Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044198 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 6.3e-122 441.4 346 100.0
CSS0035640 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 6.7e-108 394.8 346 93.6
Manes.09G039600 Manihot esculenta HOM05D007176 ORTHO05D009050 1.7e-98 363.6 347 77.5
Rhsim04G0094400 Rhododendron simsii HOM05D007176 ORTHO05D009050 1.1e-97 360.9 347 87.0
Dinv16365 Davidia involucrata HOM05D007176 ORTHO05D009050 1.6e-96 357.1 346 68.2
Nn2g15783 Nelumbo nucifera HOM05D007176 ORTHO05D009050 8.0e-93 344.7 347 72.3
Thecc.05G178200 Theobroma cacao HOM05D007176 ORTHO05D009050 3.4e-91 339.3 347 62.0
RcHm_v2.0_Chr3g0478871 Rosa chinensis HOM05D007176 ORTHO05D009050 4.4e-91 339.0 345 66.7
Duzib106G0399 Durio zibethinus HOM05D007176 ORTHO05D009050 5.7e-91 338.6 347 63.7
Cfa020128 Carpinus fangiana HOM05D007176 ORTHO05D009050 1.3e-90 337.4 346 54.6
FAN02G0922 Fragaria x ananassa HOM05D007176 ORTHO05D009050 2.2e-90 336.7 345 74.2
TAR633G0683 Trochodendron aralioides HOM05D007176 ORTHO05D009050 2.2e-90 336.7 348 74.1
FvH4_6g21620 Fragaria vesca HOM05D007176 ORTHO05D009050 2.8e-90 336.3 345 74.2
QL07p025011 Quercus lobata HOM05D007176 ORTHO05D009050 2.8e-90 336.3 345 74.5
FAN14G2546 Fragaria x ananassa HOM05D007176 ORTHO05D009050 6.3e-90 335.1 345 74.5
TAR633G1141 Trochodendron aralioides HOM05D007176 ORTHO05D009050 6.3e-90 335.1 348 74.1
Lju124C23T17 Lonicera japonica HOM05D007176 ORTHO05D009050 1.1e-89 334.3 331 79.2
CiPaw.09G027300 Carya illinoinensis HOM05D007176 ORTHO05D009050 1.4e-89 334.0 346 75.4
Hma1.2p1_0645F.1_g194890 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 4.1e-89 332.4 347 75.5
Gohir.A04G053500 Gossypium hirsutum HOM05D007176 ORTHO05D009050 1.0e-87 327.8 347 64.8
FAN09G2372 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.7e-87 327.0 345 72.8
Aa31LG10G13110 Aethionema arabicum HOM05D007176 ORTHO05D009050 2.3e-87 326.6 348 65.5
FAN05G5781 Fragaria x ananassa HOM05D007176 ORTHO05D009050 3.8e-87 325.9 351 72.9
Eucgr.K01865 Eucalyptus grandis HOM05D007176 ORTHO05D009050 1.2e-85 320.9 347 71.8
Migut.K00028 Erythranthe guttata HOM05D007176 ORTHO05D009050 4.7e-85 318.9 342 75.1
Haze_20048 Corylus avellana HOM05D007176 ORTHO05D009050 2.3e-84 316.6 378 57.9
Haze_20055 Corylus avellana HOM05D007176 ORTHO05D009050 2.3e-84 316.6 378 57.9
BcaC07g40246 Brassica carinata HOM05D007176 ORTHO05D009050 3.0e-84 316.2 348 64.9
vmacro22113 Vaccinium macrocarpon HOM05D007176 ORTHO05D009050 8.9e-84 314.7 373 55.0
EL10Ac3g06857 Beta vulgaris HOM05D007176 ORTHO05D009050 2.6e-83 313.2 349 72.8
Actinidia17284 Actinidia chinensis HOM05D007176 ORTHO05D009050 4.4e-83 312.4 347 75.2
Cc06_g15630 Coffea canephora HOM05D007176 ORTHO05D009050 6.4e-82 308.5 350 79.4
THA.LOC104802720 Tarenaya hassleriana HOM05D007176 ORTHO05D009050 1.4e-81 307.4 349 59.9
A09p51090 Brassica napus HOM05D007176 ORTHO05D009050 1.9e-81 307.0 372 60.8
ECA247G1245 Erigeron canadensis HOM05D007176 ORTHO05D009050 1.9e-81 307.0 346 70.5
Prupe.7G084400 Prunus persica HOM05D007176 ORTHO05D009050 2.0e-80 303.5 345 70.7
COL.COLO4_29390 Corchorus olitorius HOM05D007176 ORTHO05D009050 1.0e-79 301.2 325 72.9
HanXRQChr10g0300591 Helianthus annuus HOM05D007176 ORTHO05D009050 1.7e-79 300.4 348 70.4
