Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035854 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 0.0e+00 1945.6 990 100.0
CSS0044230 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 0.0e+00 1945.6 990 100.0
Actinidia03134 Actinidia chinensis HOM05D006627 ORTHO05D007753 4.4e-237 825.5 994 53.7
Rhsim03G0190100 Rhododendron simsii HOM05D006627 ORTHO05D007753 2.1e-234 816.6 1003 53.0
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 5.1e-233 812.0 1004 53.6
Actinidia31835 Actinidia chinensis HOM05D006627 ORTHO05D007753 1.8e-230 803.5 989 52.3
Rhsim07G0129400 Rhododendron simsii HOM05D006627 ORTHO05D007753 2.2e-228 796.6 1006 52.1
Rhsim07G0129200 Rhododendron simsii HOM05D006627 ORTHO05D007753 1.3e-223 780.8 1002 50.9
Dinv28394 Davidia involucrata HOM05D006627 ORTHO05D007753 4.9e-220 768.8 1052 49.5
vmacro06638 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 4.9e-220 768.8 1003 50.5
vmacro06637 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 5.4e-219 765.4 1005 51.1
Lj1C1004T5 Lonicera japonica HOM05D006627 ORTHO05D007753 4.9e-151 539.7 1136 37.7
GSVIVG01028875001 Vitis vinifera HOM05D006627 ORTHO05D007753 2.8e-130 470.7 1175 36.3
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 4.2e-102 377.1 1291 31.4
Prupe.2G299600 Prunus persica HOM05D006627 ORTHO05D007753 5.8e-96 356.7 1106 31.9
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 3.8e-95 354.0 1086 32.2
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.1e-94 352.4 1305 29.7
Cc02_g02490 Coffea canephora HOM05D006627 ORTHO05D007753 8.7e-92 342.8 1144 32.1
Dinv35243 Davidia involucrata HOM05D006627 ORTHO05D007753 1.9e-91 341.7 509 44.6
Oeu060456.3 Olea europaea HOM05D006627 ORTHO05D007753 7.4e-91 339.7 1069 33.1
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 2.3e-84 318.2 343 55.1
Duzib205G1471 Durio zibethinus HOM05D006627 ORTHO05D007753 1.9e-78 298.5 1091 30.5
Peaxi162Scf00444g00008 Petunia axillaris HOM05D006627 ORTHO05D007753 1.0e-76 292.7 1059 32.9
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 6.7e-76 290.0 1058 31.2
RcHm_v2.0_Chr1g0378101 Rosa chinensis HOM05D006627 ORTHO05D007753 6.7e-76 290.0 1098 32.1
CAN.G236.7 Capsicum annuum HOM05D006627 ORTHO05D007753 1.9e-75 288.5 1086 30.0
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.6e-74 285.4 1271 29.4
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 4.8e-74 283.9 1146 29.9
FAN03G1328 Fragaria x ananassa HOM05D006627 ORTHO05D007753 2.6e-72 278.1 1084 31.1
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.3e-71 275.8 1256 28.9
MD07G1277900 Malus domestica HOM05D006627 ORTHO05D007753 1.7e-71 275.4 1099 29.8
FAN03G3330 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.9e-70 271.9 1084 31.4
Thecc.03G182600 Theobroma cacao HOM05D006627 ORTHO05D007753 7.2e-70 270.0 1145 28.8
FAN06G3118 Fragaria x ananassa HOM05D006627 ORTHO05D007753 2.1e-69 268.5 1096 30.6
Peaxi162Scf00618g00717 Petunia axillaris HOM05D006627 ORTHO05D007753 2.7e-69 268.1 1086 29.9
FAN10G1355 Fragaria x ananassa HOM05D006627 ORTHO05D007753 4.6e-69 267.3 1088 31.2
FvH4_7g30110 Fragaria vesca HOM05D006627 ORTHO05D007753 1.8e-68 265.4 1094 30.8
FAN10G1026 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.8e-68 265.4 1088 30.9
FAN06G3804 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.1e-67 262.7 1096 30.7
PGSC0003DMG400010123 Solanum tuberosum HOM05D006627 ORTHO05D007753 7.4e-67 260.0 1083 29.7
MD01G1207000 Malus domestica HOM05D006627 ORTHO05D007753 9.7e-67 259.6 1208 28.8
FAN01G2627 Fragaria x ananassa HOM05D006627 ORTHO05D007753 2.2e-66 258.5 1094 30.9
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 5.3e-65 253.8 1250 27.5
Duzib084G0535 Durio zibethinus HOM05D006627 ORTHO05D007753 1.5e-64 252.3 1115 29.1
