Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044415 Camellia sinensis var. sinensis HOM05D005080 ORTHO05D002680 1.3e-49 199.5 111 100.0
CSS0004193 Camellia sinensis var. sinensis HOM05D005080 ORTHO05D002680 7.6e-29 130.6 103 69.9
CSS0006739 Camellia sinensis var. sinensis HOM05D005080 ORTHO05D002680 7.6e-29 130.6 103 69.9
Rhsim11G0094800 Rhododendron simsii HOM05D005080 ORTHO05D002680 5.5e-27 124.4 104 64.4
vmacro01559 Vaccinium macrocarpon HOM05D005080 ORTHO05D002680 2.7e-26 122.1 104 62.5
Actinidia35525 Actinidia chinensis HOM05D005080 ORTHO05D002680 6.7e-25 117.5 112 68.8
Dinv24438 Davidia involucrata HOM05D005080 ORTHO05D002680 8.7e-25 117.1 103 64.1
Cc02_g34980 Coffea canephora HOM05D005080 ORTHO05D002680 1.6e-23 112.8 101 61.4
Dinv30882 Davidia involucrata HOM05D005080 ORTHO05D002680 2.8e-23 112.1 107 68.2
Ca_10168_v3 Cicer arietinum L. HOM05D005080 ORTHO05D002680 3.4e-21 105.1 103 69.9
ECA234G0011 Erigeron canadensis HOM05D005080 ORTHO05D002680 5.8e-21 104.4 97 59.8
Medtr1g084000 Medicago truncatula HOM05D005080 ORTHO05D002680 7.6e-21 104.0 103 66.0
Glyma.10G147400 Glycine max HOM05D005080 ORTHO05D002680 1.0e-20 103.6 101 68.3
Nitab4.5_0000155g0030 Nicotiana tabacum HOM05D005080 ORTHO05D002680 1.3e-20 103.2 103 60.2
TPR.G34915 Trifolium pratense HOM05D005080 ORTHO05D002680 1.3e-20 103.2 103 67.0
TAR362G1134 Trochodendron aralioides HOM05D005080 ORTHO05D002680 1.3e-20 103.2 101 59.4
CiPaw.07G029300 Carya illinoinensis HOM05D005080 ORTHO05D002680 1.7e-20 102.8 103 60.2
Haze_04068 Corylus avellana HOM05D005080 ORTHO05D002680 1.7e-20 102.8 108 63.0
TPR.G25211 Trifolium pratense HOM05D005080 ORTHO05D002680 1.7e-20 102.8 103 64.1
CANSAT80G1801 Cannabis sativa HOM05D005080 ORTHO05D002680 2.2e-20 102.4 90 62.2
Hma1.2p1_0008F-1.1_g005640 Hydrangea macrophylla HOM05D005080 ORTHO05D002680 2.9e-20 102.1 108 63.9
Lj5g0010805 Lotus japonicus HOM05D005080 ORTHO05D002680 3.8e-20 101.7 115 54.8
Cfa006699 Carpinus fangiana HOM05D005080 ORTHO05D002680 4.9e-20 101.3 108 62.0
GSVIVG01031233001 Vitis vinifera HOM05D005080 ORTHO05D002680 4.9e-20 101.3 111 64.0
QL06p011711 Quercus lobata HOM05D005080 ORTHO05D002680 1.4e-19 99.8 104 55.8
Lalb_Chr02g0147831 Lupinus albus HOM05D005080 ORTHO05D002680 4.2e-19 98.2 101 60.4
QL03p013481 Quercus lobata HOM05D005080 ORTHO05D002680 4.2e-19 98.2 108 57.4
QL03p040025 Quercus lobata HOM05D005080 ORTHO05D002680 4.2e-19 98.2 108 57.4
Manes.08G111700 Manihot esculenta HOM05D005080 ORTHO05D002680 5.5e-19 97.8 99 63.6
Lsat_1_v5_gn_5_103961 Lactuca sativa HOM05D005080 ORTHO05D002680 9.3e-19 97.1 85 61.2
MBI19_g09323_MAGBIO Magnolia biondii HOM05D005080 ORTHO05D002680 9.3e-19 97.1 103 55.3
