Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044166 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 2.8e-35 151.4 75 100.0
CSS0013450 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 2.0e-17 92.0 47 89.4
CSS0019744 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 6.1e-14 80.5 43 81.4
CSS0046020 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 6.1e-14 80.5 43 81.4
CSS0003982 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 1.8e-13 79.0 43 79.1
CSS0020308 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 1.8e-13 79.0 43 79.1
CSS0022252 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 2.8e-11 71.6 44 72.7
Duzib213G1074 Durio zibethinus HOM05D000053 ORTHO05D000035 2.8e-11 71.6 59 59.3
TPR.G29900 Trifolium pratense HOM05D000053 ORTHO05D000035 8.3e-11 70.1 61 52.5
Phvul.008G276600 Phaseolus vulgaris HOM05D000053 ORTHO05D000035 2.4e-10 68.6 64 54.7
Gohir.D05G375550 Gossypium hirsutum HOM05D000053 ORTHO05D000035 3.1e-10 68.2 53 54.7
Gorai.009G448300 Gossypium raimondii HOM05D000053 ORTHO05D000035 3.1e-10 68.2 53 56.6
TPR.G1256 Trifolium pratense HOM05D000053 ORTHO05D000035 1.6e-09 65.9 50 62.0
TPR.G39360 Trifolium pratense HOM05D000053 ORTHO05D000035 1.6e-09 65.9 61 50.8
Gohir.D05G376232 Gossypium hirsutum HOM05D000053 ORTHO05D000035 2.7e-09 65.1 60 50.0
Medtr5g086620 Medicago truncatula HOM05D000053 ORTHO05D000035 4.5e-09 64.3 61 50.8
CSS0039175 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 5.9e-09 63.9 45 68.9
Duzib213G0139 Durio zibethinus HOM05D000053 ORTHO05D000035 5.9e-09 63.9 49 61.2
Prupe.3G094900 Prunus persica HOM05D000053 ORTHO05D000035 5.9e-09 63.9 69 49.3
PGSC0003DMG400006652 Solanum tuberosum HOM05D000053 ORTHO05D000035 7.7e-09 63.5 45 66.7
Duzib213G0410 Durio zibethinus HOM05D000053 ORTHO05D000035 1.3e-08 62.8 45 64.4
Thecc.07G116800 Theobroma cacao HOM05D000053 ORTHO05D000035 1.3e-08 62.8 61 52.5
Gorai.002G060500 Gossypium raimondii HOM05D000053 ORTHO05D000035 3.8e-08 61.2 45 64.4
MBI14_g18955_MAGBIO Magnolia biondii HOM05D000053 ORTHO05D000448 3.8e-08 61.2 47 59.6
QL04p073740 Quercus lobata HOM05D000053 ORTHO05D000035 5.0e-08 60.8 55 54.5
Sopen12g004670 Solanum pennellii HOM05D000053 ORTHO05D000035 5.0e-08 60.8 44 63.6
Thecc.07G115400 Theobroma cacao HOM05D000053 ORTHO05D000035 5.0e-08 60.8 43 58.1
Cfa017124 Carpinus fangiana HOM05D000053 ORTHO05D000448 6.5e-08 60.5 68 42.6
QL07p034487 Quercus lobata HOM05D000053 ORTHO05D000448 6.5e-08 60.5 56 51.8
DCAR_012890 Daucus carota HOM05D000053 ORTHO05D000035 8.5e-08 60.1 52 53.8
Duzib213G0575 Durio zibethinus HOM05D000053 ORTHO05D000035 8.5e-08 60.1 44 63.6
Gohir.D05G376366 Gossypium hirsutum HOM05D000053 ORTHO05D000035 8.5e-08 60.1 50 52.0
QL93p0192_0035 Quercus lobata HOM05D000053 ORTHO05D000035 8.5e-08 60.1 50 54.0
Thecc.07G115700 Theobroma cacao HOM05D000053 ORTHO05D000035 8.5e-08 60.1 45 60.0
Gohir.A04G006840 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.1e-07 59.7 38 63.2
Duzib213G1093 Durio zibethinus HOM05D000053 ORTHO05D000035 1.5e-07 59.3 45 60.0
