Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 7.0e-47 190.3 96 100.0
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 3.7e-16 88.2 78 61.5
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.4e-15 86.3 88 58.0
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.4e-15 86.3 86 52.3
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 6.6e-13 77.4 78 59.0
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 8.6e-13 77.0 84 52.4
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 8.6e-13 77.0 88 53.4
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 8.6e-13 77.0 81 53.1
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 8.6e-13 77.0 85 52.9
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.1e-12 76.6 73 61.6
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.5e-12 76.3 82 57.3
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.5e-12 76.3 82 57.3
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 2.5e-12 75.5 80 53.8
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.3e-12 75.1 78 51.3
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.3e-12 75.1 78 51.3
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.3e-12 75.1 78 51.3
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 4.3e-12 74.7 86 45.3
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 5.6e-12 74.3 78 51.3
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 9.6e-12 73.6 84 51.2
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 2.1e-11 72.4 77 54.5
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 2.8e-11 72.0 75 53.3
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.7e-11 71.2 75 50.7
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 6.2e-11 70.9 76 53.9
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 8.1e-11 70.5 88 47.7
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 1.1e-10 70.1 84 41.7
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 1.1e-10 70.1 84 41.7
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 1.1e-10 70.1 75 54.7
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 1.4e-10 69.7 71 53.5
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 1.4e-10 69.7 83 49.4
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.8e-10 69.3 94 44.7
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 1.8e-10 69.3 80 52.5
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 1.8e-10 69.3 77 54.5
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.4e-10 68.9 84 44.0
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.4e-10 68.9 74 48.6
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.4e-10 68.9 74 48.6
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 2.4e-10 68.9 94 44.7
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.4e-10 68.9 94 44.7
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.4e-10 68.9 94 44.7
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 3.1e-10 68.6 62 58.1
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 4.0e-10 68.2 80 51.2
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 5.2e-10 67.8 86 50.0
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 6.8e-10 67.4 72 51.4
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 8.9e-10 67.0 75 48.0
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 8.9e-10 67.0 73 49.3
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 8.9e-10 67.0 84 40.5
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 1.2e-09 66.6 83 44.6
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.2e-09 66.6 71 45.1
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 1.2e-09 66.6 94 44.7
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.5e-09 66.2 79 48.1
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.0e-09 65.9 80 47.5
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 2.0e-09 65.9 47 66.0
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 2.6e-09 65.5 88 40.9
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.6e-09 65.5 82 40.2
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 3.4e-09 65.1 83 38.6
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 3.4e-09 65.1 83 38.6
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 3.4e-09 65.1 79 50.6
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 4.4e-09 64.7 71 42.3
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 4.4e-09 64.7 71 43.7
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 4.4e-09 64.7 71 43.7
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 4.4e-09 64.7 84 39.3
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 4.4e-09 64.7 71 43.7
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 4.4e-09 64.7 84 39.3
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 5.8e-09 64.3 70 48.6
Migut.L00903 Erythranthe guttata HOM05D004540 ORTHO05D004852 5.8e-09 64.3 70 48.6
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 7.6e-09 63.9 62 50.0
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 7.6e-09 63.9 71 52.1
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 7.6e-09 63.9 90 44.4
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 9.9e-09 63.5 83 49.4
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 9.9e-09 63.5 80 43.8
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 9.9e-09 63.5 75 52.0
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 1.3e-08 63.2 45 66.7
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 1.7e-08 62.8 78 46.2
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 1.7e-08 62.8 78 46.2
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 1.7e-08 62.8 78 46.2
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 1.7e-08 62.8 78 46.2
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 1.7e-08 62.8 78 46.2
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 1.7e-08 62.8 67 49.3
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.2e-08 62.4 76 46.1
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.2e-08 62.4 76 46.1
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.2e-08 62.4 76 46.1
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 2.9e-08 62.0 73 45.2
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 2.9e-08 62.0 73 45.2
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 2.9e-08 62.0 73 45.2
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 2.9e-08 62.0 73 45.2
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.9e-08 62.0 76 50.0
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 3.8e-08 61.6 45 62.2
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 4.9e-08 61.2 91 39.6
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 4.9e-08 61.2 91 39.6
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 6.4e-08 60.8 57 59.6
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 8.4e-08 60.5 73 42.5
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 8.4e-08 60.5 73 47.9
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 1.1e-07 60.1 82 46.3
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 1.1e-07 60.1 74 45.9
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 1.1e-07 60.1 77 46.8
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.4e-07 59.7 83 37.3
BcaC03g13276 Brassica carinata HOM05D004540 ORTHO05D004852 1.4e-07 59.7 80 45.0
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 1.4e-07 59.7 87 46.0
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.4e-07 59.7 59 52.5
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 1.9e-07 59.3 78 47.4
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.9e-07 59.3 65 50.8
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 2.4e-07 58.9 88 46.6
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 2.4e-07 58.9 55 60.0
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 3.2e-07 58.5 70 41.4
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 3.2e-07 58.5 70 41.4
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 3.2e-07 58.5 82 41.5
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 5.4e-07 57.8 82 42.7
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 5.4e-07 57.8 91 35.2
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 5.4e-07 57.8 74 44.6
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 5.4e-07 57.8 75 41.3
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 9.3e-07 57.0 87 39.1
Migut.L00808 Erythranthe guttata HOM05D004540 ORTHO05D004852 9.3e-07 57.0 73 43.8
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 9.3e-07 57.0 78 43.6
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 9.3e-07 57.0 62 53.2
C02p04070 Brassica napus HOM05D004540 ORTHO05D004852 1.2e-06 56.6 79 44.3
BolC2t06369H Brassica oleracea HOM05D004540 ORTHO05D004852 1.2e-06 56.6 79 44.3
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 1.2e-06 56.6 81 39.5
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 1.6e-06 56.2 71 39.4
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 1.6e-06 56.2 71 39.4
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 1.6e-06 56.2 82 43.9
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 2.1e-06 55.8 35 68.6
A02p00160 Brassica napus HOM05D004540 ORTHO05D004852 2.1e-06 55.8 84 42.9
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 2.1e-06 55.8 35 68.6
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 2.1e-06 55.8 35 68.6
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 2.1e-06 55.8 45 60.0
BraA02t05000Z Brassica rapa HOM05D004540 ORTHO05D004852 3.5e-06 55.1 79 43.0
Cpa.g.sc49.40 Carica papaya HOM05D004540 ORTHO05D004852 3.5e-06 55.1 75 44.0
RcHm_v2.0_Chr6g0276561 Rosa chinensis HOM05D019963 ORTHO05D004852 3.5e-06 55.1 95 42.1
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 4.6e-06 54.7 78 42.3
Lalb_Chr03g0035181 Lupinus albus HOM05D004540 ORTHO05D004852 4.6e-06 54.7 77 45.5
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 4.6e-06 54.7 62 51.6
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 4.6e-06 54.7 78 46.2
Aa31LG1G17280 Aethionema arabicum HOM05D004540 ORTHO05D004852 6.0e-06 54.3 74 41.9
BraA10t44817Z Brassica rapa HOM05D004540 ORTHO05D004852 6.0e-06 54.3 44 56.8
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 6.0e-06 54.3 27 77.8
Migut.H01103 Erythranthe guttata HOM05D004540 ORTHO05D004852 6.0e-06 54.3 61 50.8
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 6.0e-06 54.3 72 38.9
Sabra02G0055000 Salix brachista HOM05D004540 ORTHO05D004852 6.0e-06 54.3 73 42.5


User provided reference genes

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