PGSC0003DMG400029168 Solanum tuberosum HOM05D007176 ORTHO05D009050 1.7e-79 300.4 344 80.2
Potri.006G195800 Populus trichocarpa HOM05D007176 ORTHO05D009050 8.6e-79 298.1 341 71.0
Lj5g0009846 Lotus japonicus HOM05D007176 ORTHO05D009050 1.1e-78 297.7 349 69.6
Sopen06g001340 Solanum pennellii HOM05D007176 ORTHO05D009050 3.3e-78 296.2 344 71.2
Peaxi162Scf00258g00925 Petunia axillaris HOM05D007176 ORTHO05D009050 5.6e-78 295.4 349 77.4
GSVIVG01033441001 Vitis vinifera HOM05D007176 ORTHO05D009050 8.0e-77 291.6 322 67.1
arahy.Tifrunner.gnm1.ann1.5B5G66 Arachis hypogaea HOM05D007176 ORTHO05D009050 1.8e-76 290.4 354 68.1
CAN.G111.5 Capsicum annuum HOM05D007176 ORTHO05D009050 3.1e-76 289.7 344 78.2
Solyc06g005380.3 Solanum lycopersicum HOM05D007176 ORTHO05D009050 3.1e-76 289.7 344 78.2
C08p33910 Brassica napus HOM05D007176 ORTHO05D009050 4.0e-76 289.3 348 61.8
CANSAT64G0938 Cannabis sativa HOM05D007176 ORTHO05D009050 1.5e-75 287.3 346 67.9
Lalb_Chr02g0153821 Lupinus albus HOM05D007176 ORTHO05D009050 2.9e-74 283.1 349 76.8
Cpa.g.sc85.35 Carica papaya HOM05D007176 ORTHO05D009050 3.7e-74 282.7 346 67.1
MD12G1053200 Malus domestica HOM05D007176 ORTHO05D009050 4.9e-74 282.3 345 67.5
Sabra06G0150500 Salix brachista HOM05D007176 ORTHO05D009050 1.4e-73 280.8 341 68.9
Os02g0281150 Oryza sativa ssp. japonica HOM05D007176 ORTHO05D009050 5.4e-73 278.9 341 69.5
arahy.Tifrunner.gnm1.ann1.I5CDLA Arachis hypogaea HOM05D007176 ORTHO05D009050 1.2e-72 277.7 367 65.1
PGR142G3952 Punica granatum HOM05D007176 ORTHO05D009050 1.0e-71 274.6 347 67.4
Lsat_1_v5_gn_9_26900 Lactuca sativa HOM05D007176 ORTHO05D009050 3.9e-71 272.7 347 62.0
Sc13g0002490 Simmondsia chinensis HOM05D007176 ORTHO05D009050 6.6e-71 271.9 346 59.0
MD14G1051600 Malus domestica HOM05D007176 ORTHO05D009050 4.3e-70 269.2 346 56.9
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 1.6e-69 267.3 329 48.0
CDE04G3485 Ceratophyllum demersum HOM05D007176 ORTHO05D009050 6.2e-69 265.4 353 64.9
TPR.G19346 Trifolium pratense HOM05D007176 ORTHO05D009050 6.2e-69 265.4 377 63.1
AL5G40300 Arabidopsis lyrata HOM05D007176 ORTHO05D009050 1.8e-68 263.8 347 64.8
CARHR168930 Cardamine hirsuta HOM05D007176 ORTHO05D009050 1.8e-68 263.8 347 57.9
Nitab4.5_0008255g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 3.1e-68 263.1 347 54.8
Thhalv10006065m.g Eutrema salsugineum HOM05D007176 ORTHO05D009050 6.8e-68 261.9 347 64.8
Sp5g04340 Schrenkiella parvula HOM05D007176 ORTHO05D009050 8.9e-68 261.5 347 55.3
Atru.BG.213.p Acer truncatum HOM05D007176 ORTHO05D009050 8.3e-66 255.0 340 66.2
Carub.0005s2528 Capsella rubella HOM05D007176 ORTHO05D009050 2.4e-65 253.4 347 63.7
Aqoxy279s002 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 2.1e-64 250.4 348 71.0
Aqoxy2G00051 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 2.1e-64 250.4 348 71.0
Zm00001eb237210 Zea mays HOM05D007176 ORTHO05D009050 2.7e-64 250.0 341 73.3
SalBow1G6257 Salvia bowleyana HOM05D007176 ORTHO05D009050 3.5e-64 249.6 350 63.4
AT3G58530 Arabidopsis thaliana HOM05D007176 ORTHO05D009050 4.6e-64 249.2 347 63.1
AUR62032747 Chenopodium quinoa HOM05D007176 ORTHO05D009050 6.2e-61 238.8 322 66.8
Medtr1g054625 Medicago truncatula HOM05D007176 ORTHO05D009050 4.4e-59 232.6 344 62.5
Hma1.2p1_0645F.1_g194900 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 3.2e-57 226.5 289 73.0
