Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 2364.7 1198 100.0
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1648.3 1253 70.3
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1643.6 1248 70.3
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1587.0 1246 68.5
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1586.6 1245 68.7
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 0.0e+00 1449.5 1369 58.9
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 0.0e+00 1438.7 1237 63.4
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1292.7 1250 57.8
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1276.9 1256 55.8
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 0.0e+00 1258.4 1230 58.1
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1252.7 1240 56.2
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1241.1 1252 56.2
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1220.7 1101 60.9
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1219.9 1254 54.9
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1218.4 1266 54.7
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1217.2 1261 54.6
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1215.3 1274 54.9
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1207.2 1256 54.6
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1200.3 1268 54.2
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1181.0 1250 52.6
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1153.7 1259 51.9
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 0.0e+00 1151.3 1240 53.5
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1145.2 1257 51.2
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1143.6 1258 52.3
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 1142.1 1256 51.8
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 0.0e+00 1140.6 1256 51.9
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 0.0e+00 1139.8 1259 51.2
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1137.9 1247 52.4
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1137.5 1251 51.8
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1136.7 1253 51.2
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1130.9 1253 50.8
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1124.8 1251 52.0
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1109.4 1258 51.2
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1107.4 1255 51.1
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1105.5 1251 51.7
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 1101.3 1245 49.2
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 0.0e+00 1100.1 1252 51.0
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1098.2 1252 51.0
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 0.0e+00 1091.3 1211 53.2
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 1090.5 1245 48.8
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 0.0e+00 1088.9 1247 49.2
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 0.0e+00 1077.0 1248 48.7
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 8.2e-312 1073.9 1252 49.0
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 3.3e-311 1072.0 1265 48.9
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 1.6e-310 1069.7 1245 48.4
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 5.4e-306 1054.7 1240 48.1
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 2.7e-305 1052.4 1228 49.0
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 2.7e-297 1025.8 1232 47.3
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 7.4e-295 1017.7 1231 47.5
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 1.4e-293 1013.4 1254 48.6
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 4.3e-287 991.9 1260 46.6
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 5.6e-287 991.5 1241 47.1
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 3.1e-285 985.7 1243 46.6
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 2.0e-284 983.0 1247 46.6
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 3.2e-282 975.7 1237 47.3
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 3.9e-280 968.8 1229 46.1
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 2.5e-279 966.1 1217 46.7
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 4.8e-278 961.8 1182 47.0
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 4.5e-276 955.3 1254 45.6
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 9.3e-274 947.6 1234 46.4
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 1.3e-270 937.2 1237 46.2
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 2.9e-267 926.0 1238 46.3
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 1.6e-265 920.2 1233 46.2
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 7.9e-265 917.9 1241 46.1
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 2.3e-264 916.4 1241 45.1
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 3.9e-264 915.6 1238 45.8
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 3.7e-262 909.1 1226 45.8
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 3.1e-261 906.0 1220 46.4
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 1.5e-250 870.5 1231 44.4
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 1.5e-247 860.5 1255 43.3
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 1.0e-243 847.8 1222 43.5
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 2.9e-243 846.3 1242 42.7
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 7.0e-237 825.1 1225 43.2
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 1.2e-236 824.3 1208 43.0
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 5.9e-236 822.0 1209 42.0
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 1.0e-232 811.2 1225 41.9
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.0e-224 784.6 1228 40.8
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 1.5e-218 764.2 694 60.7
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 2.0e-215 753.8 1237 41.2
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 3.5e-212 743.0 702 57.4
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 3.9e-211 739.6 1227 40.3
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 1.1e-208 731.5 1197 40.1
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.2e-204 718.0 1244 38.2
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.5e-202 711.1 1065 41.4
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 5.2e-200 702.6 1215 38.5
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.9e-197 694.1 1160 39.8
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 3.5e-196 689.9 685 55.9
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 3.9e-187 659.8 1199 36.9
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 6.4e-182 642.5 1118 38.0
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 1.6e-180 637.9 702 52.3
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 1.1e-178 631.7 1246 35.8
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 9.0e-176 622.1 1197 36.1
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 2.7e-172 610.5 1255 35.0
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 2.3e-171 607.4 1239 34.7
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 1.6e-164 584.7 550 57.3
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 5.0e-142 510.0 733 43.0
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.4e-136 491.9 467 57.2
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 4.5e-135 486.9 663 48.6
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 6.3e-129 466.5 733 41.2
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 4.5e-127 460.3 541 50.1
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.9e-125 454.9 763 38.5
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 1.6e-124 451.8 766 39.2
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 7.2e-117 426.4 693 37.7
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 4.4e-114 417.2 956 34.9
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 4.6e-95 354.0 849 31.6
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 2.5e-93 348.2 679 35.8
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 2.8e-92 344.7 371 51.5
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 5.2e-91 340.5 811 31.7
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.4e-67 261.9 504 34.9
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 4.0e-67 261.2 334 45.5
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 3.0e-62 245.0 785 27.1
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.4e-43 183.0 328 36.0
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 2.1e-39 169.1 163 54.6
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 6.3e-36 157.5 117 69.2
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 6.5e-33 147.5 575 30.4
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 1.4e-32 146.4 260 32.7
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 1.1e-29 136.7 549 29.9
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 3.5e-26 125.2 216 38.4
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 5.5e-24 117.9 369 26.0
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 6.7e-22 110.9 561 29.6
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 3.3e-21 108.6 389 24.2
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 1.3e-17 96.7 585 25.6
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 2.2e-17 95.9 469 28.1
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 3.8e-17 95.1 142 37.3
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 8.5e-17 94.0 558 28.0
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 1.1e-16 93.6 185 36.2
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 1.5e-16 93.2 558 28.0
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 3.2e-16 92.0 531 29.0
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 3.2e-16 92.0 531 29.0
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 4.2e-16 91.7 559 25.4
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.0e-14 87.0 274 33.6
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.0e-14 87.0 274 33.6
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 1.4e-14 86.7 556 27.3
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 7.5e-13 80.9 545 24.8
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 2.4e-11 75.9 597 24.8
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 4.1e-11 75.1 127 35.4
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 7.7e-10 70.9 300 22.3
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 1.3e-09 70.1 336 23.5
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 2.9e-09 68.9 84 46.4
TPR.G19009 Trifolium pratense HOM05D006144 ORTHO05D006357 8.0e-07 60.8 91 35.2


User provided reference genes

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