Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044418 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 1.6e-103 379.4 190 100.0
CSS0013743 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 7.8e-66 254.2 175 78.3
CSS0035662 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 7.8e-66 254.2 175 78.3
Actinidia34451 Actinidia chinensis HOM05D003657 ORTHO05D004286 2.0e-53 213.0 175 68.0
Actinidia23893 Actinidia chinensis HOM05D003657 ORTHO05D004286 2.9e-52 209.1 174 66.7
CSS0030381 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 4.9e-52 208.4 175 66.3
vmacro14588 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 3.2e-51 205.7 166 68.1
Rhsim01G0235900 Rhododendron simsii HOM05D003657 ORTHO05D004286 7.1e-51 204.5 174 64.9
Dinv28627 Davidia involucrata HOM05D003657 ORTHO05D004286 3.9e-49 198.7 176 61.4
CSS0017673 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 1.5e-45 186.8 181 60.2
Cfa011669 Carpinus fangiana HOM05D003657 ORTHO05D004286 2.6e-45 186.0 176 57.4
GSVIVG01024772001 Vitis vinifera HOM05D003657 ORTHO05D004286 7.6e-45 184.5 176 59.7
Haze_24275 Corylus avellana HOM05D003657 ORTHO05D004286 1.7e-44 183.3 176 56.8
Hma1.2p1_0863F.1_g229980 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 1.7e-44 183.3 175 60.0
CiPaw.13G079800 Carya illinoinensis HOM05D003657 ORTHO05D004286 8.4e-44 181.0 176 56.8
QL01p037650 Quercus lobata HOM05D003657 ORTHO05D004286 5.5e-43 178.3 176 55.1
CiPaw.14G060100 Carya illinoinensis HOM05D003657 ORTHO05D004286 7.1e-43 177.9 175 54.9
CSS0012712 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 2.7e-42 176.0 137 71.5
Duzib168G2233 Durio zibethinus HOM05D003657 ORTHO05D004286 2.7e-42 176.0 174 55.2
Manes.01G163000 Manihot esculenta HOM05D003657 ORTHO05D004286 3.5e-42 175.6 176 54.0
Gohir.D03G117100 Gossypium hirsutum HOM05D003657 ORTHO05D004286 4.6e-42 175.3 176 55.7
Gorai.003G123500 Gossypium raimondii HOM05D003657 ORTHO05D004286 4.6e-42 175.3 176 55.7
RcHm_v2.0_Chr5g0068951 Rosa chinensis HOM05D003657 ORTHO05D004286 4.6e-42 175.3 177 57.1
RcHm_v2.0_Chr4g0399271 Rosa chinensis HOM05D003657 ORTHO05D004286 6.0e-42 174.9 177 57.1
Duzib170G0663 Durio zibethinus HOM05D003657 ORTHO05D004286 1.3e-41 173.7 176 54.5
Thecc.09G304100 Theobroma cacao HOM05D003657 ORTHO05D004286 1.3e-41 173.7 176 54.5
DCAR_018959 Daucus carota HOM05D003657 ORTHO05D004286 3.9e-41 172.2 176 52.3
Gohir.A03G050300 Gossypium hirsutum HOM05D003657 ORTHO05D004286 6.7e-41 171.4 176 54.5
FAN16G1802 Fragaria x ananassa HOM05D003657 ORTHO05D004286 1.1e-40 170.6 177 54.8
FvH4_3g38340 Fragaria vesca HOM05D003657 ORTHO05D004286 1.9e-40 169.9 177 54.8
FAN11G3726 Fragaria x ananassa HOM05D003657 ORTHO05D004286 1.9e-40 169.9 177 54.8
