Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044468 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004782 4.1e-24 114.4 81 100.0
Lj4A739T30 Lonicera japonica HOM05D000921 ORTHO05D004782 4.4e-10 67.8 40 80.0
Dinv42602 Davidia involucrata HOM05D000921 ORTHO05D004782 5.8e-10 67.4 41 80.5
Actinidia19246 Actinidia chinensis HOM05D000921 ORTHO05D004782 1.3e-09 66.2 41 80.5
Prupe.1G534000 Prunus persica HOM05D000921 ORTHO05D004782 1.7e-09 65.9 43 72.1
TAR381G0975 Trochodendron aralioides HOM05D000921 ORTHO05D004782 3.7e-09 64.7 43 74.4
Cpa.g.sc474.1 Carica papaya HOM05D000921 ORTHO05D004782 1.1e-08 63.2 41 75.6
TWI56G0737 Tripterygium wilfordii HOM05D000921 ORTHO05D004782 1.1e-08 63.2 41 75.6
Hma1.2p1_0125F.1_g058740 Hydrangea macrophylla HOM05D000921 ORTHO05D004782 1.4e-08 62.8 41 75.6
Eucgr.F00430 Eucalyptus grandis HOM05D000921 ORTHO05D004782 1.9e-08 62.4 43 69.8
Gohir.D06G030750 Gossypium hirsutum HOM05D000921 ORTHO05D004782 2.4e-08 62.0 44 70.5
Gorai.010G033800 Gossypium raimondii HOM05D000921 ORTHO05D004782 2.4e-08 62.0 44 70.5
Potri.002G111000 Populus trichocarpa HOM05D000921 ORTHO05D004782 2.4e-08 62.0 43 72.1
MD15G1387600 Malus domestica HOM05D000921 ORTHO05D004782 3.2e-08 61.6 43 67.4
CANSAT54G2772 Cannabis sativa HOM05D000921 ORTHO05D004782 4.1e-08 61.2 43 72.1
CiPaw.07G164000 Carya illinoinensis HOM05D000921 ORTHO05D004782 4.1e-08 61.2 43 72.1
Sabra02G0087600 Salix brachista HOM05D000921 ORTHO05D004782 5.4e-08 60.8 41 75.6
GSVIVG01009194001 Vitis vinifera HOM05D000921 ORTHO05D004782 5.4e-08 60.8 43 69.8
Nitab4.5_0000131g0100 Nicotiana tabacum HOM05D000921 ORTHO05D004782 9.2e-08 60.1 43 69.8
Peaxi162Scf00454g00119 Petunia axillaris HOM05D000921 ORTHO05D004782 9.2e-08 60.1 43 69.8
QL09p018095 Quercus lobata HOM05D000921 ORTHO05D004782 9.2e-08 60.1 44 70.5
CAN.G475.8 Capsicum annuum HOM05D000921 ORTHO05D004782 1.2e-07 59.7 43 69.8
Manes.18G056822 Manihot esculenta HOM05D000921 ORTHO05D004782 1.2e-07 59.7 43 74.4
Atru.chr13.992 Acer truncatum HOM05D000921 ORTHO05D004782 1.6e-07 59.3 41 70.7
Gohir.A06G031500 Gossypium hirsutum HOM05D000921 ORTHO05D004782 1.6e-07 59.3 44 68.2
Medtr3g100060 Medicago truncatula HOM05D000921 ORTHO05D004782 1.6e-07 59.3 41 75.6
Lj1g0023313 Lotus japonicus HOM05D000921 ORTHO05D004782 2.1e-07 58.9 41 73.2
Nitab4.5_0002391g0010 Nicotiana tabacum HOM05D000921 ORTHO05D004782 2.1e-07 58.9 43 67.4
PGR042G3444 Punica granatum HOM05D000921 ORTHO05D004782 2.1e-07 58.9 43 67.4
RcHm_v2.0_Chr7g0235181 Rosa chinensis HOM05D000921 ORTHO05D004782 2.1e-07 58.9 43 67.4
Cc10_g08450 Coffea canephora HOM05D000921 ORTHO05D004782 2.7e-07 58.5 43 67.4
Sopen04g030240 Solanum pennellii HOM05D000921 ORTHO05D004782 2.7e-07 58.5 43 67.4
TPR.G6323 Trifolium pratense HOM05D000921 ORTHO05D004782 2.7e-07 58.5 41 75.6
Haze_22475 Corylus avellana HOM05D000921 ORTHO05D004782 3.5e-07 58.2 43 67.4
Ca_16011_v3 Cicer arietinum L. HOM05D000921 ORTHO05D004782 4.6e-07 57.8 41 75.6
Ciclev10000002m.g Citrus clementina HOM05D000921 ORTHO05D004782 6.0e-07 57.4 41 70.7
Migut.N02862 Erythranthe guttata HOM05D000921 ORTHO05D004782 6.0e-07 57.4 43 67.4
FAN13G0958 Fragaria x ananassa HOM05D000921 ORTHO05D004782 6.0e-07 57.4 41 70.7
Psat5g049440 Pisum sativum HOM05D000921 ORTHO05D004782 7.8e-07 57.0 41 73.2
Gorai.005G097000 Gossypium raimondii HOM05D000921 ORTHO05D004782 1.0e-06 56.6 41 70.7
DCAR_012852 Daucus carota HOM05D000921 ORTHO05D004782 1.3e-06 56.2 43 69.8
FvH4_5g34530 Fragaria vesca HOM05D000921 ORTHO05D004782 1.3e-06 56.2 41 68.3
FAN08G1747 Fragaria x ananassa HOM05D000921 ORTHO05D004782 1.3e-06 56.2 41 68.3
FAN18G1361 Fragaria x ananassa HOM05D000921 ORTHO05D004782 1.3e-06 56.2 41 68.3
Lalb_Chr23g0270001 Lupinus albus HOM05D000921 ORTHO05D004782 1.3e-06 56.2 41 70.7
Glyma.04G096100 Glycine max HOM05D000921 ORTHO05D004782 1.7e-06 55.8 41 70.7
Glyma.06G097800 Glycine max HOM05D000921 ORTHO05D004782 1.7e-06 55.8 41 68.3
Gohir.D02G086100 Gossypium hirsutum HOM05D000921 ORTHO05D004782 2.3e-06 55.5 41 68.3
Nn5g29852 Nelumbo nucifera HOM05D000921 ORTHO05D004782 2.3e-06 55.5 43 67.4
arahy.Tifrunner.gnm1.ann1.KCR83B Arachis hypogaea HOM05D000921 ORTHO05D004782 5.1e-06 54.3 42 66.7
arahy.Tifrunner.gnm1.ann1.YNEA8K Arachis hypogaea HOM05D000921 ORTHO05D004782 5.1e-06 54.3 42 66.7
Duzib116G0480 Durio zibethinus HOM05D000921 ORTHO05D004782 8.6e-06 53.5 40 67.5
Gohir.A02G078801 Gossypium hirsutum HOM05D000921 ORTHO05D004782 8.6e-06 53.5 41 68.3


User provided reference genes

Program Settings