Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.2e-50 202.2 120 100.0
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.7e-40 168.7 160 70.6
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 5.3e-36 154.5 160 61.2
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.3e-21 106.7 124 63.7
CSS0001263 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 4.1e-20 101.7 105 72.4
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 1.8e-15 86.3 81 65.4
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 2.3e-15 85.9 65 80.0
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 1.5e-14 83.2 144 41.7
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 1.5e-14 83.2 144 41.7
CSS0015607 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.0e-14 82.8 126 51.6
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 4.4e-14 81.6 84 57.1
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 1.3e-13 80.1 131 42.0
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.7e-13 79.7 68 64.7
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 1.7e-13 79.7 78 61.5
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 2.2e-13 79.3 88 56.8
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 2.2e-13 79.3 144 40.3
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 2.2e-13 79.3 81 55.6
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 2.8e-13 79.0 73 69.9
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 3.7e-13 78.6 84 57.1
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 8.3e-13 77.4 81 58.0
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.4e-12 76.6 86 62.8
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.4e-12 76.6 86 62.8
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 3.1e-12 75.5 68 63.2
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 4.1e-12 75.1 126 42.9
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 5.4e-12 74.7 118 44.9
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 5.4e-12 74.7 79 51.9
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 5.4e-12 74.7 71 70.4
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 7.0e-12 74.3 78 67.9
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.2e-11 73.6 81 51.9
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 2.0e-11 72.8 52 71.2
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 2.7e-11 72.4 54 68.5
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 2.7e-11 72.4 64 57.8
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 4.5e-11 71.6 161 36.0
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 4.5e-11 71.6 78 55.1
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 5.9e-11 71.2 74 54.1
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 7.7e-11 70.9 74 51.4
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 7.7e-11 70.9 74 51.4
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 7.7e-11 70.9 83 62.7
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 7.7e-11 70.9 65 60.0
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 1.0e-10 70.5 44 77.3
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 1.0e-10 70.5 44 77.3
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 1.0e-10 70.5 81 53.1
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 1.3e-10 70.1 50 70.0
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 1.7e-10 69.7 64 59.4
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 2.3e-10 69.3 44 75.0
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 2.3e-10 69.3 70 61.4
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 2.3e-10 69.3 66 66.7
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 2.9e-10 68.9 154 33.1
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 2.9e-10 68.9 66 74.2
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 2.9e-10 68.9 78 50.0
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 5.0e-10 68.2 90 61.1
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 5.0e-10 68.2 68 57.4
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.0e-10 68.2 76 51.3
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.0e-10 68.2 76 51.3
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.0e-10 68.2 76 51.3
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.0e-10 68.2 65 60.0
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.0e-10 68.2 65 60.0
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 5.0e-10 68.2 65 60.0
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 5.0e-10 68.2 54 57.4
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 6.6e-10 67.8 60 60.0
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 6.6e-10 67.8 52 69.2
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 6.6e-10 67.8 47 72.3
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 6.6e-10 67.8 81 53.1
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 6.6e-10 67.8 85 58.8
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 8.6e-10 67.4 85 52.9
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 8.6e-10 67.4 76 52.6
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 8.6e-10 67.4 78 56.4
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 8.6e-10 67.4 78 56.4
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 8.6e-10 67.4 38 78.9
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 8.6e-10 67.4 85 48.2
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 1.1e-09 67.0 78 47.4
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 1.5e-09 66.6 46 69.6
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.5e-09 66.6 85 45.9
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 1.5e-09 66.6 78 55.1
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 1.9e-09 66.2 84 65.5
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 5.5e-09 64.7 54 63.0
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 7.2e-09 64.3 36 83.3
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 9.5e-09 63.9 72 55.6
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.2e-08 63.5 80 57.5
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.2e-08 63.5 80 57.5
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 1.6e-08 63.2 60 60.0
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 1.6e-08 63.2 70 52.9
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 2.1e-08 62.8 67 74.6
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 2.1e-08 62.8 37 78.4
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 2.8e-08 62.4 83 47.0
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 3.6e-08 62.0 47 68.1
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 4.7e-08 61.6 56 62.5
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 4.7e-08 61.6 56 62.5
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 4.7e-08 61.6 54 53.7
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 4.7e-08 61.6 56 62.5
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 4.7e-08 61.6 84 44.0
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 4.7e-08 61.6 85 43.5
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 6.1e-08 61.2 47 68.1
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 6.1e-08 61.2 47 68.1
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 6.1e-08 61.2 52 59.6
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 6.1e-08 61.2 47 68.1
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 6.1e-08 61.2 52 59.6
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 6.1e-08 61.2 47 66.0
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 8.0e-08 60.8 47 66.0
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 8.0e-08 60.8 58 56.9
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 8.0e-08 60.8 47 66.0
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 8.0e-08 60.8 71 52.1
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.0e-07 60.5 50 62.0
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 1.4e-07 60.1 92 46.7
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 1.4e-07 60.1 57 61.4
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 1.8e-07 59.7 36 75.0
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 3.0e-07 58.9 110 40.0
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 4.0e-07 58.5 36 72.2
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 4.0e-07 58.5 50 60.0
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 4.0e-07 58.5 46 65.2
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 8.9e-07 57.4 86 46.5
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.2e-06 57.0 58 55.2
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 1.5e-06 56.6 39 64.1
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.5e-06 56.6 46 65.2
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 2.0e-06 56.2 77 53.2
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 2.6e-06 55.8 62 51.6
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 2.6e-06 55.8 80 56.2
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 2.6e-06 55.8 150 31.3
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 4.4e-06 55.1 43 65.1
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 4.4e-06 55.1 43 65.1
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 4.4e-06 55.1 51 52.9
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 5.7e-06 54.7 59 50.8
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 5.7e-06 54.7 39 66.7
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 7.5e-06 54.3 150 32.7


User provided reference genes

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