Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 1.8e-72 275.8 136 100.0
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 1.4e-37 159.8 137 64.2
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 2.5e-34 149.1 170 50.6
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 3.7e-33 145.2 137 59.1
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 6.2e-33 144.4 138 58.0
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 8.2e-33 144.1 137 57.7
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 1.4e-32 143.3 137 57.7
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 1.4e-32 143.3 137 57.7
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 1.8e-32 142.9 137 56.9
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.8e-32 142.9 132 58.3
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 2.4e-32 142.5 132 58.3
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 3.1e-32 142.1 132 56.8
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 3.1e-32 142.1 132 58.3
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 3.1e-32 142.1 138 55.8
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 5.3e-32 141.4 131 57.3
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 9.0e-32 140.6 132 57.6
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 9.0e-32 140.6 143 54.5
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.2e-31 140.2 132 57.6
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 1.2e-31 140.2 138 57.2
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 1.5e-31 139.8 137 54.7
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 7.6e-31 137.5 132 56.8
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 1.0e-30 137.1 138 55.1
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 1.3e-30 136.7 132 55.3
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 2.2e-30 136.0 138 53.6
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 2.2e-30 136.0 138 53.6
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 2.2e-30 136.0 138 53.6
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 3.8e-30 135.2 137 53.3
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 3.8e-30 135.2 132 56.8
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 4.9e-30 134.8 138 52.9
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 4.9e-30 134.8 138 54.3
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 6.5e-30 134.4 132 54.5
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 6.5e-30 134.4 128 57.8
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 6.5e-30 134.4 132 55.3
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 8.4e-30 134.0 140 53.6
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.1e-29 133.7 138 55.1
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 1.1e-29 133.7 134 53.0
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 3.2e-29 132.1 132 55.3
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 3.2e-29 132.1 138 55.1
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 3.2e-29 132.1 137 53.3
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 7.1e-29 131.0 133 53.4
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 7.1e-29 131.0 133 53.4
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 1.2e-28 130.2 130 53.8
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 1.6e-28 129.8 137 51.8
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.6e-28 129.8 138 54.3
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 1.6e-28 129.8 134 51.5
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.0e-27 127.1 132 52.3
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 1.0e-27 127.1 137 49.6
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 1.3e-27 126.7 138 49.3
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.3e-27 126.7 133 51.9
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 1.8e-27 126.3 131 53.4
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 3.0e-27 125.6 134 50.7
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 3.9e-27 125.2 131 51.9
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 5.1e-27 124.8 132 50.0
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 5.1e-27 124.8 132 50.8
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 5.1e-27 124.8 132 50.8
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 5.1e-27 124.8 132 50.8
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 6.7e-27 124.4 132 50.8
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 8.7e-27 124.0 140 48.6
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 8.7e-27 124.0 133 51.1
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 8.7e-27 124.0 132 50.0
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 1.1e-26 123.6 132 50.8
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 1.1e-26 123.6 132 50.0
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 1.1e-26 123.6 132 50.0
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 1.1e-26 123.6 132 50.0
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 1.1e-26 123.6 132 50.0
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.1e-26 123.6 126 54.0
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.1e-26 123.6 126 54.0
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 1.9e-26 122.9 144 46.5
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 2.5e-26 122.5 132 48.5
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 3.3e-26 122.1 132 49.2
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 3.3e-26 122.1 132 50.8
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 4.3e-26 121.7 132 50.0
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 5.7e-26 121.3 139 47.5
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 5.7e-26 121.3 132 49.2
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 7.4e-26 120.9 125 53.6
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 7.4e-26 120.9 134 49.3
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 7.4e-26 120.9 128 52.3
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 7.4e-26 120.9 132 51.5
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 9.7e-26 120.6 132 50.0
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 9.7e-26 120.6 137 48.2
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 1.3e-25 120.2 137 48.9
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 1.6e-25 119.8 128 50.0
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 1.6e-25 119.8 128 50.0
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.6e-25 119.8 167 41.3
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.2e-25 119.4 125 52.8
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 2.8e-25 119.0 132 49.2
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 2.8e-25 119.0 72 69.4
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 3.7e-25 118.6 131 50.4
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 3.7e-25 118.6 137 48.2
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 3.7e-25 118.6 126 50.0
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 3.7e-25 118.6 126 50.0
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 4.8e-25 118.2 64 81.2
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 1.4e-24 116.7 130 49.2
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 1.4e-24 116.7 130 49.2
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.4e-24 116.7 130 49.2
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 1.4e-24 116.7 130 49.2
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 1.4e-24 116.7 137 46.7
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 1.8e-24 116.3 124 50.8
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 6.9e-24 114.4 124 50.0
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 1.2e-23 113.6 136 45.6
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 1.2e-23 113.6 124 50.8
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 2.0e-23 112.8 124 50.0
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 3.4e-23 112.1 124 50.0
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 3.4e-23 112.1 64 76.6
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 4.5e-23 111.7 124 49.2
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 4.5e-23 111.7 121 51.2
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 5.9e-23 111.3 137 44.5
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 7.6e-23 110.9 129 48.8
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.3e-22 110.2 124 48.4
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 6.5e-22 107.8 124 48.4
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 9.4e-21 104.0 124 46.8
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 2.7e-20 102.4 139 43.9
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 3.0e-19 99.0 129 41.9
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 8.8e-19 97.4 132 44.7
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.7e-17 93.2 109 51.4
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 6.9e-16 87.8 139 41.0
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 2.2e-14 82.8 62 62.9
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 2.2e-14 82.8 69 53.6
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 3.8e-14 82.0 69 53.6
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 5.0e-14 81.6 137 38.7
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 6.1e-12 74.7 133 39.1
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 1.0e-11 73.9 133 39.1
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.0e-11 73.9 94 47.9
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 1.8e-11 73.2 103 40.8
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 3.0e-11 72.4 123 38.2
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 3.9e-11 72.0 109 39.4
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 3.9e-11 72.0 64 59.4
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.6e-10 69.3 51 60.8
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 5.7e-10 68.2 115 37.4
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 9.7e-10 67.4 122 33.6
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.2e-09 66.2 106 40.6
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 2.8e-09 65.9 66 48.5
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 4.1e-08 62.0 93 41.9
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 4.1e-08 62.0 117 30.8
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 7.0e-08 61.2 132 34.8


User provided reference genes

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