Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044512 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.5e-89 332.0 163 100.0
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 9.9e-86 320.1 161 97.5
Dinv14879 Davidia involucrata HOM05D002996 ORTHO05D003536 1.9e-76 289.3 166 88.0
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.5e-76 288.9 167 86.8
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 4.2e-76 288.1 167 86.2
Actinidia17659 Actinidia chinensis HOM05D002996 ORTHO05D003536 9.3e-76 287.0 167 86.2
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 6.1e-75 284.3 166 85.5
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 1.0e-74 283.5 163 85.9
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.3e-74 283.1 167 85.0
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 2.3e-74 282.3 167 85.6
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 2.3e-74 282.3 167 83.8
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 3.0e-74 282.0 166 84.9
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 3.0e-74 282.0 166 84.9
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 3.9e-74 281.6 161 85.7
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 5.1e-74 281.2 166 85.5
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 6.7e-74 280.8 167 84.4
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 6.7e-74 280.8 167 84.4
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.1e-73 280.0 167 83.8
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 1.5e-73 279.6 167 83.8
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 1.5e-73 279.6 166 82.5
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 1.5e-73 279.6 167 83.2
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 1.5e-73 279.6 166 83.7
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 1.9e-73 279.3 167 83.2
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.9e-73 279.3 167 83.8
CsaV3_3G021610 Cucumis sativus L. HOM05D002996 ORTHO05D003536 2.5e-73 278.9 167 83.2
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 4.3e-73 278.1 168 82.7
Sc10g0000820 Simmondsia chinensis HOM05D002996 ORTHO05D003536 5.7e-73 277.7 166 84.3
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 7.4e-73 277.3 166 80.7
PGSC0003DMG402030647 Solanum tuberosum HOM05D002996 ORTHO05D003536 7.4e-73 277.3 167 83.2
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 9.7e-73 276.9 166 81.9
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 1.3e-72 276.6 166 80.7
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 1.6e-72 276.2 166 81.3
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 1.6e-72 276.2 165 83.6
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 1.6e-72 276.2 167 82.6
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 2.2e-72 275.8 168 81.5
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 2.2e-72 275.8 168 81.5
MBI16_g14302_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 2.8e-72 275.4 166 83.1
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 2.8e-72 275.4 163 84.7
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 2.8e-72 275.4 167 82.6
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 4.8e-72 274.6 168 82.1
FAN08G1319 Fragaria x ananassa HOM05D002996 ORTHO05D003536 4.8e-72 274.6 169 81.1
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 6.3e-72 274.2 166 81.3
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 8.2e-72 273.9 166 80.1
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 8.2e-72 273.9 167 82.6
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 8.2e-72 273.9 167 82.0
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 1.1e-71 273.5 164 82.3
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 1.4e-71 273.1 166 79.5
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 1.4e-71 273.1 167 81.4
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 1.8e-71 272.7 166 81.3
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 1.8e-71 272.7 163 83.4
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 1.8e-71 272.7 163 83.4
COL.COLO4_15723 Corchorus olitorius HOM05D002996 ORTHO05D003536 2.4e-71 272.3 166 81.9
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 2.4e-71 272.3 165 82.4
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 2.4e-71 272.3 151 87.4
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 3.1e-71 271.9 154 85.1
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 4.1e-71 271.6 166 83.1
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 4.1e-71 271.6 166 79.5
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 4.1e-71 271.6 167 81.4
