Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044553 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 1.3e-160 569.7 289 100.0
CSS0031703 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 1.6e-91 340.1 292 69.5
CSS0042031 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 1.6e-91 340.1 292 69.5
Actinidia13669 Actinidia chinensis HOM05D005032 ORTHO05D006268 5.0e-88 328.6 292 67.1
Rhsim12G0082300 Rhododendron simsii HOM05D005032 ORTHO05D006268 4.2e-87 325.5 292 65.8
vmacro01369 Vaccinium macrocarpon HOM05D005032 ORTHO05D006268 1.4e-85 320.5 292 65.1
Dinv21116 Davidia involucrata HOM05D005032 ORTHO05D006268 7.4e-84 314.7 292 64.0
Medtr1g111330 Medicago truncatula HOM05D005032 ORTHO05D006268 9.1e-82 307.8 292 63.7
HanXRQChr16g0529611 Helianthus annuus HOM05D005032 ORTHO05D006268 2.6e-81 306.2 225 74.7
Manes.14G099000 Manihot esculenta HOM05D005032 ORTHO05D006268 2.6e-81 306.2 292 63.0
TWI79G0027 Tripterygium wilfordii HOM05D005032 ORTHO05D006268 4.5e-81 305.4 292 62.7
Atru.chr11.1329 Acer truncatum HOM05D005032 ORTHO05D006268 5.9e-81 305.1 225 75.1
DCAR_026721 Daucus carota HOM05D005032 ORTHO05D006268 5.9e-81 305.1 288 63.2
ECA234G2686 Erigeron canadensis HOM05D005032 ORTHO05D006268 7.7e-81 304.7 292 62.3
Lsat_1_v5_gn_4_18881 Lactuca sativa HOM05D005032 ORTHO05D006268 7.7e-81 304.7 225 74.2
Ca_11190_v3 Cicer arietinum L. HOM05D005032 ORTHO05D006268 1.0e-80 304.3 292 62.7
Lsat_1_v5_gn_3_59981 Lactuca sativa HOM05D005032 ORTHO05D006268 1.7e-80 303.5 292 61.6
arahy.Tifrunner.gnm1.ann1.HPX6PX Arachis hypogaea HOM05D005032 ORTHO05D006268 2.2e-80 303.1 292 62.3
Lj5g0015640 Lotus japonicus HOM05D005032 ORTHO05D006268 2.2e-80 303.1 292 62.3
Psat6g229600 Pisum sativum HOM05D005032 ORTHO05D006268 2.2e-80 303.1 292 62.3
FvH4_4g27760 Fragaria vesca HOM05D005032 ORTHO05D006268 3.8e-80 302.4 292 62.7
FAN12G2852 Fragaria x ananassa HOM05D005032 ORTHO05D006268 3.8e-80 302.4 292 62.7
QL01p044542 Quercus lobata HOM05D005032 ORTHO05D006268 5.0e-80 302.0 292 62.7
RcHm_v2.0_Chr4g0435621 Rosa chinensis HOM05D005032 ORTHO05D006268 5.0e-80 302.0 292 62.7
arahy.Tifrunner.gnm1.ann1.WF5P9Q Arachis hypogaea HOM05D005032 ORTHO05D006268 6.5e-80 301.6 292 62.0
FAN07G0299 Fragaria x ananassa HOM05D005032 ORTHO05D006268 8.5e-80 301.2 292 62.7
Lalb_Chr17g0341981 Lupinus albus HOM05D005032 ORTHO05D006268 8.5e-80 301.2 292 61.3
MD13G1044800 Malus domestica HOM05D005032 ORTHO05D006268 8.5e-80 301.2 292 62.7
Lalb_Chr02g0146101 Lupinus albus HOM05D005032 ORTHO05D006268 1.1e-79 300.8 292 62.7
TPR.G26307 Trifolium pratense HOM05D005032 ORTHO05D006268 1.1e-79 300.8 292 62.3
FAN22G0537 Fragaria x ananassa HOM05D005032 ORTHO05D006268 1.4e-79 300.4 292 62.3
Glyma.10G276200 Glycine max HOM05D005032 ORTHO05D006268 1.9e-79 300.1 292 61.6
ECA246G3837 Erigeron canadensis HOM05D005032 ORTHO05D006268 2.5e-79 299.7 292 62.3
Nitab4.5_0000672g0140 Nicotiana tabacum HOM05D005032 ORTHO05D006268 4.2e-79 298.9 225 73.8
