Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 3.5e-186 654.8 334 100.0
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 3.6e-183 644.8 334 97.9
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 1.3e-148 530.0 355 74.4
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 3.2e-139 498.8 334 72.8
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 6.3e-135 484.6 289 77.5
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 8.2e-135 484.2 437 58.6
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 2.4e-134 482.6 285 78.2
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 5.3e-134 481.5 283 78.4
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 5.8e-133 478.0 290 76.2
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 5.8e-133 478.0 283 78.4
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 8.4e-132 474.2 289 75.8
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 1.4e-131 473.4 281 78.3
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 5.5e-131 471.5 283 75.3
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 7.2e-131 471.1 283 75.3
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 9.3e-131 470.7 283 75.3
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 1.2e-130 470.3 286 75.2
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 1.6e-130 469.9 280 77.5
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 4.6e-130 468.4 291 76.6
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 7.9e-130 467.6 284 78.5
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 3.0e-129 465.7 280 76.4
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 3.0e-129 465.7 281 77.6
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 3.9e-129 465.3 325 69.2
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 5.1e-129 464.9 279 77.1
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 8.7e-129 464.2 281 77.2
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 8.7e-129 464.2 281 77.2
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 8.7e-129 464.2 281 76.9
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 1.9e-128 463.0 286 75.9
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 4.3e-128 461.8 291 72.5
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 5.7e-128 461.5 334 68.6
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 2.2e-127 459.5 333 67.9
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 3.7e-127 458.8 301 70.4
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 1.4e-126 456.8 286 75.2
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 4.1e-126 455.3 288 74.0
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 5.3e-126 454.9 283 76.3
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 1.2e-125 453.8 274 76.3
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 5.9e-125 451.4 277 76.2
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 1.7e-124 449.9 289 73.7
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 3.8e-124 448.7 303 70.0
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 6.5e-124 448.0 281 74.4
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 1.1e-123 447.2 312 68.3
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 2.5e-123 446.0 283 73.5
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 2.5e-123 446.0 291 72.9
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 3.2e-123 445.7 281 74.0
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 3.2e-123 445.7 276 75.0
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 4.2e-123 445.3 293 72.4
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 1.2e-122 443.7 284 73.9
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 1.2e-122 443.7 282 73.4
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 2.7e-122 442.6 282 73.4
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 3.6e-122 442.2 286 73.4
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 8.8e-121 437.6 285 72.6
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 1.1e-120 437.2 281 72.6
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 2.0e-120 436.4 290 72.8
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 2.5e-120 436.0 285 72.3
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 9.7e-120 434.1 281 72.6
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 6.3e-119 431.4 290 70.0
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 8.2e-119 431.0 285 72.3
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 1.4e-118 430.3 285 71.2
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 5.3e-118 428.3 293 70.6
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 1.5e-117 426.8 284 71.5
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 5.9e-117 424.9 290 69.3
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 1.3e-116 423.7 283 70.3
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 2.9e-116 422.5 275 70.5
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 8.5e-116 421.0 301 66.8
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 1.4e-115 420.2 284 69.4
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 9.4e-115 417.5 274 72.6
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 1.2e-114 417.2 289 69.9
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 1.6e-114 416.8 286 69.6
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 2.7e-114 416.0 282 68.8
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 4.7e-114 415.2 341 62.5
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 6.1e-114 414.8 282 69.1
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 7.9e-114 414.5 288 69.8
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 2.0e-112 409.8 318 64.2
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 2.6e-112 409.5 289 69.2
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 4.4e-112 408.7 319 63.9
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 5.7e-112 408.3 288 69.1
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 4.1e-110 402.1 277 70.0
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 2.6e-109 399.4 275 70.5
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 2.0e-104 383.3 277 65.3
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 1.8e-102 376.7 287 62.7
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 8.5e-100 367.9 323 59.1
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 6.8e-97 358.2 292 58.2
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 1.5e-96 357.1 281 60.1
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 4.4e-96 355.5 296 56.8
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 1.7e-95 353.6 249 68.7
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 5.9e-93 345.1 298 53.7
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 5.4e-86 322.0 275 56.4
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 1.7e-84 317.0 180 84.4
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 7.3e-83 311.6 224 68.3
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 6.1e-82 308.5 190 76.3
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 2.4e-78 296.6 214 66.8
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 7.0e-78 295.0 169 78.7
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 1.1e-75 287.7 167 80.8
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 8.9e-73 278.1 165 77.6
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 2.0e-72 276.9 162 78.4
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 2.3e-68 263.5 281 51.6
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 2.8e-66 256.5 279 45.2
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 3.1e-65 253.1 179 65.4
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 3.7e-63 246.1 283 41.7
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 3.2e-62 243.0 290 43.8
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 8.1e-58 228.4 164 67.7
Gohir.D11G237100 Gossypium hirsutum HOM05D006927 ORTHO05D009065 4.6e-53 212.6 119 80.7
unitig_26.g8847 Utricularia gibba HOM05D006927 ORTHO05D009065 5.1e-52 209.1 127 74.0
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 2.5e-35 153.7 73 86.3
PRCOL_00000683 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 2.6e-32 143.7 283 34.6
MCO02G275 Micromonas commoda HOM05D006927 ORTHO05D044296 2.2e-31 140.6 323 30.7
Actinidia34774 Actinidia chinensis HOM05D006927 ORTHO05D009065 3.8e-31 139.8 81 74.1
Cre01.g025150 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D044296 3.0e-28 130.2 335 28.4
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 5.1e-28 129.4 60 93.3
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 1.0e-23 115.2 78 64.1
HPP92_025520 Vanilla planifolia HOM05D006927 ORTHO05D009065 1.2e-21 108.2 155 43.9
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 7.9e-21 105.5 136 44.9
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 5.1e-12 76.3 262 24.4
CBR_g4745 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-11 73.6 68 47.1
PRCOL_00002844 Prasinoderma coloniale HOM05D006927 ORTHO05D049054 3.7e-10 70.1 131 34.4
MCO12G090 Micromonas commoda HOM05D006927 ORTHO05D049054 1.8e-09 67.8 335 23.9
C09p59490 Brassica napus HOM05D000005 ORTHO05D040849 9.1e-09 65.5 160 31.2
Actinidia31734 Actinidia chinensis HOM05D006927 ORTHO05D056651 1.0e-07 62.0 113 45.1


User provided reference genes

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