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 4.1e-71 271.6 167 81.4
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 5.3e-71 271.2 169 78.7
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 5.3e-71 271.2 151 86.8
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 6.9e-71 270.8 166 79.5
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 6.9e-71 270.8 166 78.9
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 6.9e-71 270.8 166 78.9
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 6.9e-71 270.8 166 81.9
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 6.9e-71 270.8 166 81.9
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 6.9e-71 270.8 166 81.9
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 9.0e-71 270.4 163 82.8
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 9.0e-71 270.4 165 81.8
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 9.0e-71 270.4 163 84.0
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 2.6e-70 268.9 166 81.3
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 3.4e-70 268.5 166 81.9
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 3.4e-70 268.5 151 85.4
Cpa.g.c28186.1 Carica papaya HOM05D002996 ORTHO05D003536 4.5e-70 268.1 166 80.7
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 4.5e-70 268.1 166 80.7
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 5.9e-70 267.7 166 78.3
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 5.9e-70 267.7 166 81.3
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 7.7e-70 267.3 163 82.8
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 1.0e-69 266.9 163 83.4
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 1.0e-69 266.9 171 79.5
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 2.9e-69 265.4 165 80.0
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 3.8e-69 265.0 166 79.5
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 3.8e-69 265.0 166 79.5
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 6.5e-69 264.2 167 79.0
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 6.5e-69 264.2 161 80.1
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 8.5e-69 263.8 170 76.5
Dinv19011 Davidia involucrata HOM05D002996 ORTHO05D003536 1.9e-68 262.7 147 87.8
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 2.5e-68 262.3 166 78.9
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 3.2e-68 261.9 166 78.3
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 4.2e-68 261.5 160 80.0
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 4.2e-68 261.5 149 85.9
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 4.2e-68 261.5 166 78.9
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 5.5e-68 261.2 156 81.4
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 5.5e-68 261.2 156 81.4
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 5.5e-68 261.2 166 77.7
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 7.2e-68 260.8 164 77.4
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 7.2e-68 260.8 161 78.9
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 7.2e-68 260.8 156 80.8
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 7.2e-68 260.8 161 78.9
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 9.4e-68 260.4 165 78.2
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 9.4e-68 260.4 163 78.5
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 6.1e-67 257.7 165 78.2
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 7.9e-67 257.3 166 79.5
Ca_17109_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 7.9e-67 257.3 166 79.5
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 2.3e-66 255.8 162 80.2
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 2.3e-66 255.8 162 80.2
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 2.3e-66 255.8 140 85.7
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 5.1e-66 254.6 151 79.5
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 6.7e-66 254.2 165 76.4
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 8.8e-66 253.8 165 77.0
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 1.5e-65 253.1 157 79.0
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 2.0e-65 252.7 147 84.4
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 3.7e-64 248.4 166 77.1
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 3.7e-64 248.4 160 75.6
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 4.1e-63 245.0 141 84.4
CsaV3_1G027780 Cucumis sativus L. HOM05D002996 ORTHO05D003536 9.1e-63 243.8 156 77.6
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 9.1e-63 243.8 140 82.1
