Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 7.8e-100 367.1 178 100.0
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 3.6e-89 331.6 178 87.6
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 3.5e-84 315.1 178 83.1
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 8.6e-83 310.5 178 80.9
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 7.3e-82 307.4 178 79.8
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 9.5e-82 307.0 176 81.8
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 1.2e-81 306.6 178 79.8
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 3.6e-81 305.1 173 81.5
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 6.2e-81 304.3 177 79.7
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 1.1e-80 303.5 178 79.8
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 1.4e-80 303.1 178 78.7
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 2.3e-80 302.4 176 78.4
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 3.1e-80 302.0 178 77.5
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 8.9e-80 300.4 178 78.1
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 8.9e-80 300.4 178 77.0
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 9.9e-79 297.0 178 75.8
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 2.9e-78 295.4 178 75.3
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 6.4e-78 294.3 178 76.4
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 8.3e-78 293.9 160 85.6
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 2.4e-77 292.4 175 74.9
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 3.2e-77 292.0 178 75.3
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 4.1e-77 291.6 176 77.8
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 4.1e-77 291.6 178 74.2
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 5.4e-77 291.2 178 76.4
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.2e-76 290.0 175 74.9
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 1.6e-76 289.7 176 75.0
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 3.5e-76 288.5 160 84.4
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 3.5e-76 288.5 178 74.7
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 3.5e-76 288.5 178 75.3
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 6.0e-76 287.7 168 79.8
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 1.7e-75 286.2 178 75.8
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 2.3e-75 285.8 160 82.5
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 3.9e-75 285.0 178 73.0
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 8.6e-75 283.9 178 74.7
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 1.9e-74 282.7 178 75.3
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 4.3e-74 281.6 178 74.2
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 5.6e-74 281.2 174 74.7
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 5.6e-74 281.2 178 72.5
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 1.6e-73 279.6 178 74.2
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 1.6e-73 279.6 170 76.5
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 3.6e-73 278.5 162 78.4
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 1.1e-72 276.9 178 70.8
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 3.1e-72 275.4 162 87.0
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 3.1e-72 275.4 176 71.0
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 1.2e-71 273.5 177 73.4
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 3.4e-71 271.9 205 67.3
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 3.4e-71 271.9 178 69.7
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 4.4e-71 271.6 178 70.2
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 1.4e-69 266.5 178 71.9
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 3.2e-69 265.4 171 71.3
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 3.2e-69 265.4 163 77.3
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 5.4e-69 264.6 159 76.1
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 7.1e-69 264.2 172 69.8
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 2.1e-68 262.7 160 72.5
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 2.7e-68 262.3 171 69.6
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 2.7e-68 262.3 192 65.1
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 6.0e-68 261.2 171 70.8
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 6.0e-68 261.2 171 70.2
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 6.0e-68 261.2 171 70.2
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 1.0e-67 260.4 171 70.2
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 1.3e-67 260.0 160 75.0
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.3e-67 260.0 170 68.2
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 2.3e-67 259.2 171 70.8
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.0e-67 258.8 171 70.2
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 3.9e-67 258.5 171 69.6
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.9e-67 258.5 170 67.6
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 5.1e-67 258.1 177 67.2
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 6.6e-67 257.7 170 68.8
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 8.6e-67 257.3 173 69.4
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 8.6e-67 257.3 170 70.0
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 1.1e-66 256.9 171 69.0
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.1e-66 256.9 171 70.2
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.5e-66 256.5 171 69.6
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 1.9e-66 256.1 170 67.6
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 2.5e-66 255.8 170 68.2
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 5.6e-66 254.6 171 69.0
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 1.6e-65 253.1 171 68.4
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 1.6e-65 253.1 168 69.0
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.6e-65 253.1 170 67.6
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 2.8e-65 252.3 170 66.5
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 4.7e-65 251.5 170 66.5
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 4.7e-65 251.5 168 67.9
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 4.7e-65 251.5 168 67.9
