Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044347 Camellia sinensis var. sinensis HOM05D000040 ORTHO05D111946 7.0e-119 430.6 217 100.0
CSS0002527 Camellia sinensis var. sinensis HOM05D000040 ORTHO05D000267 3.6e-22 109.4 76 76.3
Actinidia29328 Actinidia chinensis HOM05D000040 ORTHO05D000267 9.1e-10 68.2 56 57.1
PGSC0003DMG400044361 Solanum tuberosum HOM05D000040 ORTHO05D000267 9.1e-10 68.2 55 60.0
Nitab4.5_0004477g0010 Nicotiana tabacum HOM05D000040 ORTHO05D000267 1.5e-09 67.4 73 50.7
Nn1g09231 Nelumbo nucifera HOM05D000040 ORTHO05D000267 7.7e-09 65.1 60 55.0
Nitab4.5_0000063g0380 Nicotiana tabacum HOM05D000040 ORTHO05D000267 1.7e-08 63.9 66 51.5
ECA246G5042 Erigeron canadensis HOM05D000040 ORTHO05D000267 2.9e-08 63.2 44 68.2
Peaxi162Scf00445g00017 Petunia axillaris HOM05D000040 ORTHO05D000267 3.8e-08 62.8 56 55.4
RcHm_v2.0_Chr1g0342861 Rosa chinensis HOM05D000040 ORTHO05D000267 5.0e-08 62.4 49 59.2
Nitab4.5_0000063g0370 Nicotiana tabacum HOM05D000040 ORTHO05D000267 6.5e-08 62.0 57 57.9
Nitab4.5_0004477g0060 Nicotiana tabacum HOM05D000040 ORTHO05D000267 6.5e-08 62.0 62 54.8
RcHm_v2.0_Chr1g0343021 Rosa chinensis HOM05D000040 ORTHO05D000267 8.5e-08 61.6 74 48.6
Solyc08g005830.1 Solanum lycopersicum HOM05D000040 ORTHO05D000267 8.5e-08 61.6 44 65.9
TWI34G1678 Tripterygium wilfordii HOM05D000040 ORTHO05D000267 8.5e-08 61.6 77 39.0
FAN28G0288 Fragaria x ananassa HOM05D000040 ORTHO05D025592 1.4e-07 60.8 111 41.4
RhsimUnG0104700 Rhododendron simsii HOM05D000040 ORTHO05D000267 1.4e-07 60.8 49 61.2
RcHm_v2.0_Chr1g0343031 Rosa chinensis HOM05D000040 ORTHO05D000267 1.4e-07 60.8 49 59.2
FvH4_7g07650 Fragaria vesca HOM05D000040 ORTHO05D000267 1.9e-07 60.5 49 59.2
FAN10G3201 Fragaria x ananassa HOM05D000040 ORTHO05D000267 1.9e-07 60.5 49 61.2
HanXRQChr05g0163401 Helianthus annuus HOM05D000040 ORTHO05D000267 1.9e-07 60.5 46 63.0
Peaxi162Scf00045g00129 Petunia axillaris HOM05D000040 ORTHO05D000267 1.9e-07 60.5 76 46.1
Dinv09434 Davidia involucrata HOM05D001222 ORTHO05D000267 2.5e-07 60.1 57 49.1
Lsat_1_v5_gn_6_106100 Lactuca sativa HOM05D000040 ORTHO05D000267 2.5e-07 60.1 51 60.8
Nitab4.5_0004181g0020 Nicotiana tabacum HOM05D000040 ORTHO05D000267 2.5e-07 60.1 59 52.5
CAN.G561.3 Capsicum annuum HOM05D000040 ORTHO05D000267 3.2e-07 59.7 48 60.4
Peaxi162Scf00045g01234 Petunia axillaris HOM05D000040 ORTHO05D000267 3.2e-07 59.7 56 55.4
CAN.G561.4 Capsicum annuum HOM05D000040 ORTHO05D000267 4.2e-07 59.3 45 62.2
CANSAT25G0304 Cannabis sativa HOM05D000040 ORTHO05D000267 5.5e-07 58.9 62 45.2
Peaxi162Scf00130g00014 Petunia axillaris HOM05D000040 ORTHO05D000267 5.5e-07 58.9 73 46.6
Prupe.5G017100 Prunus persica HOM05D000040 ORTHO05D000267 7.2e-07 58.5 75 41.3
Sed0018302 Sechium edule HOM05D000040 ORTHO05D000267 7.2e-07 58.5 52 57.7
Solyc08g074917.1 Solanum lycopersicum HOM05D000040 ORTHO05D000267 9.4e-07 58.2 52 53.8
PGSC0003DMG400037503 Solanum tuberosum HOM05D000040 ORTHO05D000267 1.2e-06 57.8 53 54.7
