Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.2e-25 117.1 54 100.0
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.4e-22 107.1 53 92.5
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 9.8e-22 105.9 51 94.1
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 9.8e-22 105.9 51 94.1
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.7e-21 105.1 53 90.6
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 8.3e-21 102.8 51 90.2
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 1.1e-20 102.4 51 92.2
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.1e-20 102.4 51 92.2
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.1e-20 102.4 51 92.2
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 1.1e-20 102.4 51 92.2
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 1.1e-20 102.4 51 92.2
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 1.1e-20 102.4 51 92.2
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 1.4e-20 102.1 51 90.2
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.8e-20 101.7 51 92.2
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.8e-20 101.7 51 92.2
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 2.4e-20 101.3 51 90.2
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 2.4e-20 101.3 51 90.2
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 2.4e-20 101.3 51 90.2
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 2.4e-20 101.3 51 90.2
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 2.4e-20 101.3 51 90.2
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 3.1e-20 100.9 51 90.2
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 3.1e-20 100.9 51 88.2
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 4.1e-20 100.5 51 90.2
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 9.1e-20 99.4 53 88.7
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 1.2e-19 99.0 51 84.3
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 1.6e-19 98.6 51 88.2
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 1.6e-19 98.6 51 86.3
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 3.5e-19 97.4 51 90.2
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 3.5e-19 97.4 51 88.2
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 3.5e-19 97.4 51 84.3
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 3.5e-19 97.4 51 82.4
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 4.5e-19 97.1 51 86.3
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 4.5e-19 97.1 51 84.3
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 5.9e-19 96.7 51 82.4
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 7.7e-19 96.3 51 86.3
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 7.7e-19 96.3 51 84.3
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 7.7e-19 96.3 51 84.3
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 7.7e-19 96.3 51 84.3
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 7.7e-19 96.3 51 84.3
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 7.7e-19 96.3 51 84.3
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 7.7e-19 96.3 51 84.3
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 7.7e-19 96.3 51 84.3
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 7.7e-19 96.3 51 84.3
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 1.0e-18 95.9 51 84.3
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 1.3e-18 95.5 51 86.3
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 1.7e-18 95.1 51 80.4
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.7e-18 95.1 51 82.4
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 2.3e-18 94.7 51 80.4
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 2.3e-18 94.7 51 86.3
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 2.3e-18 94.7 51 84.3
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 2.9e-18 94.4 51 84.3
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 3.8e-18 94.0 51 82.4
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 5.0e-18 93.6 51 80.4
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 5.0e-18 93.6 51 84.3
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 6.6e-18 93.2 51 82.4
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 6.6e-18 93.2 51 78.4
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 8.6e-18 92.8 51 82.4
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 1.1e-17 92.4 51 82.4
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 1.1e-17 92.4 51 80.4
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.5e-17 92.0 51 84.3
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.5e-17 92.0 51 84.3
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.5e-17 92.0 51 84.3
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 1.9e-17 91.7 51 82.4
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 1.9e-17 91.7 51 82.4
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 1.9e-17 91.7 51 78.4
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 2.5e-17 91.3 51 78.4
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 2.5e-17 91.3 51 80.4
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 3.3e-17 90.9 51 80.4
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 4.2e-17 90.5 51 78.4
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 4.2e-17 90.5 51 76.5
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 5.5e-17 90.1 51 80.4
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 7.2e-17 89.7 51 84.3
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 7.2e-17 89.7 51 78.4
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 9.5e-17 89.4 51 78.4
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 9.5e-17 89.4 51 78.4
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 9.5e-17 89.4 51 78.4
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 1.6e-16 88.6 51 78.4
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 1.6e-16 88.6 51 78.4
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 2.1e-16 88.2 51 78.4
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 2.1e-16 88.2 51 78.4
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 2.1e-16 88.2 51 78.4
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 2.1e-16 88.2 51 80.4
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 2.8e-16 87.8 51 74.5
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 3.6e-16 87.4 51 74.5
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 3.6e-16 87.4 51 76.5
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 3.6e-16 87.4 51 80.4
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 4.7e-16 87.0 51 74.5
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 6.1e-16 86.7 45 84.4
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 6.1e-16 86.7 51 74.5
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 1.0e-15 85.9 51 74.5
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 1.4e-15 85.5 51 72.5
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 1.4e-15 85.5 51 74.5
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 1.4e-15 85.5 51 78.4
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 1.8e-15 85.1 51 72.5
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 1.8e-15 85.1 51 72.5
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 1.8e-15 85.1 51 72.5
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.3e-15 84.7 53 81.1
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 2.3e-15 84.7 51 72.5
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 3.0e-15 84.3 51 74.5
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 3.0e-15 84.3 51 74.5
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 4.0e-15 84.0 51 74.5
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 4.0e-15 84.0 51 74.5
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 4.0e-15 84.0 51 74.5
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 5.2e-15 83.6 50 72.0
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 8.9e-15 82.8 51 76.5
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 1.2e-14 82.4 51 72.5
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 2.0e-14 81.6 51 70.6
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 2.6e-14 81.3 51 68.6
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 5.7e-14 80.1 51 74.5
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 1.7e-13 78.6 51 66.7
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 1.7e-13 78.6 51 66.7
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 1.7e-13 78.6 51 66.7
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 1.7e-13 78.6 51 66.7
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 4.9e-13 77.0 51 64.7
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 8.3e-13 76.3 51 68.6
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 8.3e-13 76.3 51 68.6
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 1.1e-12 75.9 51 62.7
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 1.1e-12 75.9 40 82.5
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 1.1e-12 75.9 51 68.6
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 3.2e-12 74.3 51 70.6
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 1.2e-11 72.4 51 64.7
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 4.5e-11 70.5 51 64.7
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 4.5e-11 70.5 33 93.9
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 5.9e-11 70.1 51 66.7
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 1.0e-10 69.3 37 78.4
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 3.9e-10 67.4 51 66.7
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 3.9e-10 67.4 51 66.7
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 5.0e-10 67.0 41 70.7
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 1.5e-09 65.5 51 60.8
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 1.0e-07 59.3 52 55.8
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 1.4e-07 58.9 51 56.9
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 4.0e-07 57.4 51 54.9
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 2.0e-06 55.1 51 51.0
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 9.8e-06 52.8 36 61.1


User provided reference genes

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