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 4.7e-65 251.5 168 67.9
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 8.1e-65 250.8 168 68.5
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 1.4e-64 250.0 173 68.2
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 2.4e-64 249.2 171 66.1
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 3.1e-64 248.8 168 67.9
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 3.1e-64 248.8 174 67.2
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 4.0e-64 248.4 176 64.8
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 5.2e-64 248.1 164 70.1
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 9.0e-64 247.3 170 64.1
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.2e-63 246.9 188 63.8
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 1.2e-63 246.9 168 67.3
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 3.4e-63 245.4 165 69.7
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 7.6e-63 244.2 171 64.3
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 3.8e-62 241.9 144 78.5
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 3.8e-62 241.9 170 63.5
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 3.8e-62 241.9 170 63.5
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 8.4e-62 240.7 164 69.5
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 1.4e-61 240.0 163 68.7
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 1.4e-61 240.0 178 64.6
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 5.4e-61 238.0 163 68.1
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 9.3e-61 237.3 160 68.8
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 1.6e-60 236.5 160 68.1
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 3.5e-60 235.3 172 64.5
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 4.6e-60 235.0 168 66.1
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 4.6e-60 235.0 176 64.8
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 7.8e-60 234.2 167 66.5
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 3.9e-59 231.9 171 62.6
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 8.7e-59 230.7 230 51.7
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.1e-58 230.3 158 67.1
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 2.5e-58 229.2 171 60.8
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 2.5e-58 229.2 171 60.8
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 2.5e-58 229.2 171 60.8
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 7.3e-58 227.6 172 64.5
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 1.6e-57 226.5 152 67.1
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 1.6e-57 226.5 171 60.8
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 1.6e-57 226.5 171 60.8
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 2.1e-57 226.1 153 69.9
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 4.8e-57 224.9 160 65.6
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 6.2e-57 224.6 178 65.2
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 1.1e-56 223.8 180 61.7
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 6.9e-56 221.1 169 62.7
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 9.9e-55 217.2 152 68.4
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 9.9e-55 217.2 153 68.0
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 1.9e-53 213.0 176 56.8
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 2.3e-51 206.1 146 67.1
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 1.1e-50 203.8 167 56.9
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 3.3e-50 202.2 182 53.8
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 1.6e-49 199.9 169 56.8
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 2.1e-49 199.5 119 74.8
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 2.8e-49 199.1 170 58.2
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 1.1e-48 197.2 172 53.5
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 3.8e-46 188.7 120 74.2
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 1.4e-45 186.8 178 55.6
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.1e-42 177.2 116 69.8
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 5.6e-42 174.9 124 67.7
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 8.4e-38 161.0 153 49.7
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 2.7e-36 156.0 102 70.6
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 2.8e-33 146.0 86 75.6
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 6.9e-32 141.4 163 46.6
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 4.5e-31 138.7 163 46.0
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 4.5e-31 138.7 163 46.0
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 1.3e-30 137.1 180 45.0
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 1.4e-29 133.7 171 45.0
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 7.9e-28 127.9 163 41.1
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 6.7e-27 124.8 96 61.5
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 3.7e-25 119.0 160 41.2
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 2.6e-23 112.8 78 65.4
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 4.5e-23 112.1 170 41.8
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 1.1e-21 107.5 75 64.0
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 5.5e-21 105.1 69 68.1
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 2.1e-20 103.2 168 38.7
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 6.1e-20 101.7 74 62.2
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 3.7e-17 92.4 154 35.1
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 6.3e-17 91.7 149 36.2
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 6.3e-17 91.7 148 35.1
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 6.9e-16 88.2 192 34.4
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 1.9e-13 80.1 49 77.6
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.8e-11 73.6 48 72.9
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 8.8e-11 71.2 48 66.7
FAN23G1236 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.5e-10 70.5 47 66.0
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 7.0e-08 61.6 45 55.6
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 1.6e-07 60.5 39 66.7


User provided reference genes

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