Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 3.1e-87 325.1 164 100.0
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 3.1e-87 325.1 164 100.0
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.4e-84 316.2 164 98.2
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 3.7e-72 275.0 164 80.5
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 4.8e-72 274.6 164 81.7
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 8.2e-72 273.9 164 81.1
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 1.4e-71 273.1 164 80.5
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 1.8e-71 272.7 164 81.1
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 1.8e-71 272.7 164 79.9
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 2.4e-71 272.3 164 82.3
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 3.1e-71 271.9 164 81.1
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 5.3e-71 271.2 164 79.9
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 7.0e-71 270.8 164 80.5
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 1.6e-70 269.6 164 78.0
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 2.6e-70 268.9 164 78.7
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 3.5e-70 268.5 164 79.9
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 7.7e-70 267.3 164 78.7
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 8.5e-69 263.8 164 78.0
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 8.5e-69 263.8 164 76.8
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 1.5e-68 263.1 164 76.8
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 1.5e-68 263.1 164 74.4
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 2.5e-68 262.3 164 78.0
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 3.2e-68 261.9 164 79.3
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 4.2e-68 261.5 164 78.7
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 4.2e-68 261.5 164 79.3
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 9.4e-68 260.4 164 77.4
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 1.2e-67 260.0 164 78.7
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 3.6e-67 258.5 164 76.8
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 3.6e-67 258.5 164 79.9
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 6.1e-67 257.7 164 78.0
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 6.1e-67 257.7 164 78.7
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 8.0e-67 257.3 164 78.7
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 8.0e-67 257.3 164 78.7
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 1.0e-66 256.9 164 77.4
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.0e-66 256.9 166 76.5
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 1.8e-66 256.1 164 72.6
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 1.8e-66 256.1 164 78.0
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 2.3e-66 255.8 164 76.8
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 3.0e-66 255.4 164 75.0
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 3.0e-66 255.4 188 70.7
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 3.0e-66 255.4 164 76.8
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 4.0e-66 255.0 164 76.2
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 4.0e-66 255.0 164 76.8
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 4.0e-66 255.0 164 76.8
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 4.0e-66 255.0 162 75.3
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 5.2e-66 254.6 164 77.4
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 6.7e-66 254.2 166 75.3
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 6.7e-66 254.2 164 76.2
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 6.7e-66 254.2 164 73.8
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 8.8e-66 253.8 164 75.0
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 1.2e-65 253.4 164 75.6
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 2.0e-65 252.7 164 78.0
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 2.0e-65 252.7 164 74.4
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 3.3e-65 251.9 166 74.1
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 5.7e-65 251.1 156 77.6
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 7.5e-65 250.8 164 73.2
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 7.5e-65 250.8 164 74.4
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 9.7e-65 250.4 164 73.8
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 9.7e-65 250.4 164 77.4
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 9.7e-65 250.4 164 74.4
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 1.3e-64 250.0 164 73.2
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 2.2e-64 249.2 164 73.2
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 2.2e-64 249.2 164 74.4
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 2.2e-64 249.2 164 72.0
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 2.8e-64 248.8 164 75.6
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 2.8e-64 248.8 164 74.4
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 3.7e-64 248.4 164 75.0
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 3.7e-64 248.4 164 72.0
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 3.7e-64 248.4 164 74.4
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 4.8e-64 248.1 164 72.6
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 4.8e-64 248.1 164 73.8
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 4.8e-64 248.1 164 71.3
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 6.3e-64 247.7 164 72.6
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 6.3e-64 247.7 164 72.6
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 1.1e-63 246.9 164 72.0
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 1.8e-63 246.1 164 71.3
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 71.3
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 73.2
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 74.4
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 4.1e-63 245.0 164 71.3
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 4.1e-63 245.0 164 73.2
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 70.7
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 71.3
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 2.0e-62 242.7 164 70.1
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 2.7e-62 242.3 164 72.0
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 3.5e-62 241.9 164 71.3
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 7.7e-62 240.7 164 69.5
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 7.7e-62 240.7 164 69.5
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.0e-61 240.4 157 73.9
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 1.3e-61 240.0 164 68.9
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 1.3e-61 240.0 164 68.9
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.7e-61 239.6 164 70.1
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 69.5
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 1.6e-59 233.0 158 72.2
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 2.1e-59 232.6 164 66.5
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 3.6e-59 231.9 164 68.3
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 5.2e-58 228.0 174 66.7
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 6.8e-58 227.6 173 64.2
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 6.8e-58 227.6 193 60.1
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 2.0e-57 226.1 185 61.1
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 3.4e-57 225.3 164 68.9
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 5.7e-57 224.6 191 58.6
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 2.2e-56 222.6 164 64.0
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 3.7e-56 221.9 171 64.9
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 6.3e-56 221.1 164 66.5
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 1.6e-54 216.5 162 62.3
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 3.0e-50 202.2 133 72.9
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 2.2e-48 196.1 170 58.8
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 2.2e-48 196.1 170 58.8
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 4.1e-47 191.8 164 54.9
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 9.2e-47 190.7 164 61.6
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 2.7e-46 189.1 221 51.1
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 3.8e-45 185.3 165 60.6
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 5.0e-45 184.9 132 67.4
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 4.0e-42 175.3 167 55.7
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 7.0e-39 164.5 168 48.2
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 2.7e-38 162.5 117 70.1
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 3.9e-37 158.7 92 85.9
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 1.2e-35 153.7 169 45.0
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 1.2e-35 153.7 168 48.8
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 6.2e-35 151.4 82 90.2
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 3.1e-34 149.1 98 79.6
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 5.8e-33 144.8 83 85.5
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 1.4e-31 140.2 121 50.4
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 1.6e-30 136.7 82 79.3
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 2.7e-30 136.0 165 46.7
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 6.0e-30 134.8 84 78.6
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 1.7e-29 133.3 97 63.9
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 5.0e-29 131.7 91 75.8
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 2.2e-24 116.3 104 62.5
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 1.4e-23 113.6 118 49.2
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 1.9e-23 113.2 66 80.3
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 2.7e-22 109.4 69 75.4
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 1.6e-19 100.1 87 57.5
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 1.2e-17 94.0 119 37.0
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 4.4e-17 92.0 47 87.2
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 5.4e-15 85.1 57 59.6
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 9.2e-15 84.3 46 82.6
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 3.5e-14 82.4 46 82.6
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 3.5e-14 82.4 68 66.2
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 1.1e-12 77.4 48 75.0
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 7.3e-12 74.7 46 69.6
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 3.6e-11 72.4 76 53.9
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 3.1e-10 69.3 82 50.0
BraA09t38755Z Brassica rapa HOM05D005137 ORTHO05D006478 9.3e-07 57.8 32 81.2


User provided reference genes

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