Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 5.7e-207 724.2 408 100.0
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 6.2e-169 597.8 408 84.6
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 3.9e-131 472.2 382 66.2
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 5.1e-131 471.9 348 69.0
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 8.7e-131 471.1 409 63.8
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 6.3e-129 464.9 330 68.2
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 1.8e-128 463.4 257 82.5
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.2e-127 460.7 270 78.5
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 1.5e-127 460.3 270 78.5
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 5.9e-127 458.4 336 67.3
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 7.7e-127 458.0 271 77.9
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 1.0e-126 457.6 268 78.4
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 1.0e-126 457.6 275 77.8
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 1.7e-126 456.8 275 77.5
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 2.2e-126 456.4 268 77.6
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 2.2e-126 456.4 270 78.1
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 2.9e-126 456.1 269 77.7
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.1e-125 454.1 271 77.5
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 1.1e-125 454.1 271 77.5
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 2.5e-125 453.0 270 76.3
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 3.2e-125 452.6 261 78.9
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 7.2e-125 451.4 305 76.1
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 7.2e-125 451.4 262 79.0
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 9.4e-125 451.1 328 71.0
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 1.6e-124 450.3 269 78.4
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 1.6e-124 450.3 271 77.5
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 2.1e-124 449.9 264 78.8
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 7.9e-124 448.0 269 77.0
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 7.9e-124 448.0 270 77.4
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.4e-123 447.2 271 77.1
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 1.8e-123 446.8 262 78.2
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.8e-123 446.8 263 77.9
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 2.3e-123 446.4 269 76.6
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 2.3e-123 446.4 365 60.8
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 3.9e-123 445.7 262 77.9
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 3.9e-123 445.7 265 78.1
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 3.9e-123 445.7 260 78.5
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 6.7e-123 444.9 265 78.5
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 6.7e-123 444.9 262 76.0
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 8.8e-123 444.5 299 69.6
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 1.1e-122 444.1 261 78.2
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 1.1e-122 444.1 265 77.4
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 1.5e-122 443.7 263 76.8
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.5e-122 443.7 333 64.9
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 2.0e-122 443.4 369 61.0
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 2.5e-122 443.0 265 77.4
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 2.5e-122 443.0 270 75.9
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 3.3e-122 442.6 261 78.2
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 3.3e-122 442.6 261 78.2
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 3.3e-122 442.6 262 77.5
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 4.3e-122 442.2 264 78.0
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 7.4e-122 441.4 261 76.6
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 1.7e-121 440.3 263 77.2
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 2.2e-121 439.9 261 77.4
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 2.2e-121 439.9 261 78.9
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 3.7e-121 439.1 293 71.3
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 4.8e-121 438.7 259 77.6
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 6.3e-121 438.3 266 75.2
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 6.3e-121 438.3 346 71.4
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.4e-120 437.2 324 66.4
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 1.8e-120 436.8 350 63.7
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 2.4e-120 436.4 271 76.0
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 5.3e-120 435.3 268 75.0
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 5.3e-120 435.3 256 78.9
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 9.1e-120 434.5 257 76.7
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 1.5e-119 433.7 259 76.4
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 2.0e-119 433.3 269 73.2
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 2.0e-119 433.3 342 64.3
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 2.0e-119 433.3 263 74.9
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 2.0e-119 433.3 348 66.1
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 3.4e-119 432.6 257 76.3
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 5.9e-119 431.8 269 73.2
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 7.7e-119 431.4 267 75.3
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 1.0e-118 431.0 261 76.2
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 1.7e-118 430.3 253 77.1
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 2.9e-118 429.5 351 61.3
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 2.9e-118 429.5 269 73.2
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.9e-118 429.5 269 72.9
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 3.8e-118 429.1 268 73.1
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 6.5e-118 428.3 352 62.5
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 3.2e-117 426.0 269 73.2
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 4.2e-117 425.6 337 63.2