Thecc.07G126000 Theobroma cacao HOM05D000053 ORTHO05D000035 1.5e-07 59.3 52 55.8
PGSC0003DMG400006725 Solanum tuberosum HOM05D000053 ORTHO05D000035 1.9e-07 58.9 45 62.2
Atru.chr2.3641 Acer truncatum HOM05D000053 ORTHO05D000035 2.5e-07 58.5 61 44.3
QL07p034964 Quercus lobata HOM05D000053 ORTHO05D000448 2.5e-07 58.5 59 50.8
QL08p015932 Quercus lobata HOM05D000053 ORTHO05D000448 2.5e-07 58.5 59 49.2
Gorai.009G448600 Gossypium raimondii HOM05D000053 ORTHO05D000035 3.2e-07 58.2 53 50.9
Psat0s4150g0080 Pisum sativum HOM05D000053 ORTHO05D000035 3.2e-07 58.2 44 59.1
AUR62032303 Chenopodium quinoa HOM05D000053 ORTHO05D000035 4.2e-07 57.8 66 50.0
DCAR_012888 Daucus carota HOM05D000053 ORTHO05D000035 4.2e-07 57.8 44 59.1
Duzib213G0499 Durio zibethinus HOM05D000053 ORTHO05D000035 4.2e-07 57.8 44 56.8
Gohir.A04G007300 Gossypium hirsutum HOM05D000053 ORTHO05D000035 4.2e-07 57.8 53 50.9
Thecc.10G168200 Theobroma cacao HOM05D000053 ORTHO05D000035 4.2e-07 57.8 41 65.9
Eucgr.H00987 Eucalyptus grandis HOM05D000053 ORTHO05D000035 5.5e-07 57.4 50 58.0
Gohir.A04G006900 Gossypium hirsutum HOM05D000053 ORTHO05D000035 5.5e-07 57.4 53 50.9
Medtr5g087090 Medicago truncatula HOM05D000053 ORTHO05D000035 5.5e-07 57.4 44 54.5
QL04p073597 Quercus lobata HOM05D000053 ORTHO05D000035 5.5e-07 57.4 49 55.1
Ah.12g056470 Amaranthus hybridus HOM05D000053 ORTHO05D000035 7.2e-07 57.0 73 46.6
DCAR_028662 Daucus carota HOM05D000053 ORTHO05D000035 7.2e-07 57.0 44 56.8
Glyma.14G046000 Glycine max HOM05D000053 ORTHO05D000035 7.2e-07 57.0 43 58.1
Gohir.D05G375400 Gossypium hirsutum HOM05D000053 ORTHO05D000035 7.2e-07 57.0 36 61.1
Gohir.D05G375900 Gossypium hirsutum HOM05D000053 ORTHO05D000035 7.2e-07 57.0 38 60.5
Gohir.D05G380600 Gossypium hirsutum HOM05D000053 ORTHO05D000035 7.2e-07 57.0 53 50.9
Hma1.2p1_1532F.1_g289330 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 7.2e-07 57.0 60 46.7
Lsat_1_v5_gn_1_60541 Lactuca sativa HOM05D000053 ORTHO05D000035 7.2e-07 57.0 61 45.9
Medtr5g095120 Medicago truncatula HOM05D000053 ORTHO05D000035 7.2e-07 57.0 38 65.8
Medtr5g095200 Medicago truncatula HOM05D000053 ORTHO05D000035 7.2e-07 57.0 38 65.8
QL07p034607 Quercus lobata HOM05D000053 ORTHO05D000448 7.2e-07 57.0 58 48.3
Cfa000898 Carpinus fangiana HOM05D000053 ORTHO05D000448 9.4e-07 56.6 56 48.2
Duzib213G0571 Durio zibethinus HOM05D000053 ORTHO05D000035 9.4e-07 56.6 44 59.1
Gohir.A09G052268 Gossypium hirsutum HOM05D000053 ORTHO05D000035 9.4e-07 56.6 45 57.8
Gohir.D05G376100 Gossypium hirsutum HOM05D000053 ORTHO05D000035 9.4e-07 56.6 43 55.8
Gohir.D09G052936 Gossypium hirsutum HOM05D000053 ORTHO05D000035 9.4e-07 56.6 45 57.8
Gorai.006G056300 Gossypium raimondii HOM05D000053 ORTHO05D000035 9.4e-07 56.6 45 57.8
Gorai.009G444400 Gossypium raimondii HOM05D000053 ORTHO05D000035 9.4e-07 56.6 43 55.8
Gorai.011G154100 Gossypium raimondii HOM05D000053 ORTHO05D000448 9.4e-07 56.6 49 61.2
Medtr5g087070 Medicago truncatula HOM05D000053 ORTHO05D000035 9.4e-07 56.6 44 54.5
