Durio zibethinus HOM05D002414 ORTHO05D002531 2.5e-06 55.8 39 64.1
Eucgr.G02961 Eucalyptus grandis HOM05D002414 ORTHO05D002531 2.5e-06 55.8 40 67.5
FvH4_7g23071 Fragaria vesca HOM05D002414 ORTHO05D002531 3.3e-06 55.5 39 64.1
FAN01G1411 Fragaria x ananassa HOM05D002414 ORTHO05D002531 3.3e-06 55.5 39 64.1
FAN03G1385 Fragaria x ananassa HOM05D002414 ORTHO05D002531 3.3e-06 55.5 39 64.1
FAN06G1258 Fragaria x ananassa HOM05D002414 ORTHO05D002531 3.3e-06 55.5 39 64.1
RcHm_v2.0_Chr1g0368311 Rosa chinensis HOM05D002414 ORTHO05D002531 3.3e-06 55.5 39 64.1
MSTRG.27366 Avicennia marina HOM05D002414 ORTHO05D002531 4.2e-06 55.1 36 72.2
EL10Ac2g04700 Beta vulgaris HOM05D002414 ORTHO05D002531 4.2e-06 55.1 39 64.1
CiPaw.02G186500 Carya illinoinensis HOM05D002414 ORTHO05D002531 4.2e-06 55.1 39 64.1
AUR62040698 Chenopodium quinoa HOM05D002414 ORTHO05D002531 5.5e-06 54.7 39 64.1
PGR142G0412 Punica granatum HOM05D002414 ORTHO05D002531 5.5e-06 54.7 39 64.1
TAR623G1792 Trochodendron aralioides HOM05D002414 ORTHO05D002531 5.5e-06 54.7 37 70.3
VMungo1383G2026 Vigna mungo HOM05D002414 ORTHO05D002531 5.5e-06 54.7 37 67.6
Lj2g0015546 Lotus japonicus HOM05D002414 ORTHO05D002531 7.2e-06 54.3 39 64.1
AUR62012137 Chenopodium quinoa HOM05D002414 ORTHO05D002531 9.5e-06 53.9 39 61.5


User provided reference genes

Program Settings