Sc04g0004960 Simmondsia chinensis HOM05D005032 ORTHO05D006268 4.2e-79 298.9 292 61.3
TAR374G1139 Trochodendron aralioides HOM05D005032 ORTHO05D006268 5.5e-79 298.5 225 74.2
VMungo0720G2532 Vigna mungo HOM05D005032 ORTHO05D006268 5.5e-79 298.5 292 61.3
Sabra08G0089600 Salix brachista HOM05D005032 ORTHO05D006268 7.2e-79 298.1 292 62.0
GSVIVG01011930001 Vitis vinifera HOM05D005032 ORTHO05D006268 7.2e-79 298.1 226 73.5
CAN.G656.42 Capsicum annuum HOM05D005032 ORTHO05D006268 1.2e-78 297.4 225 74.7
Phvul.007G025400 Phaseolus vulgaris HOM05D005032 ORTHO05D006268 1.2e-78 297.4 292 60.6
VMungo1215G1708 Vigna mungo HOM05D005032 ORTHO05D006268 1.2e-78 297.4 292 62.0
Cc00_g17470 Coffea canephora HOM05D005032 ORTHO05D006268 1.6e-78 297.0 225 73.3
Lj2g0024967 Lotus japonicus HOM05D005032 ORTHO05D006268 1.6e-78 297.0 292 61.3
MD16G1046200 Malus domestica HOM05D005032 ORTHO05D006268 1.6e-78 297.0 295 62.4
Nitab4.5_0003642g0010 Nicotiana tabacum HOM05D005032 ORTHO05D006268 1.6e-78 297.0 292 61.0
Phvul.003G028700 Phaseolus vulgaris HOM05D005032 ORTHO05D006268 1.6e-78 297.0 292 61.3
HanXRQChr17g0552231 Helianthus annuus HOM05D005032 ORTHO05D006268 2.1e-78 296.6 292 61.0
Potri.008G118200 Populus trichocarpa HOM05D005032 ORTHO05D006268 2.7e-78 296.2 225 73.8
CiPaw.15G004700 Carya illinoinensis HOM05D005032 ORTHO05D006268 3.6e-78 295.8 292 61.6
Glyma.20G113500 Glycine max HOM05D005032 ORTHO05D006268 3.6e-78 295.8 292 60.6
Glyma.01G084500 Glycine max HOM05D005032 ORTHO05D006268 4.7e-78 295.4 292 61.0
Gohir.A13G053540 Gossypium hirsutum HOM05D005032 ORTHO05D006268 4.7e-78 295.4 225 74.2
Medtr5g054780 Medicago truncatula HOM05D005032 ORTHO05D006268 7.9e-78 294.7 225 73.8
Nn3g17775 Nelumbo nucifera HOM05D005032 ORTHO05D006268 7.9e-78 294.7 225 72.9
PSO782G1090 Papaver somniferum HOM05D005032 ORTHO05D006268 7.9e-78 294.7 225 71.6
Cfa018616 Carpinus fangiana HOM05D005032 ORTHO05D006268 1.0e-77 294.3 292 62.0
Gohir.D13G070800 Gossypium hirsutum HOM05D005032 ORTHO05D006268 1.8e-77 293.5 225 73.8
Gorai.013G081000 Gossypium raimondii HOM05D005032 ORTHO05D006268 1.8e-77 293.5 225 73.8
AUR62002904 Chenopodium quinoa HOM05D005032 ORTHO05D006268 2.3e-77 293.1 291 60.1
Gohir.A12G169300 Gossypium hirsutum HOM05D005032 ORTHO05D006268 2.3e-77 293.1 225 74.7
Potri.010G128100 Populus trichocarpa HOM05D005032 ORTHO05D006268 2.3e-77 293.1 292 61.3
Ah.03g137830 Amaranthus hybridus HOM05D005032 ORTHO05D006268 3.0e-77 292.7 291 59.8
Lj6A762T40 Lonicera japonica HOM05D005032 ORTHO05D006268 3.0e-77 292.7 268 64.6
Lj6A763T35 Lonicera japonica HOM05D005032 ORTHO05D006268 3.0e-77 292.7 268 64.6
TPR.G38289 Trifolium pratense HOM05D005032 ORTHO05D006268 3.9e-77 292.4 225 72.9
Gorai.008G185100 Gossypium raimondii HOM05D005032 ORTHO05D006268 5.1e-77 292.0 225 74.2
Sopen05g005490 Solanum pennellii HOM05D005032 ORTHO05D006268 5.1e-77 292.0 224 72.8
AUR62035263 Chenopodium quinoa HOM05D005032 ORTHO05D006268 6.7e-77 291.6 291 59.8
Oeu041892.2 Olea europaea HOM05D005032 ORTHO05D006268 6.7e-77 291.6 226 73.5