QL04p064871 Quercus lobata HOM05D000053 ORTHO05D000035 9.4e-07 56.6 44 59.1
Thecc.07G124900 Theobroma cacao HOM05D000053 ORTHO05D000035 9.4e-07 56.6 49 53.1
CSS0045216 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 1.2e-06 56.2 44 56.8
FAN14G4565 Fragaria x ananassa HOM05D000053 ORTHO05D000035 1.2e-06 56.2 69 40.6
Medtr4g064760 Medicago truncatula HOM05D000053 ORTHO05D000035 1.2e-06 56.2 43 58.1
QL08p005411 Quercus lobata HOM05D000053 ORTHO05D000035 1.2e-06 56.2 43 58.1
Thecc.07G115300 Theobroma cacao HOM05D000053 ORTHO05D000035 1.2e-06 56.2 49 53.1
Cfa011535 Carpinus fangiana HOM05D000053 ORTHO05D000448 1.6e-06 55.8 60 45.0
Cc08_g11280 Coffea canephora HOM05D000053 ORTHO05D000035 1.6e-06 55.8 47 53.2
Cc08_g11300 Coffea canephora HOM05D000053 ORTHO05D000035 1.6e-06 55.8 47 53.2
COL.COLO4_09795 Corchorus olitorius HOM05D000053 ORTHO05D000035 1.6e-06 55.8 43 53.5
Gohir.D01G042100 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.6e-06 55.8 48 47.9
Gohir.D05G375700 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.6e-06 55.8 36 61.1
Gohir.D05G375800 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.6e-06 55.8 36 61.1
Gohir.D05G376500 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.6e-06 55.8 36 61.1
Gohir.D05G376800 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.6e-06 55.8 36 61.1
Gohir.D05G380200 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.6e-06 55.8 36 61.1
Gohir.D05G380700 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.6e-06 55.8 36 61.1
Gohir.D05G380800 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.6e-06 55.8 36 61.1
Gohir.D05G381400 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.6e-06 55.8 36 61.1
Gohir.D05G381666 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.6e-06 55.8 36 61.1
Gohir.D05G381700 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.6e-06 55.8 36 61.1
Gohir.D05G381920 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.6e-06 55.8 36 61.1
Gorai.002G052800 Gossypium raimondii HOM05D000053 ORTHO05D000035 1.6e-06 55.8 48 47.9
Gorai.002G052900 Gossypium raimondii HOM05D000053 ORTHO05D000035 1.6e-06 55.8 48 47.9
Gorai.009G444200 Gossypium raimondii HOM05D000053 ORTHO05D000035 1.6e-06 55.8 36 61.1
Gorai.009G447900 Gossypium raimondii HOM05D000053 ORTHO05D000035 1.6e-06 55.8 36 61.1
Gorai.009G448900 Gossypium raimondii HOM05D000053 ORTHO05D000035 1.6e-06 55.8 36 61.1
Thecc.07G116200 Theobroma cacao HOM05D000053 ORTHO05D000035 1.6e-06 55.8 44 56.8
TPR.G1206 Trifolium pratense HOM05D000053 ORTHO05D000035 1.6e-06 55.8 36 69.4
AUR62032334 Chenopodium quinoa HOM05D000053 ORTHO05D000035 2.1e-06 55.5 39 64.1
Gohir.D05G382000 Gossypium hirsutum HOM05D000053 ORTHO05D000035 2.1e-06 55.5 36 61.1
Gorai.009G448200 Gossypium raimondii HOM05D000053 ORTHO05D000035 2.1e-06 55.5 36 61.1
Thecc.07G114400 Theobroma cacao HOM05D000053 ORTHO05D000035 2.1e-06 55.5 43 53.5
Cc01_g08320 Coffea canephora HOM05D000053 ORTHO05D000035 2.7e-06 55.1 60 45.0
