Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 2.7e-80 302.0 157 100.0
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.3e-77 293.1 159 98.1
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 3.3e-46 188.7 148 71.6
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.7e-45 186.4 157 66.9
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 9.7e-38 160.6 157 58.6
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 2.2e-37 159.5 157 56.7
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 9.1e-36 154.1 156 55.8
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 2.6e-35 152.5 157 58.0
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.7e-34 149.8 139 58.3
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.7e-34 149.8 139 58.3
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 5.0e-34 148.3 146 58.2
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 1.1e-33 147.1 142 57.7
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 3.2e-33 145.6 151 55.0
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 5.5e-33 144.8 157 55.4
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.0e-31 140.6 142 54.9
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 8.8e-31 137.5 157 54.8
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 1.2e-30 137.1 151 51.7
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.5e-30 136.7 142 54.2
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.5e-30 136.7 142 54.2
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.0e-30 136.3 142 52.1
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 3.3e-30 135.6 157 54.8
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 3.3e-30 135.6 142 51.4
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 5.7e-30 134.8 143 56.6
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 1.3e-29 133.7 148 53.4
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 1.7e-29 133.3 156 53.2
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 3.7e-29 132.1 142 52.1
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 3.7e-29 132.1 142 52.1
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 4.8e-29 131.7 157 50.3
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 6.3e-29 131.3 150 50.0
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 6.3e-29 131.3 142 50.0
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.4e-28 130.2 119 61.3
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.8e-28 129.8 148 49.3
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 1.8e-28 129.8 147 49.7
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.4e-28 129.4 148 48.0
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 3.1e-28 129.0 142 49.3
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 4.1e-28 128.6 148 52.0
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 9.1e-28 127.5 148 47.3
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.6e-27 126.7 142 49.3
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 2.0e-27 126.3 157 51.0
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 3.5e-27 125.6 142 50.7
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 3.5e-27 125.6 142 47.9
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 4.5e-27 125.2 141 46.1
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 4.5e-27 125.2 144 48.6
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 7.7e-27 124.4 157 50.3
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 1.3e-26 123.6 157 50.3
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 2.2e-26 122.9 160 49.4
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 3.8e-26 122.1 143 49.0
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 6.5e-26 121.3 141 46.8
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.1e-25 120.6 144 46.5
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.1e-25 120.6 144 46.5
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 1.5e-25 120.2 138 54.3
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 1.9e-25 119.8 142 50.7
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 2.5e-25 119.4 164 42.7
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 2.5e-25 119.4 123 51.2
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 5.5e-25 118.2 138 50.7
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 7.2e-25 117.9 124 55.6
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 1.2e-24 117.1 142 49.3
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.2e-24 117.1 144 48.6
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 1.2e-24 117.1 148 45.9
Actinidia30825 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.6e-24 116.7 100 68.0
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.6e-24 116.7 144 48.6
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.6e-24 116.7 144 49.3
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 1.6e-24 116.7 144 45.8
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 1.6e-24 116.7 144 46.5
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 1.6e-24 116.7 144 46.5
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 2.1e-24 116.3 120 52.5
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 4.7e-24 115.2 145 45.5
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 4.7e-24 115.2 143 51.0
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 6.1e-24 114.8 144 48.6
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 1.0e-23 114.0 143 50.3
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.0e-23 114.0 141 45.4
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 1.8e-23 113.2 143 49.7
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 3.0e-23 112.5 137 46.0
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 2.6e-22 109.4 139 44.6
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 5.7e-22 108.2 120 50.0
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 5.7e-22 108.2 142 46.5
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 7.5e-22 107.8 146 43.8
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 9.8e-22 107.5 142 46.5
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 4.8e-21 105.1 147 49.0
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 4.8e-21 105.1 150 47.3
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 8.3e-21 104.4 142 47.2
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 8.3e-21 104.4 139 46.0