Migut.E00317 Erythranthe guttata HOM05D005032 ORTHO05D006268 1.1e-76 290.8 225 71.1
PSO063G0757 Papaver somniferum HOM05D005032 ORTHO05D006268 1.1e-76 290.8 225 70.2
Sabra10G0097300 Salix brachista HOM05D005032 ORTHO05D006268 1.1e-76 290.8 225 72.0
PGSC0003DMG402012961 Solanum tuberosum HOM05D005032 ORTHO05D006268 1.1e-76 290.8 225 72.9
Thecc.02G359100 Theobroma cacao HOM05D005032 ORTHO05D006268 1.1e-76 290.8 225 72.9
Peaxi162Scf00380g00811 Petunia axillaris HOM05D005032 ORTHO05D006268 5.7e-76 288.5 232 70.3
Solyc05g009670.3 Solanum lycopersicum HOM05D005032 ORTHO05D006268 9.7e-76 287.7 224 72.3
EL10Ac6g14461 Beta vulgaris HOM05D005032 ORTHO05D006268 1.3e-75 287.3 291 59.8
THA.LOC104808234 Tarenaya hassleriana HOM05D005032 ORTHO05D006268 1.3e-75 287.3 226 73.0
SalBow8G5398 Salvia bowleyana HOM05D005032 ORTHO05D006268 1.7e-75 287.0 225 72.0
Haze_17453 Corylus avellana HOM05D005032 ORTHO05D006268 2.8e-75 286.2 309 58.9
MELO3C012225.2 Cucumis melo HOM05D005032 ORTHO05D006268 2.8e-75 286.2 225 70.7
Ciclev10031322m.g Citrus clementina HOM05D005032 ORTHO05D006268 3.7e-75 285.8 225 71.6
PGR102G0428 Punica granatum HOM05D005032 ORTHO05D006268 3.7e-75 285.8 225 72.4
CsaV3_5G034080 Cucumis sativus L. HOM05D005032 ORTHO05D006268 6.3e-75 285.0 224 70.5
Psat2g101480 Pisum sativum HOM05D005032 ORTHO05D006268 6.3e-75 285.0 225 71.6
Sed0015336 Sechium edule HOM05D005032 ORTHO05D006268 8.2e-75 284.6 225 70.7
CANSAT64G1793 Cannabis sativa HOM05D005032 ORTHO05D006268 1.4e-74 283.9 293 60.1
ClCG05G022930 Citrullus lanatus HOM05D005032 ORTHO05D006268 1.4e-74 283.9 225 70.2
CiPaw.16G004100 Carya illinoinensis HOM05D005032 ORTHO05D006268 2.4e-74 283.1 226 71.7
Hund25090 Selenicereus undatus HOM05D005032 ORTHO05D006268 2.4e-74 283.1 292 57.5
CDE05G1095 Ceratophyllum demersum HOM05D005032 ORTHO05D006268 3.1e-74 282.7 225 69.8
Aqoxy3G03931 Aquilegia oxysepala HOM05D005032 ORTHO05D006268 5.3e-74 282.0 296 58.4
Eucgr.B03034 Eucalyptus grandis HOM05D005032 ORTHO05D006268 1.5e-73 280.4 225 70.7
arahy.Tifrunner.gnm1.ann1.P6ZXGF Arachis hypogaea HOM05D005032 ORTHO05D006268 1.3e-72 277.3 292 57.2
Ca_19113_v3 Cicer arietinum L. HOM05D005032 ORTHO05D006268 1.3e-72 277.3 292 58.2
MSTRG.2252 Avicennia marina HOM05D005032 ORTHO05D006268 3.8e-72 275.8 225 68.9
arahy.Tifrunner.gnm1.ann1.HVU79Z Arachis hypogaea HOM05D005032 ORTHO05D006268 5.0e-72 275.4 292 56.8
Prupe.1G307200 Prunus persica HOM05D005032 ORTHO05D006268 1.4e-71 273.9 182 80.8
Os02g0580100 Oryza sativa ssp. japonica HOM05D005032 ORTHO05D006268 2.5e-71 273.1 292 54.8
Aa31LG7G9000 Aethionema arabicum HOM05D005032 ORTHO05D006268 5.5e-71 271.9 294 57.5
Actinidia38384 Actinidia chinensis HOM05D005032 ORTHO05D006268 7.2e-71 271.6 228 72.4
Thhalv10007483m.g Eutrema salsugineum HOM05D005032 ORTHO05D006268 2.7e-70 269.6 293 58.0
Sp1g22710 Schrenkiella parvula HOM05D005032 ORTHO05D006268 3.6e-70 269.2 293 57.7
CARHR025960 Cardamine hirsuta HOM05D005032 ORTHO05D006268 4.7e-70 268.9 293 58.0