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 4.2e-117 425.6 273 72.9
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.2e-116 424.1 255 76.5
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 3.6e-116 422.5 330 63.9
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 4.7e-116 422.2 269 72.1
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 7.9e-116 421.4 267 73.8
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 6.7e-115 418.3 269 71.4
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 2.6e-114 416.4 267 72.3
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 2.6e-114 416.4 263 73.0
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 3.3e-114 416.0 269 74.0
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 4.4e-114 415.6 263 73.4
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 5.7e-114 415.2 240 79.6
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 7.4e-114 414.8 267 72.3
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.3e-113 414.1 331 62.5
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 1.3e-113 414.1 269 70.3
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 2.8e-113 412.9 240 79.2
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 2.8e-113 412.9 262 74.4
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 4.8e-113 412.1 275 69.5
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 6.3e-113 411.8 397 55.9
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 8.2e-113 411.4 269 71.7
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 2.4e-112 409.8 262 74.0
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 4.1e-112 409.1 268 73.1
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.5e-111 407.1 340 62.6
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 7.7e-111 404.8 259 73.4
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 1.0e-110 404.4 260 73.1
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 4.2e-109 399.1 314 62.4
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 1.4e-107 394.0 257 71.6
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 1.6e-103 380.6 401 51.4
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 8.5e-102 374.8 317 60.3
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 1.5e-101 374.0 258 67.8
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 6.1e-100 368.6 279 64.5
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.4e-99 367.5 212 77.8
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 8.8e-99 364.8 260 68.1
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 6.3e-97 358.6 222 74.3
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 8.3e-97 358.2 202 78.2
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 3.6e-92 342.8 263 60.8
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 8.0e-92 341.7 271 58.7
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 3.0e-91 339.7 264 60.2
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 1.5e-85 320.9 184 79.3
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 3.4e-82 309.7 262 61.1
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 8.3e-81 305.1 247 57.9
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.6e-79 300.8 328 51.8
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 7.8e-79 298.5 172 80.2
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 7.8e-79 298.5 172 80.2
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 3.9e-78 296.2 257 57.6
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 1.9e-77 293.9 173 76.9
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 4.0e-75 286.2 241 60.2
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.5e-74 284.3 221 62.4
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 4.4e-74 282.7 177 75.1
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 3.7e-73 279.6 179 72.1
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.9e-72 277.3 173 74.6
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.3e-70 271.2 170 74.1
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 3.1e-67 260.0 275 49.1
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 2.9e-65 253.4 276 50.0
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 3.9e-62 243.0 250 48.8
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 8.6e-62 241.9 192 59.4
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.1e-60 237.3 215 56.3
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 5.2e-59 232.6 337 42.1
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 7.3e-53 212.2 183 56.8
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.6e-52 211.1 254 51.2
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.2e-50 204.9 202 57.9
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 3.2e-48 196.8 223 46.2
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.2e-47 194.9 205 51.7
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 2.1e-47 194.1 249 43.0
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 4.6e-47 193.0 201 52.2
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 3.3e-45 186.8 230 46.5
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 9.6e-45 185.3 182 50.5
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 1.3e-38 164.9 128 61.7
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 1.7e-38 164.5 124 61.3
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 1.1e-32 145.2 84 72.6
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.8e-30 137.9 81 74.1
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 6.5e-17 92.8 54 77.8
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 2.1e-15 87.8 49 73.5
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 2.1e-15 87.8 49 73.5
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 2.5e-08 64.3 248 29.0
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 3.2e-08 63.9 248 29.0
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 9.4e-08 62.4 248 29.4
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 1.2e-07 62.0 145 30.3
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 1.6e-07 61.6 248 29.0
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 1.4e-06 58.5 211 27.0
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 1.8e-06 58.2 226 27.9
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 2.3e-06 57.8 206 30.1
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 3.0e-06 57.4 227 28.6
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 3.9e-06 57.0 73 41.1


User provided reference genes

Program Settings