Peaxi162Scf00540g00620 Petunia axillaris HOM05D003657 ORTHO05D004286 2.5e-40 169.5 167 56.3
Ca_14923_v3 Cicer arietinum L. HOM05D003657 ORTHO05D004286 5.6e-40 168.3 176 53.4
PGSC0003DMG400030351 Solanum tuberosum HOM05D003657 ORTHO05D004286 5.6e-40 168.3 177 54.2
FAN21G3798 Fragaria x ananassa HOM05D003657 ORTHO05D004286 7.4e-40 167.9 177 54.2
CANSAT54G0812 Cannabis sativa HOM05D003657 ORTHO05D004286 1.6e-39 166.8 172 54.1
FAN25G3712 Fragaria x ananassa HOM05D003657 ORTHO05D004286 1.6e-39 166.8 177 54.2
Solyc06g076860.4 Solanum lycopersicum HOM05D003657 ORTHO05D004286 2.8e-39 166.0 177 53.7
Sopen06g033250 Solanum pennellii HOM05D003657 ORTHO05D004286 2.8e-39 166.0 177 53.7
Medtr3g463490 Medicago truncatula HOM05D003657 ORTHO05D004286 1.1e-38 164.1 174 52.9
Lj6g0007931 Lotus japonicus HOM05D003657 ORTHO05D004286 1.8e-38 163.3 176 52.3
vmacro02979 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 1.8e-38 163.3 135 65.2
Nitab4.5_0000170g0210 Nicotiana tabacum HOM05D003657 ORTHO05D004286 2.4e-38 162.9 176 51.7
Nn2g13661 Nelumbo nucifera HOM05D003657 ORTHO05D004286 3.1e-38 162.5 175 51.4
CAN.G394.117 Capsicum annuum HOM05D003657 ORTHO05D004286 4.0e-38 162.2 177 52.0
Nitab4.5_0000807g0050 Nicotiana tabacum HOM05D003657 ORTHO05D004286 5.3e-38 161.8 176 51.7
Oeu045526.2 Olea europaea HOM05D003657 ORTHO05D004286 9.0e-38 161.0 176 51.7
TWI14G1047 Tripterygium wilfordii HOM05D003657 ORTHO05D004286 9.0e-38 161.0 177 53.1
Glyma.18G066900 Glycine max HOM05D003657 ORTHO05D004286 1.2e-37 160.6 176 51.1
PSO339G1362 Papaver somniferum HOM05D003657 ORTHO05D004286 1.2e-37 160.6 176 51.1
Cc01_g14050 Coffea canephora HOM05D003657 ORTHO05D004286 1.5e-37 160.2 175 53.7
Hma1.2p1_0227F.1_g096420 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 2.0e-37 159.8 175 53.7
Phvul.006G064300 Phaseolus vulgaris HOM05D003657 ORTHO05D004286 2.0e-37 159.8 176 51.1
Sabra16G0152200 Salix brachista HOM05D003657 ORTHO05D004286 2.0e-37 159.8 166 53.6
TPR.G21184 Trifolium pratense HOM05D003657 ORTHO05D004286 2.0e-37 159.8 170 52.9
VMungo0540G2171 Vigna mungo HOM05D003657 ORTHO05D004286 2.0e-37 159.8 175 52.6
Cpa.g.sc112.42 Carica papaya HOM05D003657 ORTHO05D004286 3.4e-37 159.1 166 52.4
Eucgr.B02268 Eucalyptus grandis HOM05D003657 ORTHO05D004286 3.4e-37 159.1 175 52.0
PSO384G3334 Papaver somniferum HOM05D003657 ORTHO05D004286 3.4e-37 159.1 176 50.6
MBI15_g31118_MAGBIO Magnolia biondii HOM05D003657 ORTHO05D004286 4.5e-37 158.7 171 54.4
Nitab4.5_0005502g0010 Nicotiana tabacum HOM05D003657 ORTHO05D004286 5.8e-37 158.3 169 53.8
Ciclev10030030m.g Citrus clementina HOM05D003657 ORTHO05D004286 1.0e-36 157.5 171 48.5
Lalb_Chr04g0252271 Lupinus albus HOM05D003657 ORTHO05D004286 1.0e-36 157.5 175 49.1