Phvul.007G201000 Phaseolus vulgaris HOM05D005080 ORTHO05D002680 9.3e-19 97.1 103 64.1
QL06p011739 Quercus lobata HOM05D005080 ORTHO05D002680 9.3e-19 97.1 106 53.8
VMungo0720G3125 Vigna mungo HOM05D005080 ORTHO05D002680 9.3e-19 97.1 55 89.1
EL10Ac3g05465 Beta vulgaris HOM05D005080 ORTHO05D002680 1.6e-18 96.3 84 60.7
Nitab4.5_0003894g0020 Nicotiana tabacum HOM05D005080 ORTHO05D002680 1.6e-18 96.3 103 57.3
MSTRG.3863 Avicennia marina HOM05D005080 ORTHO05D002680 2.1e-18 95.9 105 56.2
Peaxi162Scf00484g00214 Petunia axillaris HOM05D005080 ORTHO05D002680 2.1e-18 95.9 101 56.4
Peaxi162Scf01208g00140 Petunia axillaris HOM05D005080 ORTHO05D002680 2.1e-18 95.9 101 56.4
MBI19_g07241_MAGBIO Magnolia biondii HOM05D005080 ORTHO05D002680 4.6e-18 94.7 103 54.4
Hund11962 Selenicereus undatus HOM05D005080 ORTHO05D002680 1.0e-17 93.6 84 59.5
Psat6g152200 Pisum sativum HOM05D005080 ORTHO05D002680 1.3e-17 93.2 104 64.4
CAN.G625.12 Capsicum annuum HOM05D005080 ORTHO05D002680 1.8e-17 92.8 109 50.5
arahy.Tifrunner.gnm1.ann1.6BZ3LL Arachis hypogaea HOM05D005080 ORTHO05D002680 2.3e-17 92.4 103 64.1
Cpa.g.sc48.156 Carica papaya HOM05D005080 ORTHO05D002680 2.3e-17 92.4 102 57.8
HanXRQChr10g0294491 Helianthus annuus HOM05D005080 ORTHO05D002680 2.3e-17 92.4 56 80.4
AUR62041400 Chenopodium quinoa HOM05D005080 ORTHO05D002680 3.0e-17 92.0 83 59.0
SGA_v2.0_scaffold18G08397 Striga asiatica HOM05D005080 ORTHO05D002680 3.0e-17 92.0 90 61.1
TWI56G0821 Tripterygium wilfordii HOM05D005080 ORTHO05D002680 3.0e-17 92.0 89 59.6
PGSC0003DMG400012652 Solanum tuberosum HOM05D005080 ORTHO05D002680 3.9e-17 91.7 105 53.3
COL.COLO4_04158 Corchorus olitorius HOM05D005080 ORTHO05D002680 6.7e-17 90.9 56 80.4
Thecc.05G322200 Theobroma cacao HOM05D005080 ORTHO05D002680 6.7e-17 90.9 106 62.3
Sabra13G0007700 Salix brachista HOM05D005080 ORTHO05D002680 8.7e-17 90.5 53 83.0
arahy.Tifrunner.gnm1.ann1.DD48CX Arachis hypogaea HOM05D005080 ORTHO05D002680 1.1e-16 90.1 103 63.1
AUR62016127 Chenopodium quinoa HOM05D005080 ORTHO05D002680 1.1e-16 90.1 87 56.3
Aqoxy2G03866 Aquilegia oxysepala HOM05D005080 ORTHO05D002680 1.5e-16 89.7 103 52.4
Migut.G00046 Erythranthe guttata HOM05D005080 ORTHO05D002680 1.5e-16 89.7 107 51.4
Potri.013G009100 Populus trichocarpa HOM05D005080 ORTHO05D002680 1.5e-16 89.7 53 83.0
PGR083G2900 Punica granatum HOM05D005080 ORTHO05D002680 1.5e-16 89.7 88 54.5
DCAR_025280 Daucus carota HOM05D005080 ORTHO05D002680 1.9e-16 89.4 122 47.5
Duzib177G0226 Durio zibethinus HOM05D005080 ORTHO05D002680 1.9e-16 89.4 106 56.6
Eucgr.H03287 Eucalyptus grandis HOM05D005080 ORTHO05D002680 1.9e-16 89.4 84 57.1