Solyc03g025150.4 Solanum lycopersicum HOM05D006627 ORTHO05D007753 1.5e-64 252.3 1070 29.5
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 2.0e-64 251.9 1201 27.8
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 5.9e-64 250.4 1214 27.3
TWI23G0587 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 7.7e-64 250.0 1053 28.9
SalBow4G0794 Salvia bowleyana HOM05D006627 ORTHO05D007753 8.5e-63 246.5 1086 29.1
Gohir.A10G234800 Gossypium hirsutum HOM05D006627 ORTHO05D007753 7.2e-62 243.4 1021 28.9
Ciclev10004200m.g Citrus clementina HOM05D006627 ORTHO05D007753 1.2e-61 242.7 1107 29.1
Gorai.011G285600 Gossypium raimondii HOM05D006627 ORTHO05D007753 1.6e-61 242.3 1019 28.8
Gohir.D10G247200 Gossypium hirsutum HOM05D006627 ORTHO05D007753 2.7e-61 241.5 1019 28.5
Atru.chr1.386 Acer truncatum HOM05D006627 ORTHO05D007753 1.0e-60 239.6 1107 29.3
Cfa012198 Carpinus fangiana HOM05D006627 ORTHO05D007753 1.4e-60 239.2 1223 28.0
Sopen03g004000 Solanum pennellii HOM05D006627 ORTHO05D007753 1.4e-60 239.2 1077 29.2
TWI14G0178 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 2.3e-60 238.4 1053 28.4
Atru.chr1.369 Acer truncatum HOM05D006627 ORTHO05D007753 5.2e-60 237.3 1086 30.0
Atru.ctg97_1.2 Acer truncatum HOM05D006627 ORTHO05D007753 5.2e-60 237.3 1086 30.0
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 5.2e-60 237.3 1177 27.9
COL.COLO4_28015 Corchorus olitorius HOM05D006627 ORTHO05D007753 6.7e-60 236.9 1030 29.0
Haze_08819 Corylus avellana HOM05D006627 ORTHO05D007753 5.7e-59 233.8 1227 28.6
Sabra04G0052500 Salix brachista HOM05D006627 ORTHO05D007753 6.3e-58 230.3 1100 28.8
Potri.004G079000 Populus trichocarpa HOM05D006627 ORTHO05D007753 2.4e-57 228.4 1174 28.7
DCAR_009389 Daucus carota HOM05D006627 ORTHO05D007753 5.3e-57 227.3 1075 28.7
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 9.1e-57 226.5 1327 26.9
Hma1.2p1_0327F.1_g126380 Hydrangea macrophylla HOM05D006627 ORTHO05D007753 1.6e-56 225.7 416 42.8
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 2.2e-55 221.9 1134 28.8
Potri.017G142600 Populus trichocarpa HOM05D006627 ORTHO05D007753 8.5e-55 219.9 1085 29.9
MSTRG.27091 Avicennia marina HOM05D006627 ORTHO05D007753 1.6e-53 215.7 1070 28.1
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 3.6e-53 214.5 1114 27.6
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 2.0e-51 208.8 1089 28.7
MSTRG.8718 Avicennia marina HOM05D006627 ORTHO05D007753 4.4e-51 207.6 1074 29.4
Cpa.g.sc107.97 Carica papaya HOM05D006627 ORTHO05D007753 1.4e-49 202.6 1017 27.4
ECA233G6261 Erigeron canadensis HOM05D006627 ORTHO05D007753 4.0e-44 184.5 1093 26.2
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 3.4e-43 181.4 887 27.4
Manes.02G019000 Manihot esculenta HOM05D006627 ORTHO05D007753 1.3e-42 179.5 1074 27.2
Migut.F00307 Erythranthe guttata HOM05D006627 ORTHO05D007753 7.0e-41 173.7 1031 28.9
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 1.0e-39 169.9 1053 27.2
Hund11448 Selenicereus undatus HOM05D006627 ORTHO05D007753 2.1e-37 162.2 1151 25.0
EL10Ac3g05437 Beta vulgaris HOM05D006627 ORTHO05D007753 1.2e-35 156.4 1217 25.1
ECA232G3189 Erigeron canadensis HOM05D006627 ORTHO05D007753 3.7e-34 151.4 999 26.6
HanXRQChr13g0394821 Helianthus annuus HOM05D006627 ORTHO05D007753 4.9e-34 151.0 1060 25.2
Actinidia14583 Actinidia chinensis HOM05D006627 ORTHO05D007753 1.8e-33 149.1 356 34.0
AUR62031403 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.8e-33 149.1 1236 24.8
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 3.1e-33 148.3 1151 25.9
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 2.7e-32 145.2 1077 25.3
Ah.07g206700 Amaranthus hybridus HOM05D006627 ORTHO05D007753 5.0e-31 141.0 1235 25.9
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.9e-30 139.0 1092 24.5