HanXRQChr17g0562071 Helianthus annuus HOM05D003657 ORTHO05D004286 2.9e-36 156.0 175 52.0
Prupe.6G059500 Prunus persica HOM05D003657 ORTHO05D004286 2.9e-36 156.0 176 51.7
Sed0018588 Sechium edule HOM05D003657 ORTHO05D004286 3.8e-36 155.6 175 52.6
HanXRQChr08g0229531 Helianthus annuus HOM05D003657 ORTHO05D004286 4.9e-36 155.2 175 51.4
PGR102G3249 Punica granatum HOM05D003657 ORTHO05D004286 8.4e-36 154.5 176 51.1
MD03G1072700 Malus domestica HOM05D003657 ORTHO05D004286 1.4e-35 153.7 179 49.7
Aqoxy4G02626 Aquilegia oxysepala HOM05D003657 ORTHO05D004286 7.1e-35 151.4 176 47.7
arahy.Tifrunner.gnm1.ann1.XTS0HX Arachis hypogaea HOM05D003657 ORTHO05D004286 7.1e-35 151.4 167 51.5
ClCG02G019640 Citrullus lanatus HOM05D003657 ORTHO05D004286 7.1e-35 151.4 176 51.1
Hma1.2p1_3301F.1_g335025 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 7.1e-35 151.4 166 53.0
TWI79G1454 Tripterygium wilfordii HOM05D003657 ORTHO05D004286 7.1e-35 151.4 175 49.1
MELO3C025862.2 Cucumis melo HOM05D003657 ORTHO05D004286 1.2e-34 150.6 168 52.4
Aqoxy2G02701 Aquilegia oxysepala HOM05D003657 ORTHO05D004286 2.1e-34 149.8 176 47.2
Lalb_Chr17g0345031 Lupinus albus HOM05D003657 ORTHO05D004286 2.7e-34 149.4 176 48.9
Nn4g24153 Nelumbo nucifera HOM05D003657 ORTHO05D004286 2.7e-34 149.4 175 49.1
SalBow6G0197 Salvia bowleyana HOM05D003657 ORTHO05D004286 4.6e-34 148.7 156 53.8
SGA_v2.0_scaffold28G11769 Striga asiatica HOM05D003657 ORTHO05D004286 4.6e-34 148.7 175 49.1
arahy.Tifrunner.gnm1.ann1.NA7AU5 Arachis hypogaea HOM05D003657 ORTHO05D004286 6.0e-34 148.3 167 50.9
ATR0618G109 Amborella trichopoda HOM05D003657 ORTHO05D004286 7.9e-34 147.9 176 51.1
MD11G1078800 Malus domestica HOM05D003657 ORTHO05D004286 7.9e-34 147.9 179 48.0
Migut.G00378 Erythranthe guttata HOM05D003657 ORTHO05D004286 1.0e-33 147.5 176 49.4
Migut.I00319 Erythranthe guttata HOM05D003657 ORTHO05D004286 1.0e-33 147.5 176 49.4
CsaV3_6G016310 Cucumis sativus L. HOM05D003657 ORTHO05D004286 1.8e-33 146.7 136 58.1
Lsat_1_v5_gn_9_19501 Lactuca sativa HOM05D003657 ORTHO05D004286 1.8e-33 146.7 132 58.3
Glyma.08G333800 Glycine max HOM05D003657 ORTHO05D004286 1.9e-32 143.3 161 50.9
Nitab4.5_0000010g0240 Nicotiana tabacum HOM05D003657 ORTHO05D004286 3.3e-32 142.5 126 60.3
SEGI_02229 Sequoiadendron giganteum HOM05D003657 ORTHO05D004286 4.8e-31 138.7 171 48.0
SEGI_38514 Sequoiadendron giganteum HOM05D003657 ORTHO05D004286 6.3e-31 138.3 175 46.9
HanXRQChr14g0433451 Helianthus annuus HOM05D003657 ORTHO05D004286 9.0e-30 134.4 121 59.5
THA.LOC104800725 Tarenaya hassleriana HOM05D003657 ORTHO05D004286 9.0e-30 134.4 136 51.5
AUR62020110 Chenopodium quinoa HOM05D003657 ORTHO05D004286 1.2e-29 134.0 166 46.4
Ah.08g221030 Amaranthus hybridus HOM05D003657 ORTHO05D004286 2.6e-29 132.9 174 47.1
