Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.3e-62 241.5 120 100.0
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 9.6e-62 240.0 120 99.2
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.7e-61 238.0 120 98.3
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 4.8e-61 237.7 120 98.3
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 4.8e-61 237.7 120 98.3
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 5.2e-15 84.7 111 48.6
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 4.4e-14 81.6 111 47.7
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 4.4e-14 81.6 114 49.1
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 5.7e-14 81.3 118 49.2
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 5.7e-14 81.3 111 48.6
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 7.5e-14 80.9 114 47.4
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 9.8e-14 80.5 111 51.4
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.3e-13 80.1 114 46.5
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 1.3e-13 80.1 114 46.5
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 1.3e-13 80.1 111 45.9
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 1.3e-13 80.1 111 47.7
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 2.2e-13 79.3 111 46.8
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.8e-13 79.0 111 46.8
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.8e-13 79.0 111 46.8
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 2.8e-13 79.0 114 46.5
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 2.8e-13 79.0 111 47.7
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 2.8e-13 79.0 111 45.9
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 2.8e-13 79.0 111 45.9
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 2.8e-13 79.0 114 46.5
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 2.8e-13 79.0 111 48.6
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.8e-13 79.0 111 46.8
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 3.7e-13 78.6 114 45.6
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 3.7e-13 78.6 114 46.5
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 3.7e-13 78.6 114 46.5
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 4.8e-13 78.2 111 49.5
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 4.8e-13 78.2 111 45.0
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 6.3e-13 77.8 111 48.6
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 6.3e-13 77.8 111 46.8
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 6.3e-13 77.8 111 47.7
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 6.3e-13 77.8 113 46.9
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 8.3e-13 77.4 113 50.4
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 8.3e-13 77.4 111 47.7
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.3e-13 77.4 114 45.6
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.3e-13 77.4 114 45.6
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 8.3e-13 77.4 111 47.7
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 8.3e-13 77.4 114 45.6
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.1e-12 77.0 111 45.0
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 1.1e-12 77.0 111 46.8
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.1e-12 77.0 111 45.0
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 1.4e-12 76.6 111 46.8
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 1.8e-12 76.3 114 43.9
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 1.8e-12 76.3 111 47.7
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 2.4e-12 75.9 111 48.6
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.4e-12 75.9 111 45.9
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 2.4e-12 75.9 114 44.7
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 2.4e-12 75.9 111 46.8
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 3.1e-12 75.5 114 43.9
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 3.1e-12 75.5 136 41.9
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 3.1e-12 75.5 114 44.7
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 3.1e-12 75.5 111 46.8
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 3.1e-12 75.5 111 46.8
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 3.1e-12 75.5 114 43.9
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 4.1e-12 75.1 114 44.7
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 4.1e-12 75.1 114 43.9
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 4.1e-12 75.1 111 46.8
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 4.1e-12 75.1 111 46.8
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 4.1e-12 75.1 111 46.8
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 4.1e-12 75.1 111 48.6
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 4.1e-12 75.1 115 45.2
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 4.1e-12 75.1 114 43.9
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 5.4e-12 74.7 111 45.0
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 5.4e-12 74.7 111 45.9
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 5.4e-12 74.7 114 44.7
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 7.0e-12 74.3 111 45.9
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 9.1e-12 73.9 114 43.0
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 9.1e-12 73.9 111 45.0
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 9.1e-12 73.9 111 45.9
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 9.1e-12 73.9 111 47.7
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 1.2e-11 73.6 114 42.1
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 1.2e-11 73.6 114 43.0
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 1.2e-11 73.6 111 45.9
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 1.2e-11 73.6 111 44.1
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 1.6e-11 73.2 110 45.5
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 1.6e-11 73.2 114 42.1
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 1.6e-11 73.2 114 43.0
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.6e-11 73.2 111 45.9
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.6e-11 73.2 114 43.0
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.6e-11 73.2 135 40.7
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 1.6e-11 73.2 111 42.3
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 2.0e-11 72.8 114 42.1
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 2.0e-11 72.8 114 42.1
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 2.0e-11 72.8 114 42.1
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 2.0e-11 72.8 114 43.9
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 2.0e-11 72.8 111 44.1
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 2.7e-11 72.4 111 45.0
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.7e-11 72.4 114 42.1
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.7e-11 72.4 114 42.1
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 2.7e-11 72.4 111 46.8
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 2.7e-11 72.4 113 42.5
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 3.5e-11 72.0 114 42.1
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.5e-11 72.0 111 46.8
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.5e-11 72.0 111 45.0
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 3.5e-11 72.0 114 43.9
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 3.5e-11 72.0 114 43.9
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 4.5e-11 71.6 113 44.2
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 7.7e-11 70.9 114 41.2
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 7.7e-11 70.9 114 41.2
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 7.7e-11 70.9 114 41.2
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 7.7e-11 70.9 114 41.2
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 7.7e-11 70.9 114 41.2
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 7.7e-11 70.9 111 43.2
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 7.7e-11 70.9 111 43.2
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 7.7e-11 70.9 113 46.0
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 1.0e-10 70.5 114 42.1
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.0e-10 70.5 111 43.2
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 1.3e-10 70.1 142 40.1
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 1.7e-10 69.7 114 41.2
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 1.7e-10 69.7 113 43.4
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 1.7e-10 69.7 111 44.1
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 1.7e-10 69.7 114 43.0
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 2.3e-10 69.3 113 42.5
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 2.3e-10 69.3 111 39.6
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 2.9e-10 68.9 115 43.5
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.9e-10 68.9 114 40.4
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 3.8e-10 68.6 111 42.3
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 5.0e-10 68.2 157 35.7
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 5.0e-10 68.2 116 45.7
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 5.0e-10 68.2 111 45.0
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 6.6e-10 67.8 111 43.2
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 6.6e-10 67.8 111 44.1
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 2.5e-09 65.9 114 40.4
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 3.3e-09 65.5 114 40.4
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.5e-09 64.7 110 41.8
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 4.7e-08 61.6 111 41.4
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 8.0e-08 60.8 111 36.0
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 1.4e-07 60.1 36 86.1
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 1.8e-07 59.7 36 83.3
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 2.3e-07 59.3 114 36.8
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 4.0e-07 58.5 111 35.1
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.2e-07 58.2 37 81.1
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.8e-07 57.8 36 83.3
Glyma.07G158050 Glycine max HOM05D004325 ORTHO05D022134 6.8e-07 57.8 45 64.4
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.2e-06 57.0 36 83.3
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.5e-06 56.6 38 76.3
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 2.6e-06 55.8 111 40.5
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 7.5e-06 54.3 36 77.8


User provided reference genes

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