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.0e-61 240.4 172 75.6
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 2.2e-61 239.2 163 71.2
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 2.9e-61 238.8 162 74.1
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 5.0e-61 238.0 151 75.5
vmacro05508 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 6.5e-61 237.7 154 76.0
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 1.1e-60 236.9 154 77.9
SEGI_40820 Sequoiadendron giganteum HOM05D002996 ORTHO05D003536 1.1e-60 236.9 152 78.3
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 1.4e-60 236.5 129 88.4
Manes.01G116000 Manihot esculenta HOM05D002996 ORTHO05D003536 4.2e-60 235.0 168 69.6
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 9.4e-60 233.8 147 76.9
PSO407G0242 Papaver somniferum HOM05D002996 ORTHO05D003536 1.4e-58 229.9 136 80.9
Pp3c1_28480 Physcomitrium patens HOM05D002996 ORTHO05D003536 3.0e-58 228.8 150 77.3
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 5.1e-58 228.0 136 80.1
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 1.1e-57 226.9 167 70.7
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.7e-56 223.0 163 71.2
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 3.7e-56 221.9 129 79.8
HanXRQChr09g0262281 Helianthus annuus HOM05D002996 ORTHO05D003536 7.0e-55 217.6 118 89.0
PSO407G0207 Papaver somniferum HOM05D002996 ORTHO05D003536 7.0e-55 217.6 129 78.3
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 6.5e-53 211.1 136 74.3
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 4.7e-51 204.9 129 75.2
Cre03.g180650 Chlamydomonas reinhardtii HOM05D002996 ORTHO05D003536 5.2e-50 201.4 138 65.9
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 4.1e-47 191.8 103 89.3
CiPaw.03G068900 Carya illinoinensis HOM05D002996 ORTHO05D003536 9.1e-47 190.7 123 78.9
Hma1.2p1_0832F.1_g225610 Hydrangea macrophylla HOM05D002996 ORTHO05D003536 9.1e-47 190.7 120 79.2
vmacro05511 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.2e-46 190.3 204 52.0
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 2.0e-46 189.5 103 88.3
CDE10G1224 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 3.5e-46 188.7 97 91.8
TPR.G27497 Trifolium pratense HOM05D002996 ORTHO05D003536 4.5e-46 188.3 126 73.0
DCAR_010738 Daucus carota HOM05D002996 ORTHO05D003536 9.4e-44 180.6 117 76.1
MCO10G011 Micromonas commoda HOM05D002996 ORTHO05D003536 1.6e-43 179.9 150 58.0
Nitab4.5_0002366g0060 Nicotiana tabacum HOM05D002996 ORTHO05D003536 2.0e-41 172.9 102 84.3
SalBow1G7030 Salvia bowleyana HOM05D002996 ORTHO05D003536 1.3e-40 170.2 157 60.5
FAN04G0036 Fragaria x ananassa HOM05D002996 ORTHO05D003536 4.2e-36 155.2 106 74.5
CDE11G1125 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 1.2e-35 153.7 92 81.5
Cfa025176 Carpinus fangiana HOM05D002996 ORTHO05D003536 3.0e-34 149.1 142 50.7
Lj2C435G4 Lonicera japonica HOM05D002996 ORTHO05D003536 3.4e-33 145.6 94 79.8
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 4.4e-33 145.2 132 60.6
vmacro05503 Vaccinium macrocarpon HOM05D002996 ORTHO05D004756 4.8e-32 141.7 69 95.7
Lsat_1_v5_gn_1_126760 Lactuca sativa HOM05D002996 ORTHO05D004698 3.8e-29 132.1 81 79.0
GSVIVG01037949001 Vitis vinifera HOM05D002996 ORTHO05D003536 3.8e-29 132.1 106 65.1
Zm00001eb125510 Zea mays HOM05D002996 ORTHO05D003536 8.6e-29 131.0 70 85.7
Nitab4.5_0000465g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 5.2e-26 121.7 77 80.5
vmacro05504 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 9.2e-23 110.9 85 64.7
HanXRQChr06g0182761 Helianthus annuus HOM05D002996 ORTHO05D003536 2.7e-22 109.4 56 87.5
Manes.04G143783 Manihot esculenta HOM05D002996 ORTHO05D003536 2.2e-16 89.7 89 56.2
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 7.0e-15 84.7 77 61.0
Nitab4.5_0026266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 7.0e-15 84.7 77 61.0
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 6.0e-14 81.6 45 82.2
PGSC0003DMG400014175 Solanum tuberosum HOM05D002996 ORTHO05D003536 3.6e-11 72.4 45 77.8
Zm00001eb156170 Zea mays HOM05D002996 ORTHO05D025899 4.7e-11 72.0 39 87.2
Zm00001eb156180 Zea mays HOM05D002996 ORTHO05D004756 4.7e-11 72.0 39 87.2
Solyc01g056910.1 Solanum lycopersicum HOM05D002996 ORTHO05D003536 1.8e-10 70.1 42 76.2
Os02g0712000 Oryza sativa ssp. japonica HOM05D002996 ORTHO05D003536 3.4e-09 65.9 34 91.2
Lj2C435G10 Lonicera japonica HOM05D002996 ORTHO05D003536 4.4e-09 65.5 34 94.1
Nitab4.5_0002366g0050 Nicotiana tabacum HOM05D002996 ORTHO05D003536 7.1e-07 58.2 30 86.7


User provided reference genes

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