Glyma.20G098100 Glycine max HOM05D005080 ORTHO05D002680 1.9e-16 89.4 103 61.2
Ah.04g154650 Amaranthus hybridus HOM05D005080 ORTHO05D002680 2.5e-16 89.0 101 57.4
Oeu019968.1 Olea europaea HOM05D005080 ORTHO05D002680 2.5e-16 89.0 89 57.3
THA.LOC104816888 Tarenaya hassleriana HOM05D005080 ORTHO05D002680 2.5e-16 89.0 100 56.0
MELO3C004191.2 Cucumis melo HOM05D005080 ORTHO05D002680 3.3e-16 88.6 114 48.2
CsaV3_2G007020 Cucumis sativus L. HOM05D005080 ORTHO05D002680 3.3e-16 88.6 114 48.2
Duzib106G0715 Durio zibethinus HOM05D005080 ORTHO05D002680 4.3e-16 88.2 55 80.0
Gohir.A11G272900 Gossypium hirsutum HOM05D005080 ORTHO05D002680 4.3e-16 88.2 56 75.0
Gohir.D11G283100 Gossypium hirsutum HOM05D005080 ORTHO05D002680 4.3e-16 88.2 56 76.8
Gorai.007G305900 Gossypium raimondii HOM05D005080 ORTHO05D002680 4.3e-16 88.2 56 75.0
QL03p014030 Quercus lobata HOM05D005080 ORTHO05D002680 4.3e-16 88.2 107 61.7
SalBow6G6408 Salvia bowleyana HOM05D005080 ORTHO05D002680 4.3e-16 88.2 103 51.5
FAN09G1903 Fragaria x ananassa HOM05D005080 ORTHO05D002680 5.7e-16 87.8 47 83.0
TWI36G1328 Tripterygium wilfordii HOM05D005080 ORTHO05D002680 5.7e-16 87.8 44 93.2
Gohir.A11G273000 Gossypium hirsutum HOM05D005080 ORTHO05D002680 9.7e-16 87.0 45 91.1
Gorai.007G306000 Gossypium raimondii HOM05D005080 ORTHO05D002680 9.7e-16 87.0 45 91.1
Oeu032023.1 Olea europaea HOM05D005080 ORTHO05D002680 1.6e-15 86.3 90 55.6
Gohir.D11G283200 Gossypium hirsutum HOM05D005080 ORTHO05D002680 2.2e-15 85.9 45 88.9
ClCG02G014980 Citrullus lanatus HOM05D005080 ORTHO05D002680 2.8e-15 85.5 106 49.1
FvH4_6g07400 Fragaria vesca HOM05D005080 ORTHO05D002680 2.8e-15 85.5 45 84.4
FAN02G4361 Fragaria x ananassa HOM05D005080 ORTHO05D002680 2.8e-15 85.5 45 84.4
FAN14G1760 Fragaria x ananassa HOM05D005080 ORTHO05D002680 2.8e-15 85.5 45 84.4
Lalb_Chr06g0167471 Lupinus albus HOM05D005080 ORTHO05D002680 2.8e-15 85.5 45 88.9
Prupe.6G313500 Prunus persica HOM05D005080 ORTHO05D002680 2.8e-15 85.5 45 86.7
RcHm_v2.0_Chr3g0457001 Rosa chinensis HOM05D005080 ORTHO05D002680 2.8e-15 85.5 45 84.4
Sopen02g030590 Solanum pennellii HOM05D005080 ORTHO05D002680 2.8e-15 85.5 114 49.1
BcaC09g49559 Brassica carinata HOM05D005080 ORTHO05D002680 3.7e-15 85.1 56 76.8
A01p27440 Brassica napus HOM05D005080 ORTHO05D002680 3.7e-15 85.1 56 76.8
C01p35300 Brassica napus HOM05D005080 ORTHO05D002680 3.7e-15 85.1 56 76.8
BolC1t03487H Brassica oleracea HOM05D005080 ORTHO05D002680 3.7e-15 85.1 56 76.8
BraA01t02883Z Brassica rapa HOM05D005080 ORTHO05D002680 3.7e-15 85.1 56 76.8
MD04G1193400 Malus domestica HOM05D005080 ORTHO05D002680 3.7e-15 85.1 45 88.9
Aa31LG1G5960 Aethionema arabicum HOM05D005080 ORTHO05D002680 6.3e-15 84.3 55 76.4
