Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 1.1e-145 520.0 279 100.0
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 7.3e-137 490.7 281 95.4
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 7.1e-100 367.9 288 73.3
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 7.6e-94 347.8 291 71.5
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 7.6e-94 347.8 291 71.5
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 1.3e-93 347.1 286 72.4
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 2.9e-93 345.9 281 71.5
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 3.8e-93 345.5 281 70.8
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 6.5e-93 344.7 287 70.0
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.3e-90 337.0 280 70.4
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 1.3e-90 337.0 280 70.4
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 3.0e-90 335.9 280 70.0
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 1.9e-89 333.2 281 69.4
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 2.8e-88 329.3 283 68.9
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 6.3e-88 328.2 286 67.5
Cpa.g.sc46.177 Carica papaya HOM05D004690 ORTHO05D005527 1.8e-87 326.6 283 67.1
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 3.1e-87 325.9 282 66.3
CiPaw.15G165900 Carya illinoinensis HOM05D004690 ORTHO05D005527 5.3e-87 325.1 264 70.8
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 5.3e-87 325.1 288 66.3
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 9.0e-87 324.3 286 67.1
CiPaw.16G107700 Carya illinoinensis HOM05D004690 ORTHO05D005527 3.8e-85 318.9 286 67.1
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 6.5e-85 318.2 280 66.1
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 2.5e-84 316.2 283 65.0
Eucgr.C02505 Eucalyptus grandis HOM05D004690 ORTHO05D005527 3.2e-84 315.8 295 63.4
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 4.6e-83 312.0 280 65.4
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 6.1e-83 311.6 280 65.4
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 1.0e-82 310.8 283 66.4
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 1.3e-82 310.5 284 65.1
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 3.0e-82 309.3 280 62.1
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 3.9e-82 308.9 282 64.2
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 6.7e-82 308.1 283 65.7
Hma1.2p1_0222F.1_g093770 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 3.3e-81 305.8 301 63.5
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 3.3e-81 305.8 300 61.7
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 5.7e-81 305.1 310 61.3
CANSAT11G0185 Cannabis sativa HOM05D004690 ORTHO05D005527 2.8e-80 302.8 292 62.7
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 4.8e-80 302.0 304 62.2
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 6.3e-80 301.6 278 60.8
Haze_19160 Corylus avellana HOM05D004690 ORTHO05D005527 2.4e-79 299.7 318 58.2
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 3.1e-79 299.3 284 62.0
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 6.9e-79 298.1 281 61.6
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 2.6e-78 296.2 275 61.8
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 3.4e-78 295.8 290 62.1
SGA_v2.0_scaffold63G21785 Striga asiatica HOM05D004690 ORTHO05D005527 4.5e-78 295.4 295 59.0
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 2.2e-77 293.1 284 63.4
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 2.2e-77 293.1 284 63.4
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 3.8e-77 292.4 283 60.4
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 3.8e-77 292.4 283 62.5
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 2.1e-75 286.6 283 61.8
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 2.1e-75 286.6 263 64.3
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 2.7e-75 286.2 279 63.8
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 2.7e-75 286.2 279 63.1
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 6.1e-75 285.0 283 60.8
Sp4g02970 Schrenkiella parvula HOM05D004690 ORTHO05D005527 6.1e-75 285.0 282 59.9
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 7.9e-75 284.6 279 60.2
Carub.0004s0323 Capsella rubella HOM05D004690 ORTHO05D005527 1.0e-74 284.3 278 59.0
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 1.0e-74 284.3 283 61.8
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 1.4e-74 283.9 275 60.0
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 1.8e-74 283.5 344 55.2
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 2.3e-74 283.1 277 61.7
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 2.3e-74 283.1 280 60.4