Glyma.09G105500 Glycine max HOM05D007176 ORTHO05D009050 1.6e-56 224.2 351 61.8
Ca_03573_v3 Cicer arietinum L. HOM05D007176 ORTHO05D009050 5.1e-55 219.2 352 59.9
Gohir.D04G094700 Gossypium hirsutum HOM05D007176 ORTHO05D009050 5.1e-55 219.2 276 61.2
BolC8t50987H Brassica oleracea HOM05D000032 ORTHO05D001620 6.6e-55 218.8 276 64.1
DCAR_019856 Daucus carota HOM05D007176 ORTHO05D009050 1.6e-53 214.2 327 41.9
Gorai.009G392400 Gossypium raimondii HOM05D007176 ORTHO05D009050 3.6e-53 213.0 332 55.1
PSO541G4948 Papaver somniferum HOM05D007176 ORTHO05D009050 1.1e-52 211.5 292 66.4
Ah.13g075580 Amaranthus hybridus HOM05D007176 ORTHO05D009050 2.6e-51 206.8 289 67.8
unitig_736.g22301 Utricularia gibba HOM05D007176 ORTHO05D009050 4.4e-51 206.1 401 62.8
SGA_v2.0_scaffold274G46490 Striga asiatica HOM05D007176 ORTHO05D009050 2.4e-49 200.3 136 74.3
Nitab4.5_0000009g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 1.3e-47 194.5 417 42.7
HPP92_010126 Vanilla planifolia HOM05D007176 ORTHO05D009050 6.6e-47 192.2 243 75.7
Ciclev10012430m.g Citrus clementina HOM05D007176 ORTHO05D009050 8.7e-47 191.8 141 66.7
Psat6g088000 Pisum sativum HOM05D007176 ORTHO05D009050 1.3e-45 188.0 297 73.7
PSO675G7508 Papaver somniferum HOM05D007176 ORTHO05D009050 1.1e-44 184.9 292 56.2
BcaC02g10014 Brassica carinata HOM05D007176 ORTHO05D009050 5.8e-43 179.1 296 62.8
AagrBONN_evm.TU.Sc2ySwM_228.1251 Anthoceros agrestis HOM05D007176 ORTHO05D009050 7.6e-43 178.7 346 61.6
BraA09t40553Z Brassica rapa HOM05D000032 ORTHO05D001620 3.8e-42 176.4 277 57.0
VMungo0720G0788 Vigna mungo HOM05D007176 ORTHO05D009050 7.1e-41 172.2 144 62.5
Phvul.007G261900 Phaseolus vulgaris HOM05D007176 ORTHO05D009050 3.0e-39 166.8 291 73.5
SEGI_09769 Sequoiadendron giganteum HOM05D007176 ORTHO05D009050 9.6e-38 161.8 287 62.7
BolC4t24963H Brassica oleracea HOM05D000032 ORTHO05D001620 2.4e-36 157.1 276 63.4
SMO118G0524 Selaginella moellendorffii HOM05D007176 ORTHO05D009050 5.3e-36 156.0 340 48.5
C04p33960 Brassica napus HOM05D007176 ORTHO05D009050 1.5e-35 154.5 276 63.4
Atru.chr8.1185 Acer truncatum HOM05D007176 ORTHO05D009050 5.8e-35 152.5 247 67.6
arahy.Tifrunner.gnm1.ann1.0S64XP Arachis hypogaea HOM05D007176 ORTHO05D009050 3.5e-32 143.3 273 53.5
Pp3c23_2930 Physcomitrium patens HOM05D007176 ORTHO05D009050 3.9e-31 139.8 345 45.8
Hund24819 Selenicereus undatus HOM05D007176 ORTHO05D001610 4.3e-30 136.3 127 79.5
ATR0001G043 Amborella trichopoda HOM05D007176 ORTHO05D009050 1.4e-25 121.3 84 70.2
Hund24823 Selenicereus undatus HOM05D007176 ORTHO05D009050 1.6e-24 117.9 251 31.5
HanXRQChr05g0140621 Helianthus annuus HOM05D007176 ORTHO05D009050 8.2e-21 105.5 75 72.0
HanXRQChr10g0316231 Helianthus annuus HOM05D007176 ORTHO05D009050 8.2e-21 105.5 75 72.0
A04p02540 Brassica napus HOM05D000032 ORTHO05D001620 8.2e-13 79.0 292 32.2
Mapoly0209s0007 Marchantia polymorpha HOM05D007176 ORTHO05D009050 3.2e-09 67.0 131 32.8
AUR62015309 Chenopodium quinoa HOM05D007176 ORTHO05D009050 7.9e-08 62.4 225 24.9
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 3.9e-07 60.1 269 22.3
Medtr1g054600 Medicago truncatula HOM05D002729 ORTHO05D003163 8.8e-07 58.9 38 65.8
unitig_736.g22302 Utricularia gibba HOM05D000180 ORTHO05D009050 4.4e-06 56.6 46 60.9


User provided reference genes

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