HanXRQChr17g0551341 Helianthus annuus HOM05D003657 ORTHO05D004286 3.4e-29 132.5 171 46.8
Hund04875 Selenicereus undatus HOM05D003657 ORTHO05D004286 4.5e-29 132.1 175 45.1
Sc12g0000820 Simmondsia chinensis HOM05D003657 ORTHO05D004286 4.5e-29 132.1 175 44.6
THA.LOC104816080 Tarenaya hassleriana HOM05D003657 ORTHO05D004286 5.9e-29 131.7 136 50.7
AUR62001671 Chenopodium quinoa HOM05D003657 ORTHO05D004286 7.6e-29 131.3 166 46.4
AT1G07270 Arabidopsis thaliana HOM05D003657 ORTHO05D004286 1.3e-28 130.6 136 48.5
CARHR006990 Cardamine hirsuta HOM05D003657 ORTHO05D004286 1.3e-28 130.6 136 50.0
Carub.0001s0657 Capsella rubella HOM05D003657 ORTHO05D004286 2.2e-28 129.8 136 50.0
Aa31LG5G6800 Aethionema arabicum HOM05D003657 ORTHO05D004286 5.0e-28 128.6 136 49.3
Carub.0004s1078 Capsella rubella HOM05D003657 ORTHO05D004286 8.4e-28 127.9 151 45.7
AL4G24450 Arabidopsis lyrata HOM05D003657 ORTHO05D004286 1.4e-27 127.1 136 48.5
AT2G29680 Arabidopsis thaliana HOM05D003657 ORTHO05D004286 1.9e-27 126.7 136 49.3
CARHR123010 Cardamine hirsuta HOM05D003657 ORTHO05D004286 1.9e-27 126.7 136 48.5
Potri.001G250200 Populus trichocarpa HOM05D003657 ORTHO05D004286 1.9e-27 126.7 126 54.0
RcHm_v2.0_Chr2g0157111 Rosa chinensis HOM05D003657 ORTHO05D004286 1.9e-27 126.7 131 55.0
AL1G17420 Arabidopsis lyrata HOM05D003657 ORTHO05D004286 2.5e-27 126.3 136 47.8
BcaC01g05004 Brassica carinata HOM05D002033 ORTHO05D002181 2.5e-27 126.3 143 46.9
C03p31210 Brassica napus HOM05D002033 ORTHO05D002181 2.5e-27 126.3 143 46.9
COL.COLO4_19124 Corchorus olitorius HOM05D003657 ORTHO05D004286 2.5e-27 126.3 126 54.0
Sp4g12400 Schrenkiella parvula HOM05D003657 ORTHO05D004286 2.5e-27 126.3 136 47.8
Aa31LG5G550 Aethionema arabicum HOM05D003657 ORTHO05D004286 3.2e-27 125.9 136 48.5
A10p05840 Brassica napus HOM05D003657 ORTHO05D004286 5.5e-27 125.2 127 50.4
BraA10t42845Z Brassica rapa HOM05D003657 ORTHO05D004286 5.5e-27 125.2 127 50.4
Pp3c2_14050 Physcomitrium patens HOM05D003657 ORTHO05D004286 5.5e-27 125.2 132 50.0
BolC3t15469H Brassica oleracea HOM05D003657 ORTHO05D004286 1.2e-26 124.0 136 47.1
Thhalv10016540m.g Eutrema salsugineum HOM05D003657 ORTHO05D004286 1.6e-26 123.6 136 47.1
A03p26150 Brassica napus HOM05D002033 ORTHO05D002181 2.7e-26 122.9 150 42.7
BraA03t11830Z Brassica rapa HOM05D002033 ORTHO05D002181 2.7e-26 122.9 150 42.7
BcaC02g11054 Brassica carinata HOM05D003657 ORTHO05D004286 4.6e-26 122.1 136 46.3
Lj4C400T2 Lonicera japonica HOM05D003657 ORTHO05D004286 4.6e-26 122.1 128 57.8
unitig_0.g1519 Utricularia gibba HOM05D003657 ORTHO05D004286 6.1e-26 121.7 175 41.7
BcaB01g03143 Brassica carinata HOM05D002033 ORTHO05D002181 7.9e-26 121.3 127 48.0
Lj4A394T19 Lonicera japonica HOM05D003657 ORTHO05D004286 1.0e-25 120.9 127 55.9