AT1G25500 Arabidopsis thaliana HOM05D005032 ORTHO05D006268 8.0e-70 268.1 293 57.7
Carub.0001s2498 Capsella rubella HOM05D005032 ORTHO05D006268 1.0e-69 267.7 293 57.7
A08p27010 Brassica napus HOM05D005032 ORTHO05D006268 1.8e-69 266.9 293 57.0
C03p72880 Brassica napus HOM05D005032 ORTHO05D006268 1.8e-69 266.9 293 57.0
BolC3t19586H Brassica oleracea HOM05D005032 ORTHO05D006268 1.8e-69 266.9 293 57.0
BraA08t34647Z Brassica rapa HOM05D005032 ORTHO05D006268 1.8e-69 266.9 293 57.0
Zm00001eb245170 Zea mays HOM05D005032 ORTHO05D006268 2.3e-69 266.5 288 54.5
ATR0097G002 Amborella trichopoda HOM05D005032 ORTHO05D006268 3.9e-69 265.8 292 54.8
AL1G39800 Arabidopsis lyrata HOM05D005032 ORTHO05D006268 5.2e-69 265.4 298 57.4
Duzib248G0180 Durio zibethinus HOM05D005032 ORTHO05D006268 9.7e-68 261.2 182 77.5
SEGI_10382 Sequoiadendron giganteum HOM05D005032 ORTHO05D006268 9.7e-68 261.2 223 65.5
unitig_699.g19492 Utricularia gibba HOM05D005032 ORTHO05D006268 1.1e-66 257.7 223 64.1
HPP92_006145 Vanilla planifolia HOM05D005032 ORTHO05D006268 7.2e-63 245.0 182 70.3
CSS0021499 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 4.8e-59 232.3 172 77.9
CSS0010323 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 1.6e-57 227.3 239 60.3
CSS0024978 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 1.6e-57 227.3 239 60.3
MBI13_g09687_MAGBIO Magnolia biondii HOM05D005032 ORTHO05D006268 2.7e-57 226.5 179 70.9
Mapoly0004s0207 Marchantia polymorpha HOM05D005032 ORTHO05D006268 1.7e-56 223.8 226 53.1
CSS0047250 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 1.6e-54 217.2 128 88.3
Gohir.D12G172600 Gossypium hirsutum HOM05D005032 ORTHO05D006268 1.8e-53 213.8 179 70.4
SMO165G0124 Selaginella moellendorffii HOM05D005032 ORTHO05D006268 3.4e-52 209.5 224 54.9
COL.COLO4_07886 Corchorus olitorius HOM05D005032 ORTHO05D006268 8.3e-43 178.3 182 59.3
BcaC01g01716 Brassica carinata HOM05D005032 ORTHO05D006268 2.4e-34 150.2 110 70.0
Oeu004599.1 Olea europaea HOM05D005032 ORTHO05D006268 5.0e-32 142.5 213 47.4
BcaC01g01701 Brassica carinata HOM05D005032 ORTHO05D006268 9.2e-26 121.7 184 48.9
BcaB03g12017 Brassica carinata HOM05D005032 ORTHO05D006268 2.7e-25 120.2 116 64.7
CBR_g30194 Chara braunii HOM05D005032 ORTHO05D006268 6.8e-21 105.5 134 47.8
BcaB03g14048 Brassica carinata HOM05D005032 ORTHO05D006268 3.2e-18 96.7 116 56.9
Psat7g191480 Pisum sativum HOM05D005032 ORTHO05D006268 3.1e-13 80.1 61 75.4
CBR_g546 Chara braunii HOM05D005032 ORTHO05D006268 4.0e-13 79.7 232 32.3
CSS0048629 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D006268 5.2e-13 79.3 49 81.6
Cpa.g.sc1.205 Carica papaya HOM05D005032 ORTHO05D006268 8.9e-13 78.6 52 75.0
Pp3c19_5950 Physcomitrium patens HOM05D002512 ORTHO05D002660 4.4e-12 76.3 206 35.4
Mapoly0029s0041 Marchantia polymorpha HOM05D002512 ORTHO05D002660 1.9e-10 70.9 232 28.9
Psat2g182600 Pisum sativum HOM05D002751 ORTHO05D003005 4.6e-09 66.2 44 77.3


User provided reference genes

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