Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 4.4e-132 474.6 229 100.0
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 1.0e-120 436.8 225 90.7
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 2.0e-116 422.5 222 87.8
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 2.0e-116 422.5 222 89.2
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 2.6e-116 422.2 225 88.9
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 1.3e-115 419.9 221 87.8
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 1.1e-114 416.8 222 86.9
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 1.1e-114 416.8 228 86.0
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.1e-114 416.8 235 85.1
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 1.4e-114 416.4 225 87.1
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 1.4e-114 416.4 221 86.9
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 1.9e-114 416.0 225 88.0
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 3.2e-114 415.2 224 86.6
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.2e-114 415.2 228 84.2
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 5.4e-114 414.5 222 86.9
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 5.4e-114 414.5 221 86.9
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 7.1e-114 414.1 229 86.0
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 1.6e-113 412.9 225 84.0
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 2.7e-113 412.1 225 84.9
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 3.5e-113 411.8 222 85.6
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 4.6e-113 411.4 222 85.6
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 6.0e-113 411.0 222 85.6
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 7.9e-113 410.6 221 86.0
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 2.3e-112 409.1 222 84.7
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 3.0e-112 408.7 222 84.7
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 3.0e-112 408.7 225 85.8
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 3.9e-112 408.3 228 83.8
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.9e-112 408.3 221 85.1
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 5.1e-112 407.9 224 85.7
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 5.1e-112 407.9 221 86.0
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 5.1e-112 407.9 228 84.2
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 6.7e-112 407.5 222 86.0
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 6.7e-112 407.5 222 86.5
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.1e-111 406.8 220 86.4
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 1.1e-111 406.8 221 86.0
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 1.1e-111 406.8 228 83.3
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 1.5e-111 406.4 221 85.1
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 1.9e-111 406.0 221 85.1
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 1.9e-111 406.0 224 83.5
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 2.5e-111 405.6 221 84.6
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 3.3e-111 405.2 229 82.5
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 3.3e-111 405.2 228 83.3
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 3.3e-111 405.2 228 83.3
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 4.3e-111 404.8 217 87.1
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 4.3e-111 404.8 227 83.7
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 9.6e-111 403.7 228 82.5
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 1.3e-110 403.3 222 83.8
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.1e-110 402.5 219 85.8
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.8e-110 402.1 222 84.7
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 3.7e-110 401.7 222 84.2
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 3.7e-110 401.7 222 83.8
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 3.7e-110 401.7 228 81.1
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 8.1e-110 400.6 222 82.9
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.4e-109 399.8 222 82.4
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 1.4e-109 399.8 221 84.6
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 1.4e-109 399.8 222 83.8
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 1.4e-109 399.8 222 84.7
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.8e-109 399.4 221 84.2
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.8e-109 399.4 222 82.9
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 2.4e-109 399.1 228 82.0
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 2.4e-109 399.1 221 84.2
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 3.1e-109 398.7 222 82.4
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 4.0e-109 398.3 228 82.0
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 9.0e-109 397.1 222 82.4
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 9.0e-109 397.1 222 82.0
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 1.2e-108 396.7 252 74.6
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 1.2e-108 396.7 219 85.4
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.5e-108 396.4 222 83.3
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 1.5e-108 396.4 221 84.6
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.6e-108 395.6 221 83.3
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 2.6e-108 395.6 222 82.9
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 4.5e-108 394.8 222 83.3
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 4.5e-108 394.8 219 83.6
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 4.5e-108 394.8 221 83.3
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 5.8e-108 394.4 221 84.2
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 5.8e-108 394.4 225 81.8
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 9.9e-108 393.7 222 82.0
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 1.3e-107 393.3 220 82.7
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 1.7e-107 392.9 207 88.4
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 1.7e-107 392.9 222 82.9
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 2.9e-107 392.1 220 82.3
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 2.9e-107 392.1 220 82.3
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 2.9e-107 392.1 220 82.3
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.9e-107 392.1 221 81.4
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 6.4e-107 391.0 220 82.3
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 6.4e-107 391.0 213 85.0
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 8.4e-107 390.6 221 83.3
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 8.4e-107 390.6 222 81.5
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 8.4e-107 390.6 220 82.3
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 1.1e-106 390.2 222 82.9
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.4e-106 389.8 221 81.4
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 1.4e-106 389.8 221 81.4
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.4e-106 389.8 207 87.4
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.4e-106 389.8 221 81.4
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 3.2e-106 388.7 222 82.0
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 4.2e-106 388.3 220 81.8
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 5.5e-106 387.9 220 81.8
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 5.5e-106 387.9 219 81.3
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 7.1e-106 387.5 220 80.5
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 9.3e-106 387.1 242 76.0
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.2e-105 386.7 221 81.0
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.2e-105 386.7 224 79.0
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 1.2e-105 386.7 222 80.6
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 2.1e-105 386.0 220 81.4
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 2.1e-105 386.0 220 81.8
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 2.7e-105 385.6 221 80.5
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 4.6e-105 384.8 220 79.5
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 6.0e-105 384.4 216 81.9
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 6.0e-105 384.4 225 80.4
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 7.9e-105 384.0 220 81.4
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 7.9e-105 384.0 220 81.4
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 3.0e-104 382.1 220 79.1
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 5.1e-104 381.3 221 80.5
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 2.5e-103 379.0 216 80.1
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.8e-102 374.8 276 67.0
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 1.4e-101 373.2 222 80.6
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 3.5e-97 358.6 208 81.2
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.5e-95 353.2 218 71.6
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 6.9e-93 344.4 228 72.4
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 5.1e-88 328.2 219 67.1
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 5.1e-88 328.2 219 67.6
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 2.8e-86 322.4 213 66.7
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 4.8e-86 321.6 220 67.3
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 3.0e-80 302.4 163 88.3
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 5.7e-79 298.1 164 87.2
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 1.2e-76 290.4 169 76.9
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.1e-73 279.6 153 83.0
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.8e-72 276.6 163 76.1
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 8.8e-72 274.2 220 58.2
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 2.3e-64 249.6 129 86.0
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.2e-62 243.0 159 71.1
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 2.7e-60 236.1 209 55.5
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 1.7e-59 233.4 214 52.8
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 2.5e-58 229.6 129 80.6
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 5.5e-58 228.4 148 80.4
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 1.4e-53 213.8 216 46.8
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 2.7e-52 209.5 111 89.2
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.6e-49 200.3 112 78.6
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 3.6e-49 199.1 115 76.5
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 5.9e-44 181.8 130 60.8
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.2e-39 167.5 86 82.6
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 7.0e-37 158.3 102 73.5
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.3e-35 154.1 218 39.0
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 1.5e-34 150.6 97 80.4
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.0e-27 127.9 75 81.3
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 5.1e-27 125.6 134 47.8
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 8.6e-27 124.8 108 56.5
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.6e-26 122.1 66 83.3
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 9.5e-26 121.3 78 79.5
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 3.1e-24 116.3 61 85.2
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.6e-20 104.0 61 83.6
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.6e-20 104.0 63 66.7
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 3.5e-20 102.8 54 85.2
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 3.5e-20 102.8 61 83.6
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.3e-19 100.9 64 76.6
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.7e-19 100.5 61 80.3
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 3.6e-17 92.8 58 79.3
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.3e-14 84.3 128 43.8
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 1.3e-14 84.3 54 79.6
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 1.3e-14 84.3 100 46.0
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 7.1e-13 78.6 51 74.5
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 3.6e-09 66.2 39 74.4
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 1.5e-07 60.8 43 74.4
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 2.0e-07 60.5 35 82.9


User provided reference genes

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