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 5.1e-74 282.0 264 61.7
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 8.8e-74 281.2 278 60.4
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 1.1e-73 280.8 279 60.9
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 1.5e-73 280.4 276 59.8
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 1.5e-73 280.4 279 60.9
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 1.5e-73 280.4 279 60.9
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 1.5e-73 280.4 279 60.9
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 2.0e-73 280.0 284 60.6
Atru.chr7.16 Acer truncatum HOM05D004690 ORTHO05D005527 2.6e-73 279.6 217 73.3
Potri.006G182000 Populus trichocarpa HOM05D004690 ORTHO05D005527 7.4e-73 278.1 223 72.2
Sabra18G0089400 Salix brachista HOM05D004690 ORTHO05D005527 9.7e-73 277.7 284 59.9
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 9.7e-73 277.7 284 62.3
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 1.3e-72 277.3 229 70.7
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 3.7e-72 275.8 279 59.5
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 3.7e-72 275.8 277 59.6
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 6.3e-72 275.0 268 61.9
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 1.1e-71 274.2 277 59.2
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 3.1e-71 272.7 267 61.4
Lsat_1_v5_gn_8_63881 Lactuca sativa HOM05D004690 ORTHO05D005527 3.1e-71 272.7 215 69.8
ClCG02G014380 Citrullus lanatus HOM05D004690 ORTHO05D005527 6.9e-71 271.6 304 56.2
MELO3C004125.2 Cucumis melo HOM05D004690 ORTHO05D005527 9.1e-71 271.2 305 56.7
Aa31LG7G12770 Aethionema arabicum HOM05D004690 ORTHO05D005527 2.0e-70 270.0 283 56.5
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 3.4e-70 269.2 199 72.9
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 3.4e-70 269.2 252 64.3
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 3.4e-70 269.2 296 58.1
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 1.0e-69 267.7 285 58.6
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 1.3e-69 267.3 288 57.6
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 3.8e-69 265.8 278 59.0
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 5.0e-69 265.4 276 59.4
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 5.0e-69 265.4 279 57.3
ATR0019G027 Amborella trichopoda HOM05D004690 ORTHO05D005527 6.5e-69 265.0 259 61.8
Ah.09g228780 Amaranthus hybridus HOM05D004690 ORTHO05D005527 1.4e-68 263.8 297 56.6
Cc06_g14700 Coffea canephora HOM05D004690 ORTHO05D005527 1.9e-68 263.5 283 57.2
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 1.9e-68 263.5 279 57.0
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 3.2e-68 262.7 257 61.1
FAN28G2863 Fragaria x ananassa HOM05D004690 ORTHO05D005527 4.2e-68 262.3 279 56.6
FAN23G2407 Fragaria x ananassa HOM05D004690 ORTHO05D005527 5.5e-68 261.9 280 57.1
FAN23G2925 Fragaria x ananassa HOM05D004690 ORTHO05D005527 5.5e-68 261.9 280 57.1
QL02p093831 Quercus lobata HOM05D004690 ORTHO05D005527 5.5e-68 261.9 241 66.0
Oeu054265.1 Olea europaea HOM05D004690 ORTHO05D005527 7.2e-68 261.5 151 89.4
unitig_899.g15465 Utricularia gibba HOM05D004690 ORTHO05D005527 1.2e-67 260.8 283 58.0
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 2.1e-67 260.0 265 59.2
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 3.6e-67 259.2 229 65.5
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 6.1e-67 258.5 181 74.0
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 1.5e-65 253.8 171 78.4
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 2.0e-65 253.4 215 66.0
Sc18g0003050 Simmondsia chinensis HOM05D004690 ORTHO05D005527 2.6e-65 253.1 300 56.7
MBI15_g27186_MAGBIO Magnolia biondii HOM05D004690 ORTHO05D005527 6.3e-64 248.4 283 58.3
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 2.6e-62 243.0 244 57.0
EL10Ac8g18927 Beta vulgaris HOM05D004690 ORTHO05D005527 3.8e-61 239.2 300 52.0
CAN.G160.27 Capsicum annuum HOM05D004690 ORTHO05D005527 2.5e-60 236.5 171 74.9
Lj7C462G3 Lonicera japonica HOM05D000062 ORTHO05D000043 2.7e-59 233.0 206 62.1
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 1.4e-58 230.7 257 57.2
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 6.7e-58 228.4 294 51.0
AUR62028351 Chenopodium quinoa HOM05D004690 ORTHO05D005527 2.6e-57 226.5 290 51.7
AUR62025348 Chenopodium quinoa HOM05D004690 ORTHO05D005527 3.3e-57 226.1 292 51.0
Zm00001eb257720 Zea mays HOM05D004690 ORTHO05D005527 2.2e-56 223.4 186 65.6
HPP92_018341 Vanilla planifolia HOM05D004690 ORTHO05D005527 1.8e-55 220.3 227 57.3
Duzib150G0069 Durio zibethinus HOM05D004690 ORTHO05D005527 2.4e-55 219.9 279 53.8
CDE05G2888 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 5.9e-54 215.3 187 64.2
