Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044561 Camellia sinensis var. sinensis HOM05D031489 ORTHO05D109581 2.0e-32 141.7 66 100.0
CSS0035738 Camellia sinensis var. sinensis HOM05D031489 ORTHO05D109079 5.7e-32 140.2 66 98.5
CSS0025247 Camellia sinensis var. sinensis HOM05D031489 ORTHO05D111148 2.7e-29 131.3 66 92.4
CSS0031683 Camellia sinensis var. sinensis HOM05D031489 ORTHO05D111031 1.6e-26 122.1 61 93.4
CSS0008975 Camellia sinensis var. sinensis HOM05D000066 ORTHO05D013818 2.0e-16 88.6 42 95.2
CSS0047111 Camellia sinensis var. sinensis HOM05D000066 ORTHO05D013818 4.4e-16 87.4 43 90.7
CSS0019000 Camellia sinensis var. sinensis HOM05D000066 ORTHO05D013818 5.7e-16 87.0 43 88.4
CSS0002994 Camellia sinensis var. sinensis HOM05D000066 ORTHO05D013818 1.7e-15 85.5 42 92.9
CSS0010404 Camellia sinensis var. sinensis HOM05D000066 ORTHO05D013818 1.7e-15 85.5 42 90.5
CSS0043136 Camellia sinensis var. sinensis HOM05D000066 ORTHO05D000055 2.3e-12 75.1 35 97.1
CSS0044532 Camellia sinensis var. sinensis HOM05D000066 ORTHO05D000055 5.0e-12 73.9 35 94.3
Dinv38219 Davidia involucrata HOM05D000066 ORTHO05D000055 1.7e-07 58.9 37 67.6
SalBow3G1875 Salvia bowleyana HOM05D000066 ORTHO05D000055 2.2e-07 58.5 37 70.3
AL9U11190 Arabidopsis lyrata HOM05D000066 ORTHO05D000055 3.7e-07 57.8 40 62.5
Manes.03G146800 Manihot esculenta HOM05D000066 ORTHO05D000055 3.7e-07 57.8 37 64.9
Nitab4.5_0002641g0150 Nicotiana tabacum HOM05D000066 ORTHO05D000055 6.4e-07 57.0 35 74.3
Phvul.008G129100 Phaseolus vulgaris HOM05D000066 ORTHO05D000055 6.4e-07 57.0 39 61.5
TPR.G31306 Trifolium pratense HOM05D000066 ORTHO05D000055 6.4e-07 57.0 39 61.5
Duzib138G1149 Durio zibethinus HOM05D000066 ORTHO05D000055 8.3e-07 56.6 37 64.9
Manes.13G046500 Manihot esculenta HOM05D000066 ORTHO05D000055 8.3e-07 56.6 35 68.6
Duzib138G0362 Durio zibethinus HOM05D000066 ORTHO05D000055 1.1e-06 56.2 37 64.9
Hma1.2p1_0187F.1_g082330 Hydrangea macrophylla HOM05D000066 ORTHO05D000055 1.1e-06 56.2 37 64.9
Hma1.2p1_0978F.1_g243360 Hydrangea macrophylla HOM05D000066 ORTHO05D013818 1.1e-06 56.2 37 64.9
Medtr7g056090 Medicago truncatula HOM05D000066 ORTHO05D000055 1.1e-06 56.2 42 64.3
Nitab4.5_0002616g0010 Nicotiana tabacum HOM05D000066 ORTHO05D013818 1.1e-06 56.2 35 71.4
TAR636G0196 Trochodendron aralioides HOM05D000066 ORTHO05D000055 1.1e-06 56.2 37 64.9
CiPaw.03G147800 Carya illinoinensis HOM05D000066 ORTHO05D000055 1.9e-06 55.5 37 62.2
Dinv12668 Davidia involucrata HOM05D000066 ORTHO05D000055 1.9e-06 55.5 37 64.9
Ciclev10023425m.g Citrus clementina HOM05D000066 ORTHO05D000055 2.4e-06 55.1 37 62.2
COL.COLO4_15656 Corchorus olitorius HOM05D000066 ORTHO05D000055 2.4e-06 55.1 37 62.2
Nitab4.5_0002260g0220 Nicotiana tabacum HOM05D000066 ORTHO05D000055 2.4e-06 55.1 37 64.9
TAR365G0393 Trochodendron aralioides HOM05D000066 ORTHO05D000055 2.4e-06 55.1 37 62.2
arahy.Tifrunner.gnm1.ann1.JZ1BNU Arachis hypogaea HOM05D000066 ORTHO05D000055 3.2e-06 54.7 44 52.3
Cpa.g.sc8.136 Carica papaya HOM05D000066 ORTHO05D000055 3.2e-06 54.7 35 65.7
Cfa002584 Carpinus fangiana HOM05D000066 ORTHO05D000055 3.2e-06 54.7 37 59.5
Medtr8g013055 Medicago truncatula HOM05D000066 ORTHO05D000055 3.2e-06 54.7 40 57.5
VMungo1383G1703 Vigna mungo HOM05D000066 ORTHO05D000055 3.2e-06 54.7 42 54.8
Actinidia30065 Actinidia chinensis HOM05D000066 ORTHO05D000055 4.1e-06 54.3 37 64.9
AT4G13090 Arabidopsis thaliana HOM05D000066 ORTHO05D000055 4.1e-06 54.3 40 60.0
CARHR218520 Cardamine hirsuta HOM05D000066 ORTHO05D000055 4.1e-06 54.3 40 60.0
Gohir.D08G212642 Gossypium hirsutum HOM05D000066 ORTHO05D000055 4.1e-06 54.3 50 52.0
HanXRQChr07g0193441 Helianthus annuus HOM05D000066 ORTHO05D000055 4.1e-06 54.3 35 71.4
Lj3g0018081 Lotus japonicus HOM05D000066 ORTHO05D000055 4.1e-06 54.3 44 54.5
Lj3g0021766 Lotus japonicus HOM05D000066 ORTHO05D000055 4.1e-06 54.3 44 52.3
Potri.002G244200 Populus trichocarpa HOM05D000066 ORTHO05D000055 4.1e-06 54.3 40 60.0
AL9U11084 Arabidopsis lyrata HOM05D000066 ORTHO05D000055 5.4e-06 53.9 37 64.9
Lsat_1_v5_gn_9_12461 Lactuca sativa HOM05D000066 ORTHO05D000055 5.4e-06 53.9 35 65.7
Nitab4.5_0003502g0060 Nicotiana tabacum HOM05D000066 ORTHO05D000055 5.4e-06 53.9 37 62.2
GSVIVG01003280001 Vitis vinifera HOM05D000066 ORTHO05D000055 5.4e-06 53.9 37 62.2
Lj3g0021150 Lotus japonicus HOM05D000066 ORTHO05D000055 7.0e-06 53.5 44 54.5
Sabra02G0185800 Salix brachista HOM05D000066 ORTHO05D000055 7.0e-06 53.5 37 62.2
Carub.0007s2966 Capsella rubella HOM05D000066 ORTHO05D000055 9.2e-06 53.1 37 59.5
Thhalv10026812m.g Eutrema salsugineum HOM05D000066 ORTHO05D000055 9.2e-06 53.1 37 64.9
Thecc.01G223100 Theobroma cacao HOM05D000066 ORTHO05D000055 9.2e-06 53.1 37 62.2
TPR.G17132 Trifolium pratense HOM05D000066 ORTHO05D000055 9.2e-06 53.1 38 57.9


User provided reference genes

Program Settings