BcaB04g20161 Brassica carinata HOM05D005080 ORTHO05D002680 1.1e-14 83.6 98 46.9
FAN05G0620 Fragaria x ananassa HOM05D005080 ORTHO05D002680 1.1e-14 83.6 43 86.0
Sp2g06450 Schrenkiella parvula HOM05D005080 ORTHO05D002680 1.1e-14 83.6 105 46.7
Solyc02g085920.3 Solanum lycopersicum HOM05D005080 ORTHO05D002680 1.1e-14 83.6 56 73.2
Thhalv10023712m.g Eutrema salsugineum HOM05D005080 ORTHO05D002680 1.4e-14 83.2 55 76.4
Duzib128G1506 Durio zibethinus HOM05D005080 ORTHO05D002680 2.4e-14 82.4 91 61.5
Ciclev10002575m.g Citrus clementina HOM05D005080 ORTHO05D002680 4.1e-14 81.6 113 54.0
PSO170G3135 Papaver somniferum HOM05D005080 ORTHO05D002680 6.9e-14 80.9 53 73.6
SalBow8G3275 Salvia bowleyana HOM05D005080 ORTHO05D002680 6.9e-14 80.9 43 86.0
PSO357G0168 Papaver somniferum HOM05D005080 ORTHO05D002680 9.0e-14 80.5 43 81.4
Aqoxy2G02773 Aquilegia oxysepala HOM05D005080 ORTHO05D002680 2.0e-13 79.3 97 49.5
CARHR055230 Cardamine hirsuta HOM05D005080 ORTHO05D002680 2.6e-13 79.0 106 43.4
Sc25g0003340 Simmondsia chinensis HOM05D005080 ORTHO05D002680 2.6e-13 79.0 54 74.1
AL1G66100 Arabidopsis lyrata HOM05D005080 ORTHO05D002680 1.3e-12 76.6 100 49.0
AT1G56420 Arabidopsis thaliana HOM05D005080 ORTHO05D002680 1.3e-12 76.6 100 48.0
RcHm_v2.0_Chr5g0001621 Rosa chinensis HOM05D005080 ORTHO05D002680 1.3e-12 76.6 45 75.6
Carub.0002s0773 Capsella rubella HOM05D005080 ORTHO05D002680 3.8e-12 75.1 100 49.0
Sed0010078 Sechium edule HOM05D005080 ORTHO05D002680 5.0e-12 74.7 106 44.3
CDE05G2119 Ceratophyllum demersum HOM05D005080 ORTHO05D002680 6.5e-12 74.3 59 64.4
CDE11G1091 Ceratophyllum demersum HOM05D005080 ORTHO05D002680 6.5e-12 74.3 105 43.8
unitig_0.g2584 Utricularia gibba HOM05D005080 ORTHO05D002680 1.4e-11 73.2 42 81.0
ATR0706G213 Amborella trichopoda HOM05D005080 ORTHO05D002680 2.1e-10 69.3 99 45.5
HPP92_019389 Vanilla planifolia HOM05D005080 ORTHO05D002680 4.6e-10 68.2 104 45.2
Zm00001eb137010 Zea mays HOM05D005080 ORTHO05D002680 4.6e-10 68.2 38 81.6
PSO210G1547 Papaver somniferum HOM05D005080 ORTHO05D002680 6.1e-10 67.8 106 46.2
PSO761G0685 Papaver somniferum HOM05D005080 ORTHO05D002680 7.9e-10 67.4 110 45.5
Os12g0560600 Oryza sativa ssp. japonica HOM05D005080 ORTHO05D002680 3.0e-09 65.5 56 55.4
SEGI_39060 Sequoiadendron giganteum HOM05D005080 ORTHO05D002680 2.8e-07 58.9 42 64.3
Peaxi162Scf00484g00215 Petunia axillaris HOM05D005080 ORTHO05D002680 3.7e-07 58.5 99 51.5
Lju926A9G32 Lonicera japonica HOM05D005080 ORTHO05D002680 1.1e-06 57.0 31 87.1
QL03p014812 Quercus lobata HOM05D001340 ORTHO05D025918 1.8e-06 56.2 30 90.0


User provided reference genes

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