Nn8g39977 Nelumbo nucifera HOM05D004690 ORTHO05D005527 3.6e-51 206.1 136 79.4
Os02g0794400 Oryza sativa ssp. japonica HOM05D004690 ORTHO05D005527 4.4e-49 199.1 183 59.0
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 1.3e-45 187.6 210 53.8
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.9e-44 183.7 221 51.6
Manes.06G030800 Manihot esculenta HOM05D004690 ORTHO05D005527 6.8e-42 175.3 109 82.6
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.2e-41 174.5 229 49.8
Actinidia38313 Actinidia chinensis HOM05D004690 ORTHO05D005527 1.5e-41 174.1 238 52.5
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 5.7e-41 172.2 203 50.7
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 2.2e-40 170.2 200 50.5
Aa31LG3G8690 Aethionema arabicum HOM05D004690 ORTHO05D005527 9.2e-39 164.9 111 73.9
Ca_21146_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 9.2e-39 164.9 104 78.8
Actinidia24377 Actinidia chinensis HOM05D004690 ORTHO05D005527 1.9e-36 157.1 104 80.8
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 4.7e-35 152.5 271 37.6
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 3.0e-34 149.8 179 47.5
Hma1.2p1_0028F.1_g017670 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 8.3e-32 141.7 158 58.2
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 5.0e-29 132.5 178 41.6
Carub.0007s0984 Capsella rubella HOM05D004690 ORTHO05D005527 9.5e-28 128.3 174 50.6
PGSC0003DMG400017027 Solanum tuberosum HOM05D004690 ORTHO05D005527 1.5e-25 120.9 66 89.4
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 3.4e-25 119.8 91 67.0
SEGI_13735 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 3.4e-25 119.8 132 48.5
Nn8g39976 Nelumbo nucifera HOM05D004690 ORTHO05D005527 1.0e-21 108.2 145 53.1
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 3.0e-21 106.7 157 37.6
HanXRQChr10g0314901 Helianthus annuus HOM05D000214 ORTHO05D000131 1.9e-20 104.0 82 70.7
Cre01.g001550 Chlamydomonas reinhardtii HOM05D004690 ORTHO05D005527 2.6e-17 93.6 145 34.5
Dinv41359 Davidia involucrata HOM05D004690 ORTHO05D005527 2.4e-15 87.0 80 70.0
BcaB06g27963 Brassica carinata HOM05D004690 ORTHO05D005527 1.2e-14 84.7 78 59.0
Actinidia24378 Actinidia chinensis HOM05D004690 ORTHO05D005527 1.5e-12 77.8 97 56.7
SEGI_33455 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 1.6e-11 74.3 141 41.8
Ca_21142_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 1.8e-10 70.9 131 46.6
FAN23G1872 Fragaria x ananassa HOM05D004690 ORTHO05D005527 4.0e-10 69.7 134 42.5
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 3.4e-09 66.6 128 35.9
A02p43620 Brassica napus HOM05D004690 ORTHO05D005527 9.9e-09 65.1 51 64.7
A02p43630 Brassica napus HOM05D004690 ORTHO05D005527 9.9e-09 65.1 51 64.7
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 4.9e-08 62.8 183 29.0
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 6.4e-08 62.4 148 33.1
Oeu054266.1 Olea europaea HOM05D004690 ORTHO05D005527 6.4e-08 62.4 133 44.4
Medtr7g017820 Medicago truncatula HOM05D004690 ORTHO05D005527 1.4e-07 61.2 33 87.9
BolC2t11481H Brassica oleracea HOM05D004690 ORTHO05D005527 1.9e-07 60.8 45 68.9
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 1.9e-07 60.8 187 28.9
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 1.9e-07 60.8 113 32.7
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.9e-07 60.8 113 32.7
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.9e-07 60.8 113 32.7
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 3.2e-07 60.1 138 33.3
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 5.4e-07 59.3 113 31.9
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 5.4e-07 59.3 113 31.0
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 7.1e-07 58.9 111 35.1
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 7.1e-07 58.9 170 30.0
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 9.2e-07 58.5 213 25.8
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 9.2e-07 58.5 129 30.2
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 1.2e-06 58.2 187 26.2
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 1.6e-06 57.8 177 27.7
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 2.1e-06 57.4 188 26.6
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 2.7e-06 57.0 209 24.4
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 3.5e-06 56.6 112 31.2
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 3.5e-06 56.6 209 25.4
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 6.0e-06 55.8 183 27.9
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 7.8e-06 55.5 198 29.3
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 7.8e-06 55.5 112 31.2
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 7.8e-06 55.5 183 27.3


User provided reference genes

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