DCAR_019691 Daucus carota HOM05D000053 ORTHO05D000035 2.7e-06 55.1 52 50.0
Glyma.14G042100 Glycine max HOM05D000053 ORTHO05D000035 2.7e-06 55.1 43 55.8
Glyma.14G042300 Glycine max HOM05D000053 ORTHO05D000035 2.7e-06 55.1 43 55.8
Gohir.D05G380400 Gossypium hirsutum HOM05D000053 ORTHO05D000035 2.7e-06 55.1 36 61.1
Gohir.D05G381000 Gossypium hirsutum HOM05D000053 ORTHO05D000035 2.7e-06 55.1 50 52.0
Lsat_1_v5_gn_7_97801 Lactuca sativa HOM05D000053 ORTHO05D000035 2.7e-06 55.1 55 47.3
LjContig00564g0006228 Lotus japonicus HOM05D000053 ORTHO05D000035 2.7e-06 55.1 46 56.5
MD09G1131100 Malus domestica HOM05D000053 ORTHO05D000035 2.7e-06 55.1 45 57.8
Medtr5g079980 Medicago truncatula HOM05D000053 ORTHO05D000035 2.7e-06 55.1 36 66.7
Medtr5g080000 Medicago truncatula HOM05D000053 ORTHO05D000035 2.7e-06 55.1 36 66.7
Medtr5g087320 Medicago truncatula HOM05D000053 ORTHO05D000035 2.7e-06 55.1 44 52.3
QL03p028493 Quercus lobata HOM05D000053 ORTHO05D000035 2.7e-06 55.1 45 55.6
QL04p065626 Quercus lobata HOM05D000053 ORTHO05D000035 2.7e-06 55.1 43 55.8
TPR.G8599 Trifolium pratense HOM05D000053 ORTHO05D000035 2.7e-06 55.1 36 66.7
CSS0001284 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 3.6e-06 54.7 44 54.5
DCAR_012889 Daucus carota HOM05D000053 ORTHO05D000035 3.6e-06 54.7 52 48.1
Eucgr.B00686 Eucalyptus grandis HOM05D000053 ORTHO05D000035 3.6e-06 54.7 40 57.5
Gohir.A02G019802 Gossypium hirsutum HOM05D000053 ORTHO05D000448 3.6e-06 54.7 44 54.5
Gorai.009G448000 Gossypium raimondii HOM05D000053 ORTHO05D000035 3.6e-06 54.7 36 58.3
LjContig00310g0014828 Lotus japonicus HOM05D000053 ORTHO05D000035 3.6e-06 54.7 46 54.3
Medtr4g046920 Medicago truncatula HOM05D000053 ORTHO05D000035 3.6e-06 54.7 48 50.0
Nitab4.5_0002329g0010 Nicotiana tabacum HOM05D000053 ORTHO05D000035 3.6e-06 54.7 54 48.1
Psat2g098920 Pisum sativum HOM05D001169 ORTHO05D000029 3.6e-06 54.7 46 56.5
QL03p024134 Quercus lobata HOM05D000053 ORTHO05D000035 3.6e-06 54.7 43 58.1
QL04p073767 Quercus lobata HOM05D000053 ORTHO05D000035 3.6e-06 54.7 44 59.1
QL08p005311 Quercus lobata HOM05D000053 ORTHO05D000035 3.6e-06 54.7 43 58.1
QL08p005375 Quercus lobata HOM05D000053 ORTHO05D000035 3.6e-06 54.7 43 58.1
QL10p008594 Quercus lobata HOM05D000053 ORTHO05D000035 3.6e-06 54.7 47 55.3
QL10p008699 Quercus lobata HOM05D000053 ORTHO05D000035 3.6e-06 54.7 46 56.5
SEGI_26389 Sequoiadendron giganteum HOM05D010421 ORTHO05D000029 3.6e-06 54.7 56 51.8
PGSC0003DMG400011708 Solanum tuberosum HOM05D000053 ORTHO05D000035 3.6e-06 54.7 45 55.6
Thecc.07G147100 Theobroma cacao HOM05D000053 ORTHO05D000035 3.6e-06 54.7 50 50.0
Ciclev10003539m.g Citrus clementina HOM05D000053 ORTHO05D000035 4.7e-06 54.3 46 54.3
Dinv26617 Davidia involucrata HOM05D000053 ORTHO05D000035 4.7e-06 54.3 38 63.2
Duzib213G0467 Durio zibethinus HOM05D000053 ORTHO05D000035 4.7e-06 54.3 44 59.1
Duzib268G1793 Durio zibethinus HOM05D000053 ORTHO05D000035 4.7e-06 54.3 50 50.0
FvH4_6g40847 Fragaria vesca HOM05D000053 ORTHO05D000035 4.7e-06 54.3 44 54.5