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 8.3e-21 104.4 137 46.7
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 8.3e-21 104.4 137 43.8
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 1.1e-20 104.0 121 50.4
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 1.1e-20 104.0 140 47.9
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 1.4e-20 103.6 133 47.4
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 2.4e-20 102.8 140 47.1
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 2.4e-20 102.8 164 43.3
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 7.0e-20 101.3 128 49.2
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 9.1e-20 100.9 141 44.7
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 1.2e-19 100.5 150 42.0
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 2.0e-19 99.8 154 45.5
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 2.0e-19 99.8 142 47.2
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 7.7e-19 97.8 150 44.7
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 1.0e-18 97.4 144 43.1
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 1.3e-18 97.1 152 40.1
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 2.3e-18 96.3 148 44.6
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 3.8e-18 95.5 151 44.4
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 5.0e-18 95.1 145 41.4
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 6.5e-18 94.7 137 43.8
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.1e-17 94.0 149 42.3
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 1.9e-17 93.2 171 40.4
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 2.5e-17 92.8 121 42.1
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 2.5e-17 92.8 146 46.6
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 7.2e-17 91.3 149 43.6
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 3.6e-16 89.0 150 41.3
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 8.0e-16 87.8 139 43.2
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 8.0e-16 87.8 141 41.1
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 2.3e-15 86.3 145 40.7
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 3.0e-15 85.9 109 45.0
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 6.8e-15 84.7 139 41.7
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 1.5e-14 83.6 163 36.8
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 2.0e-14 83.2 107 50.5
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 3.4e-14 82.4 106 45.3
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 3.4e-14 82.4 106 45.3
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 3.4e-14 82.4 107 50.5
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 3.4e-14 82.4 106 46.2
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 3.4e-14 82.4 150 40.7
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 5.7e-14 81.6 121 44.6
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 9.8e-14 80.9 66 66.7
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 2.2e-13 79.7 142 38.7
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 2.2e-13 79.7 164 34.8
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 2.8e-13 79.3 112 46.4
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 4.9e-13 78.6 142 41.5
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 6.3e-13 78.2 139 40.3
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 8.3e-13 77.8 143 36.4
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 2.4e-12 76.3 165 36.4
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 4.1e-12 75.5 140 35.7
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 7.0e-12 74.7 143 35.7
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 7.0e-12 74.7 142 37.3
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 7.0e-12 74.7 114 46.5
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 9.2e-12 74.3 143 37.8
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 2.7e-11 72.8 140 35.7
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 4.5e-11 72.0 140 35.7
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 4.5e-11 72.0 140 35.7
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 5.9e-11 71.6 144 36.1
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 7.8e-11 71.2 140 35.0
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 7.8e-11 71.2 141 35.5
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 1.0e-10 70.9 142 35.2
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.0e-10 70.9 141 36.2
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 1.0e-10 70.9 127 38.6
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 2.3e-10 69.7 139 34.5
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 2.9e-10 69.3 153 33.3
SMO348G0043 Selaginella moellendorffii HOM05D004108 ORTHO05D004849 3.8e-10 68.9 155 36.8
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 5.0e-10 68.6 147 34.7
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 8.6e-10 67.8 99 46.5
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 1.1e-09 67.4 141 36.2
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.5e-09 67.0 137 35.8
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 2.5e-09 66.2 140 35.7
PGSC0003DMG400005376 Solanum tuberosum HOM05D004108 ORTHO05D004849 7.3e-09 64.7 139 33.1
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.2e-08 63.9 144 33.3
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.2e-08 63.9 136 35.3
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 2.1e-08 63.2 150 35.3
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 2.8e-08 62.8 149 37.6
Actinidia29817 Actinidia chinensis HOM05D004108 ORTHO05D004849 4.7e-08 62.0 40 70.0
unitig_747.g21673 Utricularia gibba HOM05D004108 ORTHO05D004849 1.0e-07 60.8 140 34.3
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.8e-07 60.1 155 31.0
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.0e-07 58.9 159 32.7
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 5.2e-07 58.5 68 50.0
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.2e-07 58.5 142 33.1
Nitab4.5_0004768g0030 Nicotiana tabacum HOM05D004108 ORTHO05D004849 8.9e-07 57.8 108 43.5
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 1.2e-06 57.4 137 32.8
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.6e-06 56.2 141 33.3


User provided reference genes

Program Settings