C04p21110 Brassica napus HOM05D003657 ORTHO05D004286 5.1e-25 118.6 135 45.2
SHI00483 Sapria himalayana HOM05D003657 ORTHO05D004286 6.7e-25 118.2 199 38.2
CSS0010761 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 4.3e-24 115.5 83 74.7
CSS0035828 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 4.3e-24 115.5 83 74.7
EL10Ac7g16143 Beta vulgaris HOM05D003657 ORTHO05D004286 1.3e-23 114.0 135 49.6
AagrBONN_evm.TU.Sc2ySwM_228.2818 Anthoceros agrestis HOM05D003657 ORTHO05D004286 1.4e-22 110.5 131 45.8
SMO137G0247 Selaginella moellendorffii HOM05D003657 ORTHO05D004286 1.2e-21 107.5 162 38.9
arahy.Tifrunner.gnm1.ann1.RGQY4W Arachis hypogaea HOM05D003657 ORTHO05D004286 1.3e-20 104.0 116 48.3
C05p05340 Brassica napus HOM05D003657 ORTHO05D004286 1.7e-20 103.6 131 44.3
Psat5g159760 Pisum sativum HOM05D003657 ORTHO05D004286 8.5e-20 101.3 107 50.5
HPP92_015512 Vanilla planifolia HOM05D003657 ORTHO05D004286 8.5e-20 101.3 133 42.9
CBR_g34218 Chara braunii HOM05D003657 ORTHO05D004286 1.1e-19 100.9 132 41.7
Lj2A1080T42 Lonicera japonica HOM05D003657 ORTHO05D004286 3.2e-19 99.4 127 48.0
Os01g0856000 Oryza sativa ssp. japonica HOM05D003657 ORTHO05D004286 3.2e-19 99.4 131 41.2
Zm00001eb367100 Zea mays HOM05D003657 ORTHO05D004286 3.2e-19 99.4 131 41.2
Zm00001eb147490 Zea mays HOM05D003657 ORTHO05D004286 5.5e-19 98.6 135 40.7
CBR_g22272 Chara braunii HOM05D003657 ORTHO05D004286 7.2e-19 98.2 142 38.0
BolC5t29306H Brassica oleracea HOM05D003657 ORTHO05D004286 4.6e-18 95.5 77 58.4
Mapoly0042s0007 Marchantia polymorpha HOM05D003657 ORTHO05D004286 7.9e-18 94.7 139 40.3
A05p15700 Brassica napus HOM05D003657 ORTHO05D004286 1.7e-15 87.0 82 47.6
ECA247G3640 Erigeron canadensis HOM05D003657 ORTHO05D004286 2.8e-15 86.3 157 37.6
HanXRQChr08g0210871 Helianthus annuus HOM05D003657 ORTHO05D004286 1.8e-14 83.6 105 46.7
MCO07G225 Micromonas commoda HOM05D003657 ORTHO05D004286 2.6e-13 79.7 137 34.3
RcHm_v2.0_Chr1g0327861 Rosa chinensis HOM05D003657 ORTHO05D004286 8.5e-12 74.7 82 50.0
BraA05t20483Z Brassica rapa HOM05D003657 ORTHO05D004286 1.2e-10 70.9 94 38.3
vmacro19103 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 4.7e-10 68.9 64 59.4
arahy.Tifrunner.gnm1.ann1.T11USP Arachis hypogaea HOM05D003657 ORTHO05D004286 4.4e-08 62.4 66 51.5
RcHm_v2.0_Chr4g0430511 Rosa chinensis HOM05D003657 ORTHO05D004286 1.3e-07 60.8 81 39.5
Thecc.10G071600 Theobroma cacao HOM05D003657 ORTHO05D004286 1.7e-07 60.5 84 44.0
ECA247G2752 Erigeron canadensis HOM05D003657 ORTHO05D004286 4.8e-07 58.9 70 45.7
ECA247G3569 Erigeron canadensis HOM05D000942 ORTHO05D000918 2.4e-06 56.6 32 78.1


User provided reference genes

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