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 4.3e-30 137.9 1087 24.7
Lsat_1_v5_gn_6_5180 Lactuca sativa HOM05D006627 ORTHO05D007753 2.6e-27 128.6 1070 25.2
Ah.07g196520 Amaranthus hybridus HOM05D006627 ORTHO05D007753 2.4e-25 122.1 1024 26.0
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 1.2e-24 119.8 1041 25.8
TWI60G0847 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 1.7e-23 115.9 930 24.6
EL10Ac5g12811 Beta vulgaris HOM05D006627 ORTHO05D007753 3.9e-23 114.8 331 33.8
Atru.chr9.2147 Acer truncatum HOM05D006627 ORTHO05D007753 4.0e-20 104.8 751 24.1
THA.LOC104811963 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 2.6e-19 102.1 409 29.8
THA.LOC104800273 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 7.5e-19 100.5 396 28.5
CDE07G1237 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 6.4e-18 97.4 703 25.3
HPP92_025630 Vanilla planifolia HOM05D006627 ORTHO05D007753 1.1e-17 96.7 1176 24.5
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 4.6e-16 91.3 396 27.8
CDE04G0350 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 1.3e-15 89.7 1070 23.9
Lsat_1_v5_gn_9_57440 Lactuca sativa HOM05D006627 ORTHO05D007753 5.0e-15 87.8 331 28.7
Sp6g14700 Schrenkiella parvula HOM05D008661 ORTHO05D010872 8.6e-15 87.0 309 28.5
Sp7g23680 Schrenkiella parvula HOM05D008661 ORTHO05D010872 8.6e-15 87.0 380 28.9
Carub.0008s1265 Capsella rubella HOM05D008661 ORTHO05D010872 5.6e-14 84.3 426 27.7
AL8G26990 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 7.3e-14 84.0 230 33.9
Atru.chr9.2148 Acer truncatum HOM05D006627 ORTHO05D007753 9.5e-14 83.6 212 35.4
AL7G27440 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 2.8e-13 82.0 338 28.4
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 3.6e-13 81.6 377 26.8
BcaB03g12481 Brassica carinata HOM05D008661 ORTHO05D010872 8.1e-13 80.5 375 26.7
Aa31LG3G8880 Aethionema arabicum HOM05D008661 ORTHO05D010872 1.4e-12 79.7 326 27.6
HanXRQChr09g0252481 Helianthus annuus HOM05D029832 ORTHO05D007753 5.2e-12 77.8 601 23.8
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 6.8e-12 77.4 336 28.9
CARHR233070 Cardamine hirsuta HOM05D008661 ORTHO05D010872 6.8e-12 77.4 365 28.8
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 8.9e-12 77.0 409 28.4
Carub.0007s1533 Capsella rubella HOM05D008661 ORTHO05D010872 1.5e-11 76.3 324 26.9
unitig_46.g18802 Utricularia gibba HOM05D006627 ORTHO05D007753 2.0e-11 75.9 1020 22.0
C08p09590 Brassica napus HOM05D008661 ORTHO05D010872 3.4e-11 75.1 294 26.9
A08p21040 Brassica napus HOM05D008661 ORTHO05D010872 7.5e-11 73.9 295 27.1
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 7.5e-11 73.9 295 27.1
A08p21060 Brassica napus HOM05D008661 ORTHO05D010872 9.9e-11 73.6 296 27.7
BcaC07g38204 Brassica carinata HOM05D008661 ORTHO05D010872 1.3e-10 73.2 295 26.8
BolC8t48627H Brassica oleracea HOM05D008661 ORTHO05D010872 1.3e-10 73.2 295 26.8
HanXRQChr14g0462471 Helianthus annuus HOM05D029832 ORTHO05D007753 2.2e-10 72.4 301 27.2
Dinv35244 Davidia involucrata HOM05D006627 ORTHO05D007753 1.4e-09 69.7 78 56.4
Cpa.g.sc107.94 Carica papaya HOM05D006627 ORTHO05D007753 2.4e-09 68.9 137 34.3
Lsat_1_v5_gn_2_131160 Lactuca sativa HOM05D029832 ORTHO05D007753 3.2e-09 68.6 398 25.1
AT5G52530 Arabidopsis thaliana HOM05D008661 ORTHO05D010872 6.0e-08 64.3 249 31.3
DCAR_010663 Daucus carota HOM05D006627 ORTHO05D007753 1.3e-07 63.2 830 20.4
unitig_747.g21861 Utricularia gibba HOM05D006627 ORTHO05D007753 1.7e-07 62.8 517 24.2
ECA238G4706 Erigeron canadensis HOM05D029832 ORTHO05D007753 2.5e-06 58.9 563 23.4
ECA233G3260 Erigeron canadensis HOM05D001089 ORTHO05D000920 4.3e-06 58.2 453 25.2
Zm00001eb179470 Zea mays HOM05D006627 ORTHO05D007753 4.3e-06 58.2 204 31.4


User provided reference genes

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