FAN14G3992 Fragaria x ananassa HOM05D000053 ORTHO05D000035 4.7e-06 54.3 44 54.5
Medtr5g086810 Medicago truncatula HOM05D000053 ORTHO05D000035 4.7e-06 54.3 44 52.3
Medtr5g086945 Medicago truncatula HOM05D000053 ORTHO05D000035 4.7e-06 54.3 44 52.3
QL08p006319 Quercus lobata HOM05D000053 ORTHO05D000035 4.7e-06 54.3 44 56.8
QL09p047929 Quercus lobata HOM05D000053 ORTHO05D000035 4.7e-06 54.3 48 50.0
Thecc.07G113900 Theobroma cacao HOM05D000053 ORTHO05D000035 4.7e-06 54.3 45 55.6
Thecc.07G125000 Theobroma cacao HOM05D000053 ORTHO05D000035 4.7e-06 54.3 44 54.5
TPR.G14151 Trifolium pratense HOM05D000053 ORTHO05D000035 4.7e-06 54.3 36 63.9
TPR.G8587 Trifolium pratense HOM05D000053 ORTHO05D000035 4.7e-06 54.3 36 63.9
CSS0048590 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 6.1e-06 53.9 45 53.3
CsaV3_2G010140 Cucumis sativus L. HOM05D000053 ORTHO05D000035 6.1e-06 53.9 43 58.1
Glyma.14G044400 Glycine max HOM05D000053 ORTHO05D000035 6.1e-06 53.9 43 55.8
Medtr5g096340 Medicago truncatula HOM05D000053 ORTHO05D000035 6.1e-06 53.9 38 63.2
QL02p076375 Quercus lobata HOM05D000053 ORTHO05D000035 6.1e-06 53.9 47 53.2
QL07p034948 Quercus lobata HOM05D000053 ORTHO05D000448 6.1e-06 53.9 62 48.4
Thecc.07G004200 Theobroma cacao HOM05D000053 ORTHO05D000035 6.1e-06 53.9 44 56.8
GSVIVG01001407001 Vitis vinifera HOM05D000053 ORTHO05D000035 6.1e-06 53.9 56 44.6
CSS0020988 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 8.0e-06 53.5 45 53.3
CSS0026838 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 8.0e-06 53.5 44 54.5
AUR62032302 Chenopodium quinoa HOM05D000053 ORTHO05D000035 8.0e-06 53.5 72 40.3
Duzib128G1045 Durio zibethinus HOM05D000053 ORTHO05D000035 8.0e-06 53.5 62 43.5
Duzib133G0850 Durio zibethinus HOM05D000053 ORTHO05D000035 8.0e-06 53.5 43 53.5
Duzib268G1632 Durio zibethinus HOM05D000053 ORTHO05D000035 8.0e-06 53.5 45 53.3
ECA248G3144 Erigeron canadensis HOM05D000053 ORTHO05D000035 8.0e-06 53.5 47 51.1
Gohir.A07G193266 Gossypium hirsutum HOM05D000053 ORTHO05D000035 8.0e-06 53.5 46 50.0
Gohir.D05G376601 Gossypium hirsutum HOM05D000053 ORTHO05D000035 8.0e-06 53.5 36 58.3
Gohir.D05G382201 Gossypium hirsutum HOM05D000053 ORTHO05D000035 8.0e-06 53.5 36 58.3
HanXRQChr10g0280691 Helianthus annuus HOM05D000053 ORTHO05D000035 8.0e-06 53.5 45 55.6
Hma1.2p1_1223F.1_g268350 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 8.0e-06 53.5 61 42.6
Medtr5g086550 Medicago truncatula HOM05D000053 ORTHO05D000035 8.0e-06 53.5 43 53.5
Medtr5g086650 Medicago truncatula HOM05D000053 ORTHO05D000035 8.0e-06 53.5 43 55.8
QL04p065586 Quercus lobata HOM05D000053 ORTHO05D000035 8.0e-06 53.5 43 55.8
QL07p003288 Quercus lobata HOM05D000053 ORTHO05D000035 8.0e-06 53.5 44 54.5
RcHm_v2.0_Chr2g0156411 Rosa chinensis HOM05D000053 ORTHO05D000035 8.0e-06 53.5 52 48.1
Thecc.07G004600 Theobroma cacao HOM05D000053 ORTHO05D000035 8.0e-06 53.5 39 59.0
Thecc.07G114800 Theobroma cacao HOM05D000053 ORTHO05D000035 8.0e-06 53.5 44 56.8


User provided reference genes

Program Settings