CAN.G561.6 Capsicum annuum HOM05D000040 ORTHO05D000267 1.6e-06 57.4 55 52.7
Cfa003688 Carpinus fangiana HOM05D000040 ORTHO05D000267 1.6e-06 57.4 49 53.1
Cfa003689 Carpinus fangiana HOM05D000040 ORTHO05D000267 1.6e-06 57.4 49 53.1
PGR119G2383 Punica granatum HOM05D000040 ORTHO05D000267 1.6e-06 57.4 74 41.9
Sed0006523 Sechium edule HOM05D000040 ORTHO05D000267 1.6e-06 57.4 76 43.4
AUR62012250 Chenopodium quinoa HOM05D000040 ORTHO05D000267 2.1e-06 57.0 73 43.8
GSVIVG01036930001 Vitis vinifera HOM05D000040 ORTHO05D000267 2.1e-06 57.0 58 48.3
MSTRG.13041 Avicennia marina HOM05D000040 ORTHO05D000267 2.7e-06 56.6 50 56.0
COL.COLO4_28408 Corchorus olitorius HOM05D000040 ORTHO05D000267 2.7e-06 56.6 80 38.8
PGR042G1863 Punica granatum HOM05D000040 ORTHO05D000267 2.7e-06 56.6 61 49.2
Aa31LG3G7720 Aethionema arabicum HOM05D000040 ORTHO05D000267 3.6e-06 56.2 51 52.9
FAN23G0938 Fragaria x ananassa HOM05D000040 ORTHO05D000267 3.6e-06 56.2 57 54.4
MD06G1021800 Malus domestica HOM05D000040 ORTHO05D000267 3.6e-06 56.2 63 46.0
CAN.G22.2 Capsicum annuum HOM05D000040 ORTHO05D000267 4.7e-06 55.8 51 54.9
Migut.A00499 Erythranthe guttata HOM05D000040 ORTHO05D000267 4.7e-06 55.8 91 33.0
MD07G1079900 Malus domestica HOM05D000040 ORTHO05D000267 4.7e-06 55.8 74 40.5
Nn1g09236 Nelumbo nucifera HOM05D000040 ORTHO05D000267 4.7e-06 55.8 57 47.4
Peaxi162Scf00045g01223 Petunia axillaris HOM05D000040 ORTHO05D000267 4.7e-06 55.8 44 61.4
Rhsim12G0072000 Rhododendron simsii HOM05D000040 ORTHO05D000267 4.7e-06 55.8 66 45.5
RcHm_v2.0_Chr2g0115131 Rosa chinensis HOM05D000040 ORTHO05D000267 4.7e-06 55.8 76 42.1
Sopen08g023550 Solanum pennellii HOM05D000040 ORTHO05D000267 4.7e-06 55.8 52 51.9
PGSC0003DMG401015714 Solanum tuberosum HOM05D000040 ORTHO05D000267 4.7e-06 55.8 52 51.9
Cc05_g05480 Coffea canephora HOM05D000040 ORTHO05D000267 6.1e-06 55.5 82 37.8
MD16G1288400 Malus domestica HOM05D000040 ORTHO05D000267 6.1e-06 55.5 52 48.1
Nn3g19193 Nelumbo nucifera HOM05D000040 ORTHO05D000267 6.1e-06 55.5 75 41.3
Peaxi162Scf00907g00224 Petunia axillaris HOM05D000040 ORTHO05D000267 6.1e-06 55.5 40 60.0
QL04p052791 Quercus lobata HOM05D000040 ORTHO05D000267 6.1e-06 55.5 59 44.1
QL04p053075 Quercus lobata HOM05D000040 ORTHO05D000267 6.1e-06 55.5 54 46.3
QL09p031607 Quercus lobata HOM05D000040 ORTHO05D000267 6.1e-06 55.5 59 44.1
TAR636G1606 Trochodendron aralioides HOM05D000040 ORTHO05D000267 6.1e-06 55.5 59 52.5
TAR636G1636 Trochodendron aralioides HOM05D000040 ORTHO05D000267 6.1e-06 55.5 59 52.5
TAR636G2870 Trochodendron aralioides HOM05D000040 ORTHO05D000267 6.1e-06 55.5 59 52.5
AUR62022883 Chenopodium quinoa HOM05D000040 ORTHO05D000267 7.9e-06 55.1 74 45.9
Dinv43527 Davidia involucrata HOM05D000040 ORTHO05D000267 7.9e-06 55.1 72 40.3
TPR.G34144 Trifolium pratense HOM05D000040 ORTHO05D000267 7.9e-06 55.1 69 42